CDS 56 - 547
  /gene="1"
  /product="gp1"
  /function="terminase, small subunit"
  /locus tag="MAnor_Draft_1"
    /note=Original Glimmer call @bp 56 has strength 9.4
    /note=SSC: 56-547 CP: no SCS: glimmer ST: NI BLAST-Start: [terminase small subunit [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 2.11393E-113 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.182, -2.2186743274732437, yes F: terminase, small subunit SIF-BLAST: ,,[terminase small subunit [Gordonia phage CherryonLim] ],,YP_010663136,100.0,2.11393E-113 SIF-HHPRED:  SIF-Syn: 
    /note=1) Favored by CherryonLim
    /note=2) closest related called terminase, small subunit

CDS 640 - 810
  /gene="2"
  /product="gp2"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_2"
    /note=Original Glimmer call @bp 640 has strength 5.93
    /note=SSC: 640-810 CP: no SCS: glimmer ST: NI BLAST-Start: [hypothetical protein PP992_gp02 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 3.3021E-28 GAP: 92 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.861, -4.9224435286090085, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp02 [Gordonia phage Pons] ],,YP_010662989,100.0,3.3021E-28 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer 640 
    /note=2) function unknown

CDS 666 - 890
  /gene="3"
  /product="gp3"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_3"
    /note=Genemark calls start at 666
    /note=SSC: 666-890 CP: no SCS: genemark ST: NI BLAST-Start: [hypothetical protein PP993_gp04 [Gordonia phage Mayweather] ],,NCBI, q3:s1 97.2973% 4.91772E-41 GAP: -145 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.903, -5.885737104557237, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp04 [Gordonia phage Mayweather] ],,YP_010663065,100.0,4.91772E-41 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score: not listed 
    /note=2) favored by Mayweather

CDS 897 - 2573
  /gene="4"
  /product="gp4"
  /function="terminase, large subunit"
  /locus tag="MAnor_Draft_4"
    /note=Original Glimmer call @bp 897 has strength 5.47; Genemark calls start at 948
    /note=SSC: 897-2573 CP: no SCS: both-gl ST: NI BLAST-Start: [terminase large subunit [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: 6 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.967, -4.841703219753294, no F: terminase, large subunit SIF-BLAST: ,,[terminase large subunit [Gordonia phage Pons] ],,YP_010662991,99.8208,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer start: 897 
    /note=2) favored by Pons

CDS 2570 - 4018
  /gene="5"
  /product="gp5"
  /function="portal protein"
  /locus tag="MAnor_Draft_5"
    /note=Original Glimmer call @bp 2570 has strength 9.67; Genemark calls start at 2570
    /note=SSC: 2570-4018 CP: no SCS: both ST: NI BLAST-Start: [portal protein [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.231, -5.453403796545295, yes F: portal protein SIF-BLAST: ,,[portal protein [Gordonia phage Pons] ],,YP_010662992,98.9627,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer start 2570 
    /note=2) favored by mayweather

CDS 3999 - 4592
  /gene="6"
  /product="gp6"
  /function="capsid maturation protease"
  /locus tag="MAnor_Draft_6"
    /note=Original Glimmer call @bp 3969 has strength 6.32; Genemark calls start at 3999
    /note=SSC: 3999-4592 CP: no SCS: both-gm ST: NI BLAST-Start: [head maturation protease [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 4.22007E-144 GAP: -20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 0.95, -6.973247775239861, no F: capsid maturation protease SIF-BLAST: ,,[head maturation protease [Gordonia phage Mayweather] ],,YP_010663068,99.4924,4.22007E-144 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 3969 
    /note=2) favored by mayweather
    /note=
    /note=Melton: Edited starting position for better alignment

CDS 4636 - 5067
  /gene="7"
  /product="gp7"
  /function="scaffolding protein"
  /locus tag="MAnor_Draft_7"
    /note=Original Glimmer call @bp 4621 has strength 16.12; Genemark calls start at 4621
    /note=SSC: 4636-5067 CP: no SCS: both-cs ST: NI BLAST-Start: [scaffolding protein [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 8.12225E-96 GAP: 43 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.948, -2.7254235724530456, yes F: scaffolding protein SIF-BLAST: ,,[scaffolding protein [Gordonia phage SheckWes] ],,YP_010663279,99.3007,8.12225E-96 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 4621
    /note=2) favored by sheckwes

CDS 5091 - 6050
  /gene="8"
  /product="gp8"
  /function="major capsid protein"
  /locus tag="MAnor_Draft_8"
    /note=Original Glimmer call @bp 5091 has strength 16.19; Genemark calls start at 5091
    /note=SSC: 5091-6050 CP: no SCS: both ST: NI BLAST-Start: [major capsid protein [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 0.0 GAP: 23 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.182, -2.5074698667202133, yes F: major capsid protein SIF-BLAST: ,,[major capsid protein [Gordonia phage SheckWes] ],,YP_010663280,99.373,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer start: 5091
    /note=2) favored by SheckWes

CDS 6164 - 6691
  /gene="9"
  /product="gp9"
  /function="head-to-tail adaptor"
  /locus tag="MAnor_Draft_9"
    /note=Original Glimmer call @bp 6164 has strength 11.1; Genemark calls start at 6164
    /note=SSC: 6164-6691 CP: no SCS: both ST: NI BLAST-Start: [head-tail adaptor [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 7.54521E-125 GAP: 113 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.391, -3.893834241316366, no F: head-to-tail adaptor SIF-BLAST: ,,[head-tail adaptor [Gordonia phage Pons] ],,YP_010662996,100.0,7.54521E-125 SIF-HHPRED:  SIF-Syn: 
    /note=1) gimmer start: 6164
    /note=2) favored by CherryonLim

CDS 6691 - 7032
  /gene="10"
  /product="gp10"
  /function="head-to-tail stopper"
  /locus tag="MAnor_Draft_10"
    /note=Original Glimmer call @bp 6691 has strength 4.26; Genemark calls start at 6691
    /note=SSC: 6691-7032 CP: no SCS: both ST: NI BLAST-Start: [head-tail adaptor [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 2.81105E-73 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.006, -4.699146537919, yes F: head-to-tail stopper SIF-BLAST: ,,[head-tail adaptor [Gordonia phage Pons] ],,YP_010662997,99.115,2.81105E-73 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 6691
    /note=2) favored by pons

CDS 7025 - 7297
  /gene="11"
  /product="gp11"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_11"
    /note=Original Glimmer call @bp 7037 has strength 5.96; Genemark calls start at 7025
    /note=SSC: 7025-7297 CP: no SCS: both-gm ST: NI BLAST-Start: [neck protein [Gordonia phage Lauer] ],,NCBI, q1:s10 100.0% 1.45804E-58 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.135, -2.3335289980954053, yes F: Hypothetical Protein SIF-BLAST: ,,[neck protein [Gordonia phage Lauer] ],,YP_010663217,90.9091,1.45804E-58 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 7037
    /note=2) favored by BigChungus

CDS 7284 - 7694
  /gene="12"
  /product="gp12"
  /function="tail terminator"
  /locus tag="MAnor_Draft_12"
    /note=Original Glimmer call @bp 7329 has strength 1.51; Genemark calls start at 7284
    /note=SSC: 7284-7694 CP: no SCS: both-gm ST: NI BLAST-Start: [tail terminator [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 2.77171E-96 GAP: -14 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.154, -4.450639800659582, no F: tail terminator SIF-BLAST: ,,[tail terminator [Gordonia phage Pons] ],,YP_010662999,99.2647,2.77171E-96 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 7329
    /note=2) favored by pons
    /note=
    /note=Melton: Moved starting position back

CDS 7697 - 8536
  /gene="13"
  /product="gp13"
  /function="major tail protein"
  /locus tag="MAnor_Draft_13"
    /note=Original Glimmer call @bp 7697 has strength 14.7; Genemark calls start at 7697
    /note=SSC: 7697-8536 CP: no SCS: both ST: NI BLAST-Start: [major tail protein [Gordonia phage Mayweather] ],,NCBI, q1:s1 99.2832% 0.0 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.182, -2.2186743274732437, yes F: major tail protein SIF-BLAST: ,,[major tail protein [Gordonia phage Mayweather] ],,YP_010663075,98.2014,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 7697
    /note=2) favored by mayweather

CDS 8635 - 8910
  /gene="14"
  /product="gp14"
  /function="tail assembly chaperone"
  /locus tag="MAnor_Draft_14"
    /note=Original Glimmer call @bp 8635 has strength 15.81; Genemark calls start at 8635
    /note=SSC: 8635-8910 CP: no SCS: both ST: NI BLAST-Start: [tail assembly chaperone [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.55991E-58 GAP: 98 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.948, -4.82199726607293, no F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Gordonia phage Pons] ],,YP_010663002,100.0,1.55991E-58 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 8635
    /note=2) favored by mayweather

CDS 8874 - 9383
  /gene="15"
  /product="gp15"
  /function="tail assembly chaperone"
  /locus tag="MAnor_Draft_15"
    /note=Original Glimmer call @bp 8967 has strength 13.18; Genemark calls start at 8874
    /note=SSC: 8874-9383 CP: no SCS: both-gm ST: NI BLAST-Start: [tail assembly chaperone [Gordonia phage Pons] ],,NCBI, q10:s90 94.6746% 1.22049E-109 GAP: -37 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.623, -4.93394923336279, no F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Gordonia phage Pons] ],,YP_010663001,64.257,1.22049E-109 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 8967 
    /note=2) favored by CherryonLim

CDS 9376 - 14475
  /gene="16"
  /product="gp16"
  /function="tape measure protein"
  /locus tag="MAnor_Draft_16"
    /note=Original Glimmer call @bp 9376 has strength 8.41; Genemark calls start at 9376
    /note=SSC: 9376-14475 CP: no SCS: both ST: NI BLAST-Start: [tail length tape measure protein [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 0.0 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.136, -4.34663776219455, no F: tape measure protein SIF-BLAST: ,,[tail length tape measure protein [Gordonia phage SheckWes] ],,YP_010663288,99.5286,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 9376 
    /note=2) favored by SheckWes

CDS 14472 - 15428
  /gene="17"
  /product="gp17"
  /function="minor tail protein"
  /locus tag="MAnor_Draft_17"
    /note=Original Glimmer call @bp 14517 has strength 5.94; Genemark calls start at 14472
    /note=SSC: 14472-15428 CP: no SCS: both-gm ST: NI BLAST-Start: [minor tail protein [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.891, -3.1164791313608173, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Pons] ],,YP_010663004,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score  14517 
    /note=2) favored by mayweather

CDS 15422 - 17119
  /gene="18"
  /product="gp18"
  /function="minor tail protein"
  /locus tag="MAnor_Draft_18"
    /note=Original Glimmer call @bp 15422 has strength 9.92; Genemark calls start at 15422
    /note=SSC: 15422-17119 CP: no SCS: both ST: NI BLAST-Start: [minor tail protein [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -7 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.438, -3.7763825200079637, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Pons] ],,YP_010663005,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 15422
    /note=2) favored by pons

CDS 17120 - 17512
  /gene="19"
  /product="gp19"
  /function="minor tail protein"
  /locus tag="MAnor_Draft_19"
    /note=Original Glimmer call @bp 17120 has strength 10.56; Genemark calls start at 17120
    /note=SSC: 17120-17512 CP: no SCS: both ST: NI BLAST-Start: [minor tail protein [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.34852E-90 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.369, -6.094669753659028, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Pons] ],,YP_010663006,100.0,1.34852E-90 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 17120
    /note=2) favored by pons

CDS 17509 - 18096
  /gene="20"
  /product="gp20"
  /function="lysin A, L-Ala-D-Glu peptidase domain"
  /locus tag="MAnor_Draft_20"
    /note=Original Glimmer call @bp 17509 has strength 12.79; Genemark calls start at 17509
    /note=SSC: 17509-18096 CP: no SCS: both ST: NI BLAST-Start: [endolysin [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 2.14918E-141 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.536, -4.16062280240617, yes F: lysin A, L-Ala-D-Glu peptidase domain SIF-BLAST: ,,[endolysin [Gordonia phage Mayweather] ],,YP_010663082,100.0,2.14918E-141 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 17509
    /note=2) favored by mayweather

CDS 18096 - 19067
  /gene="21"
  /product="gp21"
  /function="lysin A, glycosyl hydrolase domain"
  /locus tag="MAnor_Draft_21"
    /note=Original Glimmer call @bp 18087 has strength 13.06; Genemark calls start at 18096
    /note=SSC: 18096-19067 CP: no SCS: both-gm ST: NI BLAST-Start: [endolysin [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.546, -4.5888612675729545, no F: lysin A, glycosyl hydrolase domain SIF-BLAST: ,,[endolysin [Gordonia phage Mayweather] ],,YP_010663083,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 18087
    /note=2) favored by mayweather
    /note=
    /note=Melton: Moved position and changed funciton

CDS 19067 - 19420
  /gene="22"
  /product="gp22"
  /function="holin"
  /locus tag="MAnor_Draft_22"
    /note=Original Glimmer call @bp 19067 has strength 8.96; Genemark calls start at 19067
    /note=SSC: 19067-19420 CP: no SCS: both ST: NI BLAST-Start: [holin [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 2.55085E-72 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.536, -3.5707972674952195, yes F: holin SIF-BLAST: ,,[holin [Gordonia phage Mayweather] ],,YP_010663084,100.0,2.55085E-72 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 19067
    /note=2) favored by mayweather

CDS 19493 - 19729
  /gene="23"
  /product="gp23"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_23"
    /note=Original Glimmer call @bp 19508 has strength 1.05; Genemark calls start at 19508
    /note=SSC: 19493-19729 CP: no SCS: both-cs ST: NI BLAST-Start: [hypothetical protein PP992_gp23 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 8.02532E-48 GAP: 72 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.028, -4.654324162979347, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp23 [Gordonia phage Pons] ],,YP_010663010,100.0,8.02532E-48 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 19508
    /note=2) favored by cherryonlim
    /note=
    /note=Melton: Moved position

CDS 19726 - 20289
  /gene="24"
  /product="gp24"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_24"
    /note=Original Glimmer call @bp 19726 has strength 7.22; Genemark calls start at 19726
    /note=SSC: 19726-20289 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP994_gp25 [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 8.4532E-125 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.978, -2.6623718267059564, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP994_gp25 [Gordonia phage CherryonLim] ],,YP_010663160,95.7219,8.4532E-125 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer score 19726
    /note=2) favored by cherryonlim

CDS 20290 - 20955
  /gene="25"
  /product="gp25"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_25"
    /note=Original Glimmer call @bp 20290 has strength 6.67; Genemark calls start at 20290
    /note=SSC: 20290-20955 CP: no SCS: both ST: NI BLAST-Start: [minor tail protein [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 4.07673E-159 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.313, -3.976650358801626, no F: Hypothetical Protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Mayweather] ],,YP_010663087,100.0,4.07673E-159 SIF-HHPRED:  SIF-Syn: 
    /note=1) Glimmer: 20290
    /note=2) Favored by Lauer

CDS 20952 - 21293
  /gene="26"
  /product="gp26"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_26"
    /note=Original Glimmer call @bp 20952 has strength 7.4; Genemark calls start at 20952
    /note=SSC: 20952-21293 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp26 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.36522E-76 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.84, -5.030707817577878, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp26 [Gordonia phage Pons] ],,YP_010663013,100.0,1.36522E-76 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 20952
    /note=2. Favored by Mayweather

CDS 21271 - 22515
  /gene="27"
  /product="gp27"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_27"
    /note=Original Glimmer call @bp 21253 has strength 2.99; Genemark calls start at 21271
    /note=SSC: 21271-22515 CP: no SCS: both-gm ST: NI BLAST-Start: [virion structural protein [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 0.0 GAP: -23 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.057, -4.654077828316241, no F: Hypothetical Protein SIF-BLAST: ,,[virion structural protein [Gordonia phage Mayweather] ],,YP_010663089,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 21253
    /note=2. Favored by Mayweather
    /note=
    /note=Melton: Changed position

CDS 22547 - 22870
  /gene="28"
  /product="gp28"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_28"
    /note=Original Glimmer call @bp 22547 has strength 8.37; Genemark calls start at 22547
    /note=SSC: 22547-22870 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp29 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 2.18804E-71 GAP: 31 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.643, -3.284949965096066, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp29 [Gordonia phage Mayweather] ],,YP_010663090,100.0,2.18804E-71 SIF-HHPRED:  SIF-Syn: 
    /note=1. Gimmer Start: 22547
    /note=2. Favored by Mayweather

CDS 22872 - 24305
  /gene="29"
  /product="gp29"
  /function="minor tail protein"
  /locus tag="MAnor_Draft_29"
    /note=Original Glimmer call @bp 22872 has strength 4.16; Genemark calls start at 22872
    /note=SSC: 22872-24305 CP: no SCS: both ST: NI BLAST-Start: [tail protein [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.488, -4.137199935798589, yes F: minor tail protein SIF-BLAST: ,,[tail protein [Gordonia phage Pons] ],,YP_010663016,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 22872
    /note=2. Favored by Mayweather

CDS 24302 - 24733
  /gene="30"
  /product="gp30"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_30"
    /note=Original Glimmer call @bp 24302 has strength 13.44; Genemark calls start at 24302
    /note=SSC: 24302-24733 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp31 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 1.11157E-92 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.99, -4.652447766684996, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp31 [Gordonia phage Mayweather] ],,YP_010663092,100.0,1.11157E-92 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 24302
    /note=2. Favored by Mayweather

CDS complement (24798 - 24983)
  /gene="31"
  /product="gp31"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_31"
    /note=Original Glimmer call @bp 25022 has strength 0.36
    /note=SSC: 24983-24798 CP: no SCS: glimmer-cs ST: NI BLAST-Start: [hypothetical protein SEA_SAMPSON_3 [Gordonia Phage Sampson] ],,NCBI, q3:s8 91.8033% 3.69085E-30 GAP: 99 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.214, -2.741655139666096, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SAMPSON_3 [Gordonia Phage Sampson] ],,UTN91743,76.4706,3.69085E-30 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 25022
    /note=2. Favored by Bizzy

CDS complement (25083 - 25346)
  /gene="32"
  /product="gp32"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_32"
    /note=Original Glimmer call @bp 25346 has strength 15.03; Genemark calls start at 25346
    /note=SSC: 25346-25083 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_ELINAL_34 [Gordonia phage Elinal]],,NCBI, q1:s1 100.0% 9.07986E-49 GAP: 91 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.171, -4.801936092881806, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ELINAL_34 [Gordonia phage Elinal]],,WNN94165,97.7011,9.07986E-49 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 25346
    /note=2. PotPie_Draft

CDS complement (25438 - 25776)
  /gene="33"
  /product="gp33"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_33"
    /note=Original Glimmer call @bp 25740 has strength 8.41; Genemark calls start at 25776
    /note=SSC: 25776-25438 CP: no SCS: both-gm ST: NI BLAST-Start: [hypothetical protein PP992_gp34 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.6242E-74 GAP: 152 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.94, -4.898695705888726, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp34 [Gordonia phage Pons] ],,YP_010663021,95.5357,1.6242E-74 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 25740
    /note=2. Favored by Pons
    /note=
    /note=Melton: Changed position

CDS complement (25929 - 26462)
  /gene="34"
  /product="gp34"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="MAnor_Draft_34"
    /note=Original Glimmer call @bp 26462 has strength 1.5; Genemark calls start at 26462
    /note=SSC: 26462-25929 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP996_gp35 [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 6.48575E-117 GAP: 64 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.909, -4.884705646117852, no F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[hypothetical protein PP996_gp35 [Gordonia phage SheckWes] ],,YP_010663308,97.7401,6.48575E-117 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 26462
    /note=2. Favored by SteamedHams

CDS complement (26527 - 27009)
  /gene="35"
  /product="gp35"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_35"
    /note=Original Glimmer call @bp 27009 has strength 13.74; Genemark calls start at 27009
    /note=SSC: 27009-26527 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp37 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 2.39032E-109 GAP: 75 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.045, -2.442961286954254, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp37 [Gordonia phage Mayweather] ],,YP_010663098,99.3789,2.39032E-109 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 27009
    /note=2. Favored by Mayweather
    /note=
    /note=Melton: Changed function

CDS complement (27085 - 27792)
  /gene="36"
  /product="gp36"
  /function="SprT-like protease"
  /locus tag="MAnor_Draft_36"
    /note=Original Glimmer call @bp 27792 has strength 13.79; Genemark calls start at 27792
    /note=SSC: 27792-27085 CP: no SCS: both ST: NI BLAST-Start: [SprT-like protease [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 4.14724E-172 GAP: 218 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.797, -2.9625409806968013, yes F: SprT-like protease SIF-BLAST: ,,[SprT-like protease [Gordonia phage CherryonLim] ],,YP_010663172,98.7234,4.14724E-172 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 27792
    /note=2. Favored by CherryonLim

CDS complement (28011 - 28382)
  /gene="37"
  /product="gp37"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_37"
    /note=Original Glimmer call @bp 28382 has strength 17.28; Genemark calls start at 28382
    /note=SSC: 28382-28011 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp37 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 6.45371E-76 GAP: 167 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.045, -2.442961286954254, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp37 [Gordonia phage Pons] ],,YP_010663024,100.0,6.45371E-76 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 28382
    /note=2. Favored by Cherryon Lim

CDS 28550 - 28921
  /gene="38"
  /product="gp38"
  /function="helix-turn-helix DNA binding domain, MerR-like"
  /locus tag="MAnor_Draft_38"
    /note=Original Glimmer call @bp 28550 has strength 11.16; Genemark calls start at 28550
    /note=SSC: 28550-28921 CP: no SCS: both ST: NI BLAST-Start: [MerR-like helix-turn-helix DNA binding protein [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 1.20217E-81 GAP: 167 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.41, -4.125079303122735, yes F: helix-turn-helix DNA binding domain, MerR-like SIF-BLAST: ,,[MerR-like helix-turn-helix DNA binding protein [Gordonia phage CherryonLim] ],,YP_010663174,100.0,1.20217E-81 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 28850
    /note=2. Favored by CherryonLim

CDS 28918 - 29013
  /gene="39"
  /product="gp39"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_39"
    /note=Genemark calls start at 28918
    /note=SSC: 28918-29013 CP: no SCS: genemark ST: NI BLAST-Start: [hypothetical protein PP996_gp40 [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 8.53672E-11 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.903, -4.9157003279346805, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp40 [Gordonia phage SheckWes] ],,YP_010663313,100.0,8.53672E-11 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 26462
    /note=2. Favored by SheckWes

CDS complement (29074 - 29358)
  /gene="40"
  /product="gp40"
  /function="Holliday junction resolvase"
  /locus tag="MAnor_Draft_40"
    /note=Original Glimmer call @bp 29358 has strength 10.84; Genemark calls start at 29358
    /note=SSC: 29358-29074 CP: no SCS: both ST: NI BLAST-Start: [endonuclease [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.31206E-60 GAP: 22 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.563, -3.5316035464369326, no F: Holliday junction resolvase SIF-BLAST: ,,[endonuclease [Gordonia phage Pons] ],,YP_010663027,100.0,1.31206E-60 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 29358
    /note=2. Favored by Mayweather

CDS complement (29381 - 29515)
  /gene="41"
  /product="gp41"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_41"
    /note=Original Glimmer call @bp 29515 has strength 7.84
    /note=SSC: 29515-29381 CP: no SCS: glimmer ST: NI BLAST-Start: [hypothetical protein PP996_gp42 [Gordonia phage SheckWes] ],,NCBI, q1:s1 95.4545% 4.44072E-7 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.31, -4.1237215507168505, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp42 [Gordonia phage SheckWes] ],,YP_010663315,52.9412,4.44072E-7 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 29515
    /note=2. Favored by Pons

CDS complement (29515 - 30111)
  /gene="42"
  /product="gp42"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_42"
    /note=Original Glimmer call @bp 30111 has strength 20.56; Genemark calls start at 30111
    /note=SSC: 30111-29515 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp42 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 5.61611E-134 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.136, -4.697746622201849, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp42 [Gordonia phage Pons] ],,YP_010663029,99.0,5.61611E-134 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 30111
    /note=2. Favored by Pons

CDS complement (30115 - 30921)
  /gene="43"
  /product="gp43"
  /function="RecA-like DNA recombinase"
  /locus tag="MAnor_Draft_43"
    /note=Original Glimmer call @bp 30921 has strength 15.17; Genemark calls start at 30921
    /note=SSC: 30921-30115 CP: no SCS: both ST: NI BLAST-Start: [RecA-like DNA recombinase [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 0.0 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.045, -2.442961286954254, yes F: RecA-like DNA recombinase SIF-BLAST: ,,[RecA-like DNA recombinase [Gordonia phage CherryonLim] ],,YP_010663178,100.0,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 30921
    /note=2. Favored by BigChungus

CDS complement (30922 - 31980)
  /gene="44"
  /product="gp44"
  /function="Cas4 exonuclease"
  /locus tag="MAnor_Draft_44"
    /note=Original Glimmer call @bp 31980 has strength 10.62; Genemark calls start at 31980
    /note=SSC: 31980-30922 CP: no SCS: both ST: NI BLAST-Start: [exonuclease [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 0.0 GAP: -20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.045, -2.794070146961553, yes F: Cas4 exonuclease SIF-BLAST: ,,[exonuclease [Gordonia phage CherryonLim] ],,YP_010663179,99.7159,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 31980
    /note=2. Favored by CherryonLim

CDS complement (31961 - 32236)
  /gene="45"
  /product="gp45"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="MAnor_Draft_45"
    /note=Original Glimmer call @bp 32227 has strength 0.57; Genemark calls start at 32236
    /note=SSC: 32236-31961 CP: no SCS: both-gm ST: NI BLAST-Start: [transcriptional regulator [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.04721E-59 GAP: -17 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.135, -2.394485424036831, yes F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[transcriptional regulator [Gordonia phage Pons] ],,YP_010663032,100.0,1.04721E-59 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 32227
    /note=2. Favored by CherryonLim
    /note=
    /note=Melton: changed position

CDS complement (32220 - 34598)
  /gene="46"
  /product="gp46"
  /function="DNA polymerase I"
  /locus tag="MAnor_Draft_46"
    /note=Original Glimmer call @bp 34598 has strength 9.05; Genemark calls start at 34598
    /note=SSC: 34598-32220 CP: no SCS: both ST: NI BLAST-Start: [DNA polymerase I [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.802, -3.032660833718183, no F: DNA polymerase I SIF-BLAST: ,,[DNA polymerase I [Gordonia phage Pons] ],,YP_010663033,99.1162,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 34598
    /note=2. Favored by Pons

CDS complement (34595 - 34789)
  /gene="47"
  /product="gp47"
  /function="deoxycytidylate deaminase"
  /locus tag="MAnor_Draft_47"
    /note=Original Glimmer call @bp 34789 has strength 7.13; Genemark calls start at 34900
    /note=SSC: 34789-34595 CP: no SCS: both-gl ST: NI BLAST-Start: [dCMP deaminase [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 1.97898E-39 GAP: 245 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.557, -3.4645021069762962, no F: deoxycytidylate deaminase SIF-BLAST: ,,[dCMP deaminase [Gordonia phage Mayweather] ],,YP_010663111,100.0,1.97898E-39 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 34789
    /note=2. Favored by Mayweather

CDS complement (35035 - 35832)
  /gene="48"
  /product="gp48"
  /function="lysin B"
  /locus tag="MAnor_Draft_48"
    /note=Original Glimmer call @bp 35832 has strength 6.12; Genemark calls start at 35832
    /note=SSC: 35832-35035 CP: no SCS: both ST: NI BLAST-Start: [endolysin [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.395, -7.5057781051410215, no F: lysin B SIF-BLAST: ,,[endolysin [Gordonia phage Pons] ],,YP_010663035,97.3585,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 35832
    /note=2. Favored by Pons

CDS complement (35829 - 35990)
  /gene="49"
  /product="gp49"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_49"
    /note=Original Glimmer call @bp 35990 has strength 10.87; Genemark calls start at 35990
    /note=SSC: 35990-35829 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp52 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 7.67708E-32 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.669, -4.836169940134607, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp52 [Gordonia phage Mayweather] ],,YP_010663113,100.0,7.67708E-32 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 35990
    /note=2. Favored by CherryonLim

CDS complement (35987 - 36793)
  /gene="50"
  /product="gp50"
  /function="thymidylate synthase"
  /locus tag="MAnor_Draft_50"
    /note=Original Glimmer call @bp 36793 has strength 7.04; Genemark calls start at 36793
    /note=SSC: 36793-35987 CP: no SCS: both ST: NI BLAST-Start: [thymidylate synthase [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.683, -5.648544536651425, no F: thymidylate synthase SIF-BLAST: ,,[thymidylate synthase [Gordonia phage Mayweather] ],,YP_010663114,99.6269,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 31980
    /note=2. Favored by Mayweather

CDS complement (36790 - 37665)
  /gene="51"
  /product="gp51"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_51"
    /note=Original Glimmer call @bp 37665 has strength 6.11; Genemark calls start at 37665
    /note=SSC: 37665-36790 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp54 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.317, -6.063367366410245, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp54 [Gordonia phage Mayweather] ],,YP_010663115,98.9691,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=1) no known function
    /note=2) alignment is good

CDS complement (37665 - 38048)
  /gene="52"
  /product="gp52"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_52"
    /note=Original Glimmer call @bp 38048 has strength 8.84; Genemark calls start at 38048
    /note=SSC: 38048-37665 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp52 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.12446E-82 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.045, -2.583959800616441, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp52 [Gordonia phage Pons] ],,YP_010663039,98.4252,1.12446E-82 SIF-HHPRED:  SIF-Syn: 
    /note=1. Glimmer Start: 38048
    /note=2. Favored by Pons

CDS complement (38041 - 38196)
  /gene="53"
  /product="gp53"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_53"
    /note=Genemark calls start at 38202
    /note=SSC: 38196-38041 CP: no SCS: genemark-cs ST: NI BLAST-Start: [hypothetical protein PP993_gp56 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 6.31239E-29 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.459, -3.7329837339109084, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp56 [Gordonia phage Mayweather] ],,YP_010663117,100.0,6.31239E-29 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 38202
    /note=Favored by : Lauer
    /note=
    /note=Melton: Moved starting postion

CDS complement (38196 - 38426)
  /gene="54"
  /product="gp54"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_54"
    /note=Original Glimmer call @bp 38426 has strength 7.17; Genemark calls start at 38396
    /note=SSC: 38426-38196 CP: no SCS: both-gl ST: NI BLAST-Start: [hypothetical protein PP993_gp57 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 1.26781E-48 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.903, -4.835658240213919, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp57 [Gordonia phage Mayweather] ],,YP_010663118,98.6842,1.26781E-48 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 38426
    /note=Favored by :Mayweather

CDS complement (38430 - 38687)
  /gene="55"
  /product="gp55"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_55"
    /note=Original Glimmer call @bp 38687 has strength 9.65; Genemark calls start at 38687
    /note=SSC: 38687-38430 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp58 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 4.11966E-55 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.347, -6.0621708722992995, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp58 [Gordonia phage Mayweather] ],,YP_010663119,100.0,4.11966E-55 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 38687
    /note=Favored by : Mayweather

CDS complement (38689 - 39150)
  /gene="56"
  /product="gp56"
  /function="dUTPase"
  /locus tag="MAnor_Draft_56"
    /note=Original Glimmer call @bp 39150 has strength 12.81; Genemark calls start at 39159
    /note=SSC: 39150-38689 CP: no SCS: both-gl ST: NI BLAST-Start: [nucleotide pyrophosphohydrolase [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.99412E-109 GAP: -11 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.546, -3.838738740789555, yes F: dUTPase SIF-BLAST: ,,[nucleotide pyrophosphohydrolase [Gordonia phage Pons] ],,YP_010663043,100.0,1.99412E-109 SIF-HHPRED:  SIF-Syn: 
    /note=1) The majority of the phages show the dutpase despite the top being something else
    /note=2) top hit might be outdated

CDS complement (39140 - 39667)
  /gene="57"
  /product="gp57"
  /function="polynucleotide kinase"
  /locus tag="MAnor_Draft_57"
    /note=Original Glimmer call @bp 39667 has strength 13.83; Genemark calls start at 39667
    /note=SSC: 39667-39140 CP: no SCS: both ST: NI BLAST-Start: [thymidylate kinase [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 5.28771E-127 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.182, -2.2364030944336752, yes F: polynucleotide kinase SIF-BLAST: ,,[thymidylate kinase [Gordonia phage Pons] ],,YP_010663044,100.0,5.28771E-127 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 39667
    /note=Favored by : Pons

CDS complement (39669 - 41147)
  /gene="58"
  /product="gp58"
  /function="DNA helicase"
  /locus tag="MAnor_Draft_58"
    /note=Original Glimmer call @bp 41147 has strength 8.66; Genemark calls start at 41147
    /note=SSC: 41147-39669 CP: no SCS: both ST: NI BLAST-Start: [DNA helicase [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.969, -3.5088110057482766, yes F: DNA helicase SIF-BLAST: ,,[DNA helicase [Gordonia phage Pons] ],,YP_010663045,100.0,0.0 SIF-HHPRED:  SIF-Syn: 

CDS complement (41144 - 41593)
  /gene="59"
  /product="gp59"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_59"
    /note=Original Glimmer call @bp 41593 has strength 11.56; Genemark calls start at 41593
    /note=SSC: 41593-41144 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp59 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.2744E-82 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.182, -2.2364030944336752, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp59 [Gordonia phage Pons] ],,YP_010663046,92.1429,1.2744E-82 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 41593
    /note=Favored by : Pons

CDS complement (41593 - 41820)
  /gene="60"
  /product="gp60"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_60"
    /note=Original Glimmer call @bp 41820 has strength 9.14; Genemark calls start at 41820
    /note=SSC: 41820-41593 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP992_gp60 [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 1.09455E-45 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.703, -3.2388291398924656, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP992_gp60 [Gordonia phage Pons] ],,YP_010663047,100.0,1.09455E-45 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 41820
    /note=Favored by : Pons

CDS complement (41820 - 42014)
  /gene="61"
  /product="gp61"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_61"
    /note=Original Glimmer call @bp 42014 has strength 12.06; Genemark calls start at 42014
    /note=SSC: 42014-41820 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp63 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 6.87915E-38 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.32, -4.1022174314215265, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp63 [Gordonia phage Mayweather] ],,YP_010663124,100.0,6.87915E-38 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 42014
    /note=Favored by : Lauer

CDS complement (42011 - 42460)
  /gene="62"
  /product="gp62"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_62"
    /note=Original Glimmer call @bp 42460 has strength 5.73; Genemark calls start at 42460
    /note=SSC: 42460-42011 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP993_gp64 [Gordonia phage Mayweather] ],,NCBI, q1:s1 100.0% 1.49081E-104 GAP: 17 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.447, -6.443814104011265, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP993_gp64 [Gordonia phage Mayweather] ],,YP_010663125,100.0,1.49081E-104 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 42460
    /note=Favored by : CherryonLim

CDS 42478 - 44562
  /gene="63"
  /product="gp63"
  /function="RecA-like DNA recombinase"
  /locus tag="MAnor_Draft_63"
    /note=Original Glimmer call @bp 42478 has strength 10.34; Genemark calls start at 42478
    /note=SSC: 42478-44562 CP: no SCS: both ST: NI BLAST-Start: [RecA-like DNA recombinase [Gordonia phage Pons] ],,NCBI, q1:s1 100.0% 0.0 GAP: 17 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.385, -3.8879567634597363, no F: RecA-like DNA recombinase SIF-BLAST: ,,[RecA-like DNA recombinase [Gordonia phage Pons] ],,YP_010663050,99.8559,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 42478
    /note=Favored by : Pons

CDS 44728 - 45102
  /gene="64"
  /product="gp64"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_64"
    /note=Original Glimmer call @bp 44728 has strength 10.99; Genemark calls start at 44728
    /note=SSC: 44728-45102 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP995_gp57 [Gordonia phage Lauer] ],,NCBI, q1:s1 100.0% 8.99166E-87 GAP: 165 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.846, -2.9392830384527056, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP995_gp57 [Gordonia phage Lauer] ],,YP_010663264,100.0,8.99166E-87 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 44728
    /note=Favored by : Lauer

CDS 45226 - 45507
  /gene="65"
  /product="gp65"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_65"
    /note=Original Glimmer call @bp 45226 has strength 13.23; Genemark calls start at 45226
    /note=SSC: 45226-45507 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP996_gp67 [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 4.37521E-59 GAP: 123 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.135, -2.253486910374644, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp67 [Gordonia phage SheckWes] ],,YP_010663340,100.0,4.37521E-59 SIF-HHPRED:  SIF-Syn: 
    /note=1) Closely related SheckWes
    /note=2) Glimmer Start 45226

CDS 45510 - 45920
  /gene="66"
  /product="gp66"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_66"
    /note=Original Glimmer call @bp 45510 has strength 15.66; Genemark calls start at 45510
    /note=SSC: 45510-45920 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP996_gp68 [Gordonia phage SheckWes] ],,NCBI, q1:s1 97.0588% 6.48784E-77 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.937, -4.904754965500383, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp68 [Gordonia phage SheckWes] ],,YP_010663341,86.7647,6.48784E-77 SIF-HHPRED:  SIF-Syn: 
    /note=1) Closely related to SheckWes
    /note=2) Glimmer start 45510

CDS 45920 - 46105
  /gene="67"
  /product="gp67"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_67"
    /note=Original Glimmer call @bp 45920 has strength 7.18; Genemark calls start at 45920
    /note=SSC: 45920-46105 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP996_gp70 [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 2.4584E-35 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.312, -6.726470621079688, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp70 [Gordonia phage SheckWes] ],,YP_010663343,96.7213,2.4584E-35 SIF-HHPRED:  SIF-Syn: 
    /note=1) Closely Related to SheckWes
    /note=2) Glimmer Start 45920

CDS 46102 - 46515
  /gene="68"
  /product="gp68"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_68"
    /note=Original Glimmer call @bp 46102 has strength 14.83; Genemark calls start at 46102
    /note=SSC: 46102-46515 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein PP996_gp71 [Gordonia phage SheckWes] ],,NCBI, q1:s1 100.0% 2.59691E-95 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.214, -2.230514797657003, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp71 [Gordonia phage SheckWes] ],,YP_010663344,100.0,2.59691E-95 SIF-HHPRED:  SIF-Syn: 
    /note=1) Closely related to SheckWes
    /note=2) Glimmer Start 46102

CDS 46512 - 46916
  /gene="69"
  /product="gp69"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_69"
    /note=Original Glimmer call @bp 46512 has strength 6.8
    /note=SSC: 46512-46916 CP: no SCS: glimmer ST: NI BLAST-Start: [hypothetical protein PP996_gp72 [Gordonia phage SheckWes] ],,NCBI, q3:s2 98.5075% 1.72998E-88 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.159, -5.127289457927852, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP996_gp72 [Gordonia phage SheckWes] ],,YP_010663345,97.7444,1.72998E-88 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 46512
    /note=Favored by : SheckWes

CDS 46700 - 46993
  /gene="70"
  /product="gp70"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_70"
    /note=Genemark calls start at 46784
    /note=SSC: 46700-46993 CP: no SCS: genemark-cs ST: NI BLAST-Start: [hypothetical protein SEA_ELINAL_72 [Gordonia phage Elinal]],,NCBI, q1:s1 98.9691% 1.53865E-54 GAP: -217 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.969, -3.5088110057482766, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ELINAL_72 [Gordonia phage Elinal]],,WNN94202,93.8144,1.53865E-54 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 46784
    /note=Favored by : PotPie_ Draft
    /note=
    /note=Melton: Moved starting position

CDS 47155 - 47424
  /gene="71"
  /product="gp71"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_71"
    /note=Original Glimmer call @bp 46990 has strength 7.43; Genemark calls start at 46990
    /note=SSC: 47155-47424 CP: no SCS: both-cs ST: NI BLAST-Start: [hypothetical protein PP998_gp72 [Gordonia phage Vine] ],,NCBI, q4:s6 96.6292% 2.11067E-44 GAP: 161 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.045, -3.095100142625534, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP998_gp72 [Gordonia phage Vine] ],,YP_010663489,80.6122,2.11067E-44 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 46990
    /note=Favored by : Vine
    /note=
    /note=Melton: Changed start

CDS 47,408 - 47677
 /gene="72"
 /product="gp72"
 /function="Hypothetical Protein"
 /locus tag="MAnor_Draft_72"

CDS complement (48039 - 48299)
  /gene="73"
  /product="gp73"
  /function="Hypothetical Protein"
  /locus tag="MAnor_Draft_73"
    /note=Original Glimmer call @bp 48221 has strength 2.7
    /note=SSC: 48299-48039 CP: no SCS: glimmer-cs ST: NI BLAST-Start: [hypothetical protein PP994_gp72 [Gordonia phage CherryonLim] ],,NCBI, q1:s1 100.0% 5.26385E-46 GAP: 0 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.516, -3.550681626529345, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PP994_gp72 [Gordonia phage CherryonLim] ],,YP_010663207,91.8605,5.26385E-46 SIF-HHPRED:  SIF-Syn: 
    /note=Glimmer Start: 48221
    /note=Favored by : CherryonLim
    /note=
    /note=Melton: Changed start