CDS 514 - 2106
    /note=The suggested start does not have the best Z or Final scores, but has maximized coding capacity.

CDS 2449 - 2721
    /note=Evidence suggests that this is a hypothetical protein due to the data matching

CDS 5657 - 6199
    /note=Best Z and Final scores.

CDS 6765 - 8387
    /note=This pham is correclated to portal protein in several clusters.

CDS 8745 - 11027
    /note=We chose GM suggested start because it has best Z and Final scores.

CDS 11024 - 11242
    /note=This pham is correlated with the "Ribosome modulation factor" in other sub-cluster. However, this function is not on the official assigned function list.

CDS 11312 - 13897
    /note=GM suggested start has better Z and Final scores.

CDS 16323 - 17153
    /note=There is evidence of this pham been a major capsid pentamer protein. However, just 33% of the phages on the DE1 sub-cluster made the call.

CDS 17823 - 18518
    /note=The 225750 is correlated to major tail protein in several sub-clusters.

CDS 19128 - 19853
    /note=We chose the Glimmer sugested start because it has better Z and Final scores and maximizes coding potential. HHPred has a hit hight percent hit for "Polyketide Synthase System, alpha, beta-Hydrolase Fold, Polyketide Shortening, Retro Claisen Reaction".

CDS 19991 - 20764
    /note=Not the best Z or Final scores, but both GeneMark and Glimmer suggest this start.

CDS 20764 - 21309
    /note=Because of the high correlation numbers, it can be assumed that this gene is a hypothetical protein

CDS 21306 - 21722
    /note=The gene mark shows how gene 31 does not have coding capacity. Percentages of probability and coverage suggests a hypothetical protein to be the function gene 31

CDS 21703 - 22137
    /note=comparing this gene to similar genes show that this gene has no known function

CDS 22797 - 23405
    /note=Evidence suggests possible tail assembly chaperone.

CDS 29287 - 31050
    /note=HHPRED results also show high results for Minor tail protein; Bacteriophage, tail tip, VIRAL PROTEIN.

CDS 31050 - 31607
    /note=We pick this function because several hits on NCBI blat suggest a minor tail protein. However, Phagesdb blast does not recognizes this pham (85415) as a minor tail protein.

CDS 33598 - 33789
    /note=Glimmer sugested start has better Z and Final scores.

CDS 35010 - 35603
    /note=Phagesdb blast does not recognizes this gene as minor tail, but NCBI blast does.

CDS 37558 - 37998
    /note=This is another gene that Phagesdb and NCBI differ in function based on identity and alignment. Phagesdb calls for holin, NCBI for NKF.

CDS 38040 - 38678
    /note=Another gene where Phagesdb and NCBI disagree on function. The top hit on Phgaesdb is for NKF, and NCBI has a hit for minor tail protein with 89.15% identity, 94.32% alignment, and 99.05% coverage.

CDS 40622 - 41746
    /note=The pham #228333 is related to exonuclease and RecE-like exonuclease.

CDS 44217 - 44390
    /note=HHPRED shows AlpA family phage regulatory protein/DNA Binding Protein.

CDS 44390 - 45502
    /note=This pham is also listed as helix-turn-helix dna binding protein

CDS 46120 - 47721
    /note=Low identity on NCBI Blast.

CDS 51013 - 51651
    /note=HHPRED results note a high probability and coverage for Crossover junction endodeoxyribonuclease RuvC.

CDS 58028 - 58291
    /note=Evidence supports a DNA binding protein, an HTH is identified so it is called helix-turn-helix DNA binding protein. The protein hits 2-3 alpha helices in the sequence separated by small spacer regions.

CDS 58288 - 58839
    /note=Also suggests DNA methylase which is synonymous with the chosen function.