CDS complement (join(1. .384;68799. .68879))
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-83
    /note=
    /note=Start : original

CDS 1154 - 1402
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein  e-51
    /note=
    /note=Start : original

CDS 1399 - 1611
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] membrane protein e-42
    /note=
    /note=Two membrane hits with DeepTMHMM; confirmed by SOSUI
    /note=
    /note=Start : original

CDS 1611 - 1706
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] membrane protein e-11
    /note=
    /note=One membrane hit with DeepTMHMM; confirmed by SOSUI
    /note=
    /note=Start : original

CDS 1706 - 1942
    /note=Phagesdb Function: DNA binding protein
    /note=Phagesdb BLAST: [ Mellow Yellow ] DNA binding protein 5 e-41
    /note=HHPRED: DNA polymerase ( low significance 0.027 )
    /note=NCBI BLAST:  [ Mellow Yellow ] DNA binding protein 2.124 e-50
    /note=
    /note=Start : original

CDS 1939 - 2514
    /note=Phagesdb Function : N/a 
    /note=Phagesdb BLAST : function unknown
    /note=HHPRED: DNA : None of significance 
    /note=NCBI BLAST : [ Mellow Yellow] membrane protein 2.11 e-131
    /note=
    /note=Two membrane hits; confirmed by SOSUI
    /note=
    /note=Start : original

CDS 2511 - 3038
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Begale ] hypothetical protein 8.53 e-108
    /note=
    /note=Start : original

CDS 3035 - 3442
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: PDGYG protein ( low coverage but significant ) 
    /note=NCBI BLAST: [ Beagle ] hypothetical protein 1.396 e-93
    /note=
    /note=Start : original

CDS 3572 - 3700
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: [ Beagle ] function unknown 
    /note=HHPRED: N/a
    /note=NCBI BLAST: [ Beagle ] hypothetical protein 4.432 e-19
    /note=
    /note=DeepTMHMM membrane hit; SOSUI membrane protein
    /note=
    /note=Start : original

CDS 3700 - 3855
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST:
    /note=HHPRED: N/a ( none of significance )
    /note=NCBI BLAST: [ Beagle ] hypothetical protein 1.11 e-25
    /note=
    /note=Start : original

CDS 3852 - 4100
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: [ Beagle ] unknown function 
    /note=HHPRED: N/a ( none of significance)
    /note=NCBI BLAST: [ Beagle ] hypothetical protein e-53
    /note=
    /note=Start : original

CDS 4123 - 4704
    /note=Phagesdb Function: Parb-like nuclease domain protein in AP1 
    /note=Phagesdb BLAST: [ Beagle ] ParB-like nuclease domain protein
    /note=HHPRED: ParB-like nuclease domain protein e-17 
    /note=NCBI BLAST: [Beagle] ParB-like nuclease domain protein e-138
    /note=
    /note=Start : original

CDS 4704 - 4943
    /note=Phagesdb Function: N/a ( no similar clusters present )
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: N/a (none of significance)
    /note=NCBI BLAST: [ Beagle] hypothetical protein e-48
    /note=
    /note=Start : original

CDS 4928 - 5026
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: N/a ( none of significance )
    /note=NCBI BLAST: [ Odyssey395 ] hypothetical protein e-13
    /note=
    /note=Start : double check

CDS 5013 - 5531
    /note=Phagesdb Function: helix-turn-helix dna binding domain AP2
    /note=Phagesdb BLAST: [  AP2 Pointis ]  helix-turn-helix dna binding domain. e-91 
    /note=HHPRED: N/a ( none of significance ) 
    /note=NCBI BLAST: [ Pointis ] helix-turn-helix dna binding domain e-119
    /note=
    /note=Start : original
    /note=
    /note=TERMINASE SMALL ?

CDS 5524 - 5943
    /note=Phagesdb Function: ribbon-helix-helix dna binding domain   AP2
    /note=Phagesdb BLAST: [ Mellow Yellow ] ribbon-helix-helix dna binding domain e-77 
    /note=HHPRED: Hit with minor significance 
    /note=NCBI BLAST: [ Mellow Yellow ] ribbon-helix-helix dna binding domain e-96
    /note=
    /note=Start : original

CDS 5956 - 7587
    /note=Phagesdb Function: terminase or terminase, large subunit AP2
    /note=Phagesdb BLAST:  [ Mellow Yellow and others ] terminase, large subunit  [ Beagle and others ] terminase 
    /note=HHPRED: [ D6E ] terminase, large subunit e-31
    /note=NCBI BLAST: [Mellow Yellow] Terminase, large subunit 0
    /note=
    /note=Start : original

CDS 7645 - 7956
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: protein of unknown function e-21
    /note=NCBI BLAST: [ Odyssey395 and etc. ] membrane protein (high significance hits)
    /note="double check"
    /note=
    /note=3 membrane hits on DeepTMHMM; SOSUI confirmed
    /note=
    /note=Start : original

CDS 7959 - 9848
    /note=Phagesdb Function: portal protein (in AP2) 
    /note=Phagesdb BLAST: [Mellow Yellow and etc.] portal protein 
    /note=HHPRED: [ phage HK97 ] portal protein e-27
    /note=NCBI BLAST: [ Mellow Yellow and etc ] portal protein e of 0

CDS complement (7953 - 8105)
    /note=Phagesdb Function: N/a  (not one close to my cluster)
    /note=Phagesdb BLAST: function unknown (for AP cluster)
    /note=HHPRED: protein of unknown function e-21
    /note=NCBI BLAST: [Mellow Yellow] membrane protein e-68  [Pureglob5] hypothetical protein e-68
    /note=
    /note=changed to hypothetical protein

CDS 9845 - 9988
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: [ Beagle ] function unknown e-25 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Beagle and etc ]hypothetical protein  e-25

CDS 9985 - 12645
    /note=Phagesdb Function: capsid maturation protease ( multiple AP phages ) 
    /note=Phagesdb BLAST: capsid maturation protease ( multiple AP phages ) 
    /note=HHPRED: None of high significance 
    /note=NCBI BLAST:[ Mellow Yellow and etc]  capsid maturation protease e of 0

CDS 12942 - 14669
    /note=Phagesdb Function: major capsid hexamer protein ( multiple AP groups )
    /note=Phagesdb BLAST: major capsid hexamer protein ( multiple AP groups )
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Beagle] major capsid hexamer protein e of 0
    /note=
    /note=Start : original

CDS 14737 - 15495
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST:[ Mellow Yellow ] hypothetical protein  e-172
    /note=
    /note=Start : original

CDS 15507 - 15956
    /note=Phagesdb Function: N/a
    /note=Phagesdb BLAST: function protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Beagle ] hypothetical protein e-99
    /note=
    /note=Start : original

CDS 15960 - 16880
    /note=Phagesdb Function: major tail protein (many AP phages)
    /note=Phagesdb BLAST: major tail protein (many AP phages)
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow and etc. ] major tail protein e of 0
    /note=
    /note=Start : original

CDS 16947 - 17885
    /note=Phagesdb Function: endolysin ( seen twice in AP2 phage ) 
    /note=Phagesdb BLAST: endolysin ( in AP3 phage )
    /note=HHPRED: membrane protein ? ( Low significance ) 
    /note=NCBI BLAST: [BruhMoment] endolysin e of 0
    /note=
    /note=Start : double check LORF

CDS 17896 - 18513
    /note=Phagesdb Function: head-to-tail adaptor ( found in phage in AP cluster ) 
    /note=Phagesdb BLAST:  [Pointis] head-to-tail adaptor
    /note=HHPRED: Head completion protein e-17 
    /note=NCBI BLAST: [Pointis] head-to-tail adaptor e-143
    /note=
    /note=Start : original

CDS 18513 - 19040
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow] hypothetical protein e- 122
    /note=
    /note=
    /note=Start : original

CDS 19040 - 19552
    /note=Phagesdb Function: minor tail protein (found in AP2)
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED:  minor - capsid protein e-10 
    /note=NCBI BLAST: [Pointis] hypothetical protein e-104
    /note=
    /note="double check"

CDS 19616 - 20050
    /note=Phagesdb Function: tail assembly chaperone (found in AP phages ) 
    /note=Phagesdb BLAST: [Beagle and etc ] function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow ] tail assembly chaperone e-99
    /note=
    /note="double check"
    /note=
    /note=Start : original

CDS 20062 - 20190
    /note=Phagesdb Function: tail assembly chaperone (found in AP phages) 
    /note=Phagesdb BLAST: [Beagle] function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Beagle] hypothetical protein e-21
    /note=
    /note=slippery sequence; GGGAAAA 
    /note=
    /note="double check"
    /note=
    /note=Start : original

CDS 20211 - 25094
    /note=Phagesdb Function: tape measure protein ( found in some AP phages ) 
    /note=Phagesdb BLAST: function unknown ( in AP phages ) 
    /note=HHPRED: tape measure protein e-23
    /note=NCBI BLAST: [Multiple AP phages] tape measure protein ( e of 0 )
    /note=
    /note=Start : original

CDS 25104 - 26312
    /note=Phagesdb Function: minor tail protein ( found in AP phages ) 
    /note=Phagesdb BLAST: [Beagle and etc] minor tail protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow and etc.] minor tail protein (e of 0 )
    /note=
    /note=Start : original

CDS 26317 - 27450
    /note=Phagesdb Function: minor tail protein 
    /note=Phagesdb BLAST: [Beagle and etc] minor tail protein 
    /note=HHPRED: ?
    /note=NCBI BLAST: [ Beagle and etc ] minor tail protein ( e of 0 )
    /note=
    /note=Start : original

CDS 27683 - 28753
    /note=Phagesdb Function: minor tail protein ( found in AP phages ) 
    /note=Phagesdb BLAST: [Pureglobe5 and etc] minor tail protein 
    /note=HHPRED: Major tropism determinant N-terminal domain (e-11)
    /note=NCBI BLAST: [ Pureglobe5 ] minor tail protein (e of 0 )
    /note=
    /note=Start : original

CDS 28753 - 30567
    /note=Phagesdb Function: minor tail protein ( some found in AP2 phages ) 
    /note=Phagesdb BLAST: [ Mellow Yellow and etc ] minor tail protein 
    /note=HHPRED: None of major significance 
    /note=NCBI BLAST: [ Mellow Yellow ] minor tail protein ( e of 0 )
    /note=
    /note=help

CDS 30595 - 32598
    /note=Phagesdb Function: minor tail protein ( found in some AP phages ) 
    /note=Phagesdb BLAST: [ Mellow Yellow ] minor tail protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Odyssey395 ] minor tail protein ( e of 0 )
    /note=
    /note=Start : original

CDS 32932 - 33111
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow ] hypothetical protein e-33
    /note=
    /note=Start : original

CDS 33116 - 33460
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow] membrane protein e-77
    /note=`double check`
    /note=
    /note=Start : original

CDS 33457 - 33672
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow] hypothetical protein e-42
    /note=
    /note=Start : original

CDS 33669 - 34052
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow] membrane protein e-85
    /note=
    /note=Start : original

CDS 34045 - 34338
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Beagle ] membrane protein e-66
    /note=
    /note=Start : original

CDS 34348 - 36045
    /note=Phagesdb Function: minor tail protein ( found in AP2 phages ) 
    /note=Phagesdb BLAST: [Beagle and etc ] minor tail protein 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical  and [ Beagle ] minor tail protein
    /note=
    /note=Start : original

CDS complement (36178 - 36597)
    /note=Phagesdb Function: rusa-like resolvase ( found in some AP phages ) 
    /note=Phagesdb BLAST: RusA-like resolvase
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Beagle ] RusA-like resolvase e-99
    /note=
    /note=Start : original

CDS complement (36594 - 36785)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein
    /note=
    /note=help

CDS complement (36782 - 37021)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED:  None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-48
    /note=
    /note=Start : original

CDS complement (37018 - 37221)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Pureglobe5 ] Hypothetical protein e-41
    /note=
    /note=Start : original

CDS complement (37214 - 37507)
    /note=Phagesdb Function: helix-turn-helix dna binding domain ( found in limited AP phages ) 
    /note=Phagesdb BLAST: [ Beagle and etc ]  helix-turn-helix dna binding domain
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Beagle and etc. helix-turn-helix dna binding domain e- 64
    /note=
    /note=help

CDS complement (37504 - 37800)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Beagle and etc ] hypothetical protein e-66
    /note=
    /note=Start : original

CDS complement (37797 - 38219)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of major significance 
    /note=NCBI BLAST: [Beagle and etc. ] hypothetical protein e-96
    /note=
    /note=Start : modified start position

CDS complement (38216 - 38434)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Pureglobe5 ] hypothetical protein  e-41
    /note=
    /note=Start : original

CDS complement (38431 - 38685)
    /note=Phagesdb Function: helix-turn-helix dna binding domain or dna binding protein 
    /note=Phagesdb BLAST: [ Mellow Yellow ] dna binding protein [Pointis] ]helix-turn-helix dna binding domain
    /note=HHPRED: dna binding protein e-10 
    /note=NCBI BLAST: [ Mellow Yellow ] dna binding protein or [Odyssey395] helix-turn-helix dna binding domain
    /note=
    /note=help

CDS complement (38682 - 38933)
    /note=Phagesdb Function: helix-turn-helix dna binding protein ( found in AP2) 
    /note=Phagesdb BLAST: [Mellow Yellow and etc ]  helix-turn-helix dna binding protein 
    /note=HHPRED: Some kind of Dna binding 
    /note=NCBI BLAST: [ Mellow Yellow ]  helix-turn-helix dna binding protein e-51
    /note=
    /note=Start : original

CDS complement (38933 - 39334)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: none of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-88

CDS complement (39327 - 39434)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST:  [ Mellow Yellow ] hypothetical protein e-7
    /note=
    /note=help

CDS complement (39434 - 39847)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-97
    /note=
    /note=Start : original

CDS complement (39844 - 40182)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-75
    /note=
    /note=help

CDS complement (40179 - 40367)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow] hypothetical protein e-37
    /note=
    /note=Start : original

CDS complement (40364 - 40495)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow] hypothetical protein e-21
    /note=
    /note=Start : original

CDS complement (40495 - 40818)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow] Hypothetical protein e-73
    /note=
    /note=Start : original

CDS complement (40815 - 41195)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST:[ Mellow Yellow] hypothetical protein e-87
    /note=
    /note=Start : original

CDS complement (41192 - 41629)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST:[ Mellow Yellow ] hypothetical protein  e-100
    /note=
    /note=help

CDS complement (41626 - 41892)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Beagle ] hypothetical protein e-35
    /note=
    /note=Start : original

CDS complement (41889 - 42197)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-52
    /note=
    /note=help

CDS complement (42197 - 42460)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [ Mellow Yellow ] hypothetical protein e-56
    /note=
    /note=Start : original

CDS complement (42460 - 42687)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: Hypothetical
    /note=
    /note=Start : original

CDS complement (42687 - 43214)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical
    /note=
    /note=Start : original (questionable)

CDS complement (43247 - 43465)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: Hypothetical
    /note=
    /note=Start : original

CDS complement (43462 - 43998)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original (questionable)

CDS complement (43995 - 44528)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (44603 - 44875)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (44868 - 45101)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (45103 - 45414)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original (questionable )

CDS complement (45411 - 45587)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: [Mellow Yellow] membrane protein e-31
    /note=
    /note=one membrane protein hit on DeepTMHMM; confirmed by SOSUI
    /note=
    /note=Start : original

CDS complement (45584 - 45913)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (45906 - 47078)
    /note=Phagesdb Function: cas4 exonuclease
    /note=Phagesdb BLAST: [Mellow Yellow] cas4 exonuclease 
    /note=HHPRED: cas4 exonuclease
    /note=NCBI BLAST: [Mellow Yellow] cas4 exonuclease
    /note=
    /note=help

CDS complement (47286 - 48173)
    /note=Phagesdb Function: dna binding protein , reca-like dna recombinase, or dna recombinase
    /note=Phagesdb BLAST: ( Multiple AP2 phages ) dna binding protein , reca-like dna recombinase
    /note=HHPRED: DNA repair and recombination protein e-29 
    /note=NCBI BLAST: dna binding protein (e of 0) RecA-like DNA recombinase e-89 
    /note=
    /note="double check"
    /note=help

CDS complement (48326 - 48538)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (48538 - 49014)
    /note=Phagesdb Function: deoxyuridine triphosphatase
    /note=Phagesdb BLAST:  deoxyuridine triphosphatase and dUTPase
    /note=HHPRED: dUTPase e-29 
    /note=NCBI BLAST: deoxyuridine triphosphatase e-79
    /note=
    /note=help

CDS complement (49011 - 49217)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (49217 - 49543)
    /note=Phagesdb Function: HNH endonuclease
    /note=Phagesdb BLAST: HNH endonuclease
    /note=HHPRED: N/a 
    /note=NCBI BLAST: [Mellow Yellow] HNH endonuclease e-73
    /note=
    /note=Start : original

CDS complement (49540 - 49740)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (49737 - 50087)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (50084 - 50419)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (50416 - 50880)
    /note=Phagesdb Function: dna binding protein and helix-turn-helix dna binding domain in AP2 phages 
    /note=Phagesdb BLAST:  dna binding protein and helix-turn-helix dna binding domain in AP2 phages
    /note=HHPRED: Helix motif 
    /note=NCBI BLAST: dna binding protein e- 85 and helix-turn-helix dna binding domain e- 86  in AP2 phages
    /note=
    /note=help

CDS complement (50877 - 51443)
    /note=Phagesdb Function: major capsid hexamer protein (found in Ap phages)
    /note=Phagesdb BLAST: function unknown
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: Hypothetical protein e-135
    /note=
    /note=`double check`
    /note=
    /note=help

CDS complement (51440 - 51805)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (51848 - 52288)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (52304 - 53905)
    /note=Phagesdb Function: dna primase/helicase (found in AP phages)
    /note=Phagesdb BLAST: dna primase/helicase
    /note=HHPRED: dna primase/helicase
    /note=NCBI BLAST: dna primase/helicase e of 0
    /note=
    /note=Start : original

CDS complement (53945 - 54688)
    /note=Phagesdb Function: helix-turn-helix dna binding domain
    /note=Phagesdb BLAST: helix-turn-helix dna binding domain
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: helix-turn-helix dna binding domain e-179
    /note=
    /note=Start : original

CDS 54972 - 56561
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: No data 
    /note=
    /note=" double check"
    /note=DELETE

CDS complement (54957 - 55457)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (55527 - 56132)
    /note=Phagesdb Function: ssdna binding protein
    /note=Phagesdb BLAST: SSB protein or ssdna binding protein
    /note=HHPRED: None of significance 
    /note=NCBI BLAST:  ssdna binding protein
    /note=
    /note=Start : original

CDS complement (56136 - 56438)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (56583 - 57077)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (57081 - 58406)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (58418 - 59329)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (59366 - 59614)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (59611 - 59805)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (59789 - 60439)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (60560 - 60817)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (60817 - 61488)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (61558 - 61767)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (61770 - 62180)
    /note=Phagesdb Function: endolysin ( in AT cluster)
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (62177 - 62827)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (62803 - 63012)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (63003 - 63131)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (63128 - 63241)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: membrane protein e-14
    /note=
    /note=Start : original

CDS complement (63238 - 63519)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (63554 - 64060)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (64083 - 64208)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: membrane protein e-19
    /note=Sosui : membrane protein 
    /note=
    /note=One membrane protein hit on DeepTMHMM; confirmed by SOSUI
    /note=
    /note=Start : original

CDS complement (64208 - 64453)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein e-46
    /note=
    /note=Start : original

CDS complement (64470 - 64607)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (64604 - 64912)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein e-69
    /note=
    /note=Start : original

CDS complement (64949 - 65371)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (65470 - 65691)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS 66298 - 66447
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: No data
    /note=
    /note=" double check`
    /note=possible deletion BlastP and nothing came up

CDS complement (65842 - 66315)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=help

CDS complement (66312 - 66500)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

CDS complement (66500 - 66664)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original (questionable )

CDS complement (66664 - 66852)
    /note=Phagesdb Function: N/a 
    /note=Phagesdb BLAST: function unknown 
    /note=HHPRED: None of significance 
    /note=NCBI BLAST: hypothetical protein
    /note=
    /note=Start : original

Genes added in gaps (Only added in the DNA Master Minimal file):
•	SEA_FORRESTELL_1 (705-1157): hits with AP2 phages; hypothetical protein
•	SEA_FORRESTELL_22 (12655-12930): hits with AP2 phages; hypothetical protein
•	SEA_FORRESTELL_36 (27443-27652): hits with AP2 phages; hypothetical protein
•	SEA_FORRESTELL_124 (67606-67860; Reverse): hits with AP2 phages; hypothetical protein

Deleted phams in the DNA MASTER minimal file (Genes not deleted in PECAAN)
•	Gene 1: The first gene in PECAAN is reversed from 384 to 68779. This gene does not appear to be annotated in other cluster AP phages. This gene was deleted in the DNA Master minimal file.
•	Gene 20: reverse gene that overlaps with gene 19
•	Gene 92: overlaps with reverse genes 93, 94, and 95. Forward gene in a group of reverse genes.
•	Gene 118 overlaps with gene 120. Forward gene in a group of reverse genes.