CDS 131 - 607 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, but Start 16 has no MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in phagesDB, GenBank, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 690 - 2330 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 88 @597 has 6 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? n /note=7. Does the gene have strong evidence checked in phagesDB, GenBank, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 2335 - 3684 /note=portal protein 220965 A1 54 75 /note=portal protein 220965 AY 17 24 /note=portal protein 220965 FQ 1 1 /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator- no /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? n /note=Start 76 CDS 3687 - 4901 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 13 @3687 has 27 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 13 CDS 5021 - 5530 /note=scaffolding protein 224404 L1 19 28 /note=scaffolding protein 224765 AY 17 25 /note=scaffolding protein 224404 L3 15 22 /note=scaffolding protein 224228 K2 9 13 /note=scaffolding protein 217759 BD2 5 7 /note=scaffolding protein 224404 L2 1 1 /note=scaffolding protein 220989 FQ 1 1 /note=scaffolding protein 225350 AY 1 1 /note=Start 7 34 out of 34 /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 7 @5024 has 17 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS 5562 - 5957 /note=Start 4 /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 4 @5562 has 119 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS 5974 - 7014 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 4 @5974 has 111 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does it have strong evidence checked in phagesDB, GenBank, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by 7 and 8? y /note= /note=For tRNA genes: Did both Aragorn and tRNAScan SE call this gene? CDS 7027 - 7365 /note=YP_010655730 hypothetical protein PP634_gp09 [Arthrobacter phage Richie] >gb|AYN58837.1| hypothetical protein PBI_RICHIE_9 [Arthrobacter phage Richie] >gb|UVF60971.1| hypothetical protein SEA_GORPY_9 [Arthrobacter phage Gorpy] >gb|UVK61956.1| hypothetical protein SEA_SAKAI_9 [Arthrobacter phage Sakai] >gb|XIJ69227.1| hypothetical protein SEA_BENCHSCRAPER_9 [Arthrobacter phage BenchScraper] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 1 @7027 has 18 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? n /note=Start 2 CDS 7382 - 7741 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 9 @7382 has 567 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 10 CDS 7738 - 8139 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 19 @7792 has 1 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? n /note=Start 19 100% CDS 8136 - 8519 /note=tape measure protein 222858 F1 28 82 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 4 @8136 has 29 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 4 100% CDS 8501 - 8914 /note=tail terminator 223200 AY 17 59 /note=tail terminator 223200 FA 9 31 /note=tail terminator 223200 FQ 2 7 /note=tail terminator 1057 EE 1 3 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 9 @8516 has 24 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8?y /note=Start 9 CDS 8961 - 9146 /note=YP_010655735 hypothetical protein PP634_gp14 [Arthrobacter phage Richie] >ref|YP_010655833.1| hypothetical protein PP635_gp14 [Arthrobacter phage Auxilium] >gb|UVF60976.1| hypothetical protein SEA_GORPY_14 [Arthrobacter phage Gorpy] >gb|UVK61961.1| hypothetical protein SEA_SAKAI_14 [Arthrobacter phage Sakai] >gb|XEN13631.1| hypothetical protein SEA_RAPHAELLA_14 [Arthrobacter phage Raphaella] >gb|XIJ69232.1| hypothetical protein SEA_BENCHSCRAPER_14 [Arthrobacter phage BenchScraper] >gb|AYN55794.1| hypothetical protein PBI_AUXILIUM_14 [Arthrobacter phage Auxilium] 100 100 /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 2 @8961 has 25 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note= /note=Start 2 100% CDS 9139 - 9654 /note=major tail protein 223221 AY 16 23 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 3 @9139 has 25 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 3 CDS 9744 - 10280 /note=tail assembly chaperone 86522 AY 16 21 /note=tail assembly chaperone 87008 AY 15 20 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 6 @9744 has 23 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note= /note=Start 6 /note= /note=Looked for possible programmed translational frameshift from gene 15 to gene 16. Near end of gene 15 at 10229, there is CCCTTTTT, a slippery sequence that can allow a +2 frameshift, which puts in frame with gene 16 that starts at 10424. CDS join(9744..10229,10229..10627) /note=tail assembly chaperone 87008 AY 15 60 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=Start 8 100% /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 8 @10424 has 1 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note= /note=Looked for possible programmed translational frameshift from gene 15 to gene 16. Near end of gene 15 at 10229, there is CCCTTTTT, a slippery sequence that can allow a +2 frameshift, which puts in frame with gene 16 that starts at 10424. CDS complement (10624 - 10863) /note=YP_010655739 hypothetical protein PP634_gp18 [Arthrobacter phage Richie] >gb|UVF60980.1| membrane protein [Arthrobacter phage Gorpy] >gb|UVK61965.1| membrane protein [Arthrobacter phage Sakai] >gb|UYL86575.1| hypothetical protein SEA_RADFAD_18 [Arthrobacter phage RadFad] >gb|WNM64505.1| hypothetical protein SEA_MIDNIGHTRAIN_18 [Arthrobacter phage MidnightRain] >gb|XIJ69236.1| hypothetical protein SEA_BENCHSCRAPER_18 [Arthrobacter phage BenchScraper] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 11 @10863 has 8 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note= /note=Start 11 CDS 10936 - 14877 /note=tape measure protein 3222 EF 34 50 /note=tape measure protein 223180 AY 18 26 /note=tape measure protein 223180 FA 9 13 /note=tape measure protein 223742 Y 2 3 /note=tape measure protein 223180 FQ 2 3 /note=tape measure protein 223180 FJ 2 3 /note=tape measure protein 19636 FG 1 1 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator- yes (Start: 21 @10936 has 25 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 21 CDS 14877 - 15704 /note=minor tail protein 85940 AY 16 28 /note=minor tail protein 85940 AS2 11 19 /note=minor tail protein 85940 FA 9 16 /note=minor tail protein 85940 AS3 7 12 /note=minor tail protein 85940 AS1 4 7 /note=minor tail protein 203346 AL 4 7 /note=minor tail protein 89339 AS1 3 5 /note=minor tail protein 203346 AS1 2 4 /note=minor tail protein 203346 FM 1 2 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator- yes start:1 @14877 has 47 MA`s /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 1 CDS 15716 - 17017 /note=minor tail protein 217745 AY 16 28 /note=minor tail protein 217745 AS2 11 19 /note=minor tail protein 217745 AS1 9 16 /note=minor tail protein 217745 FA 9 16 /note=minor tail protein 217745 AS3 7 12 /note=minor tail protein 217745 AL 5 9 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 4 @15716 has 63 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 23 CDS 17026 - 17985 /note=minor tail protein 221281 AY 16 30 /note=minor tail protein 221281 AS2 11 20 /note=minor tail protein 221281 AS1 9 17 /note=minor tail protein 221281 FA 9 17 /note=minor tail protein 221281 AS3 7 13 /note=minor tail protein 221281 FM 1 2 /note=minor tail protein 221281 AL 1 2 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator-y (Start:15 @17026 has 44 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 15 CDS 17985 - 18644 /note=minor tail protein 221256 AK 41 59 /note=minor tail protein 86524 AY 15 22 /note=minor tail protein 86524 FA 8 12 /note=minor tail protein 221256 FF 4 6 /note=minor tail protein 221256 FJ 1 1 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 8 @17985 has 25 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 8 100% CDS 18655 - 18981 /note=YP_010656113 hypothetical protein PP638_gp79 [Arthrobacter phage Isolde] >gb|UVF60986.1| membrane protein [Arthrobacter phage Gorpy] >gb|UVK61971.1| membrane protein [Arthrobacter phage Sakai] >gb|XEN13641.1| membrane protein [Arthrobacter phage Raphaella] >gb|XEN18622.1| hypothetical protein SEA_BILLYTP_24 [Arthrobacter phage BillyTP] >gb|XIJ70512.1| membrane protein [Arthrobacter phage Phrank15] 100 100 /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? No, GTG /note=f. Does it have a gap of -1, -4, or a small positive? Y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 3 @18655 has 13 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS 18956 - 19189 /note=YP_010656114 No 2023-02-08 hypothetical protein PP638_gp78 [Arthrobacter phage Isolde] >gb|UVF60987.1| hypothetical protein SEA_GORPY_25 [Arthrobacter phage Gorpy] >gb|UVK61972.1| hypothetical protein SEA_SAKAI_25 [Arthrobacter phage Sakai] >gb|XEN13642.1| hypothetical protein SEA_RAPHAELLA_25 [Arthrobacter phage Raphaella] >gb|XEN18623.1| hypothetical protein SEA_BILLYTP_25 [Arthrobacter phage BillyTP] >gb|XIJ70513.1| hypothetical protein SEA_PHRANK15_24 [Arthrobacter phage Phrank15] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 8 @18956 has 13 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 8 100% CDS 19186 - 19497 /note=holin 219841 AO2 6 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 1 @19186 has 13 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 1 100% CDS 19494 - 20441 /note=endolysin 192688 AY 10 19 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y and it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y(Start: 23 @19494 has 7 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 24 CDS 20453 - 20761 /note=YP_010656117 hypothetical protein PP638_gp75 [Arthrobacter phage Isolde] >gb|UVF60990.1| membrane protein [Arthrobacter phage Gorpy] >gb|UVK61975.1| membrane protein [Arthrobacter phage Sakai] >gb|XEN13645.1| membrane protein [Arthrobacter phage Raphaella] >gb|XIJ70516.1| membrane protein [Arthrobacter phage Phrank15] >gb|AYR00997.1| hypothetical protein PBI_ISOLDE_28 [Arthrobacter phage Isolde] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 40 @20453 has 22 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 40 CDS 20772 - 21077 /note=UVF60991 hypothetical protein SEA_GORPY_29 [Arthrobacter phage Gorpy] >gb|UVK61976.1| hypothetical protein SEA_SAKAI_29 [Arthrobacter phage Sakai] >gb|XEN13646.1| hypothetical protein SEA_RAPHAELLA_29 [Arthrobacter phage Raphaella] >gb|XEN18627.1| hypothetical protein SEA_BILLYTP_29 [Arthrobacter phage BillyTP] >gb|XIJ70517.1| hypothetical protein SEA_PHRANK15_28 [Arthrobacter phage Phrank15] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 4 @20772 has 25 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 4 100% CDS 21074 - 21448 /note=YP_010656119 No 2023-02-08 tail protein tail protein [Arthrobacter phage Isolde] >gb|UVF60992.1| hypothetical protein SEA_GORPY_30 [Arthrobacter phage Gorpy] >gb|UVK61977.1| hypothetical protein SEA_SAKAI_30 [Arthrobacter phage Sakai] >gb|UYL86587.1| hypothetical protein SEA_RADFAD_30 [Arthrobacter phage RadFad] >gb|WNM64517.1| hypothetical protein SEA_MIDNIGHTRAIN_30 [Arthrobacter phage MidnightRain] >gb|XEN13647.1| hypothetical protein SEA_RAPHAELLA_30 [Arthrobacter phage Raphaella] >gb|XEN18628.1| hypothetical protein SEA_BILLYTP_30 [Arthrobacter phage BillyTP] 99.1936 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? n /note=d. Does GeneMark coding capacity start at the start site selected above? n /note=e. Does it start with ATG? n, but it maximizes coding potential and gene length /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 1 @21074 has 24 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 1 100% CDS 21473 - 21664 /note=YP_010655752 hypothetical protein PP634_gp31 [Arthrobacter phage Richie] >ref|YP_010656120.1| hypothetical protein PP638_gp72 [Arthrobacter phage Isolde] >gb|UYL86588.1| hypothetical protein SEA_RADFAD_31 [Arthrobacter phage RadFad] >gb|WNM64518.1| hypothetical protein SEA_MIDNIGHTRAIN_31 [Arthrobacter phage MidnightRain] >gb|XEN13648.1| hypothetical protein SEA_RAPHAELLA_31 [Arthrobacter phage Raphaella] >gb|XIJ69249.1| hypothetical protein SEA_BENCHSCRAPER_31 [Arthrobacter phage BenchScraper] >gb|AYN58857.1| hypothetical protein PBI_RICHIE_31 [Arthrobacter phage Richie] 98.5714 98.5714 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 6 @21452 has 17 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y /note=Start 6 CDS 21664 - 22917 /note=Glimmer and Genemark both called it, yes, it is long enough to be a gene, and has coding capacity. It does start with ATG and does start at the site selected above. Gap of -1 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 3 @21664 has 23 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS complement (22914 - 23114) /note=Has coding capacity, was predicted by glimmer and genemark, and was not long enough to be a gene. The start codon is GTG and the start site is the one selected above. Gap of -4. /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 1 @23114 has 22 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS complement (23111 - 23878) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 19 /note=g. Does start site selected have conserved homologues in Starterator-y (Start: 10 @23878 has 21 MA`s) /note=h. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=I. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=J.Is the function assignment supported by evidence in 7 and 8? y CDS complement (23898 - 24407) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 189 CDS 24558 - 25514 /note=Glimmer and genemark predicted this, yes it is long enough to be a gene, and it has coding capacity. Starts with ATG and has a gap of 189. CDS 25525 - 25881 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 10 CDS complement (25870 - 26106) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? N /note=f. Does it have a -4 gap? 133 CDS 26240 - 26719 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 133 CDS complement (26681 - 27853) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a -4 gap? -8 CDS complement (27846 - 28031) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? -1 CDS complement (28031 - 28531) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a -4 gap? 58 CDS complement (28590 - 29171) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 418 CDS 29590 - 29757 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 418 CDS 29984 - 30196 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a -4 gap? 226 CDS 30193 - 30369 /note=Not noted on genemark, does not start with ATG, gap of -4. Probably part of adjacent gene. CDS 30366 - 30557 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? -22 CDS 30554 - 30787 /note=Not recorded on genemark, starts with GTG, -4 gap. CDS complement (31031 - 31453) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a -4 gap? -32 CDS complement (31422 - 31874) /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 361 CDS 32236 - 32463 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 361 CDS 32468 - 32692 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? 4 /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 3 @32468 has 17 MA`s), (Start: 4 @32483 has 1 MA`s) CDS 32766 - 33026 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a -4 gap? 73 /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 2 @32766 has 1 MA`s) CDS 33023 - 33259 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? -4 /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? n /note=10. Does start site selected have conserved homologues in Starterator? (3, 33023), (6, 33080), (7, 33131), (9, 33227), (10, 33248), CDS 33256 - 33534 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a -4 gap? -4 /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 16 @33256 has 23 MA`s) CDS 33531 - 33689 /note=a. Did both Glimmer and Genemark call this gene? n /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? n /note=10. Does start site selected have conserved homologues in Starterator? (Start: 9 @33531 has 15 MA`s) CDS 33686 - 34147 /note=a. Did both Glimmer and Genemark call this gene? n /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? n /note=d. Does GeneMark coding capacity start at the start site selected above? n /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 22 @33686 has 2 MA`s), CDS complement (33626 - 34114) /note=Called by Glimmer only and is in a reverse reading frame that overlaps forward genes 55 and 56. No Blast matches and very low coding potential. Unlikely to be a gene. /note= /note=a. Did both Glimmer and Genemark call this gene? n /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? n /note=d. Does GeneMark coding capacity start at the start site selected above? n /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 34144 - 34302 /note=XEN13675 hypothetical protein SEA_RAPHAELLA_58 [Arthrobacter phage Raphaella] 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 36 @34144 has 10 MA`s) CDS 34302 - 34445 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? n /note=10. Does start site selected have conserved homologues in Starterator? (Start: 12 @34302 has 38 MA`s) CDS 34442 - 34567 /note=YP_010655876 hypothetical protein 100 100 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 16 @34442 has 17 MA`s) CDS 34564 - 34710 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 16 @34564 has 24 MA`s) CDS 34707 - 34901 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 22 @34707 has 17 MA`s) CDS 34898 - 35122 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 23 @34898 has 17 MA`s) CDS 35115 - 35612 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (Start: 13 @35115 has 11 MA`s) CDS 35729 - 35995 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y /note=10. Does start site selected have conserved homologues in Starterator? (1, 35471), (2, 35540), (3, 35729), (6, 35750), (7, 35780), (9, 35819), CDS 35986 - 36150 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? n /note=10. Does start site selected have conserved homologues in Starterator? (Start: 25 @35995 has 17 MA`s) CDS 36153 - 36827 /note=1. Did both Glimmer and Genemark call this gene? y (At the top of the page, if the is a Glimmer Start and a GeneMark Start, then the answer is Y) /note=2. Is it long enough (120nt) to be a gene? y (Under Gene Candidates, look in the Length column) /note=3. Does it have GeneMark coding capacity? y (Compare to the Host-trained GeneMark at top of page) /note=4. Does start site selected include all GeneMark coding capacity? y (Same as 3) /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 4 @5974 has 111 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 36827 - 37375 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Start: 24 @36827 has 16 MA`s) /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 37372 - 38583 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 4 @2775 has 10 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y (Strong evidence has E-value of 1e-8 or less) /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 38583 - 39104 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 4 @229790 has 209 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y (Strong evidence has E-value of 1e-8 or less) /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 39124 - 39525 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 16 @4557 has 7 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 39534 - 40001 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y (Compare to the Host-trained GeneMark at top of page /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 6 @4195 has 8 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y (Strong evidence has E-value of 1e-8 or less) /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 40107 - 40418 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 12 @233679 has 20 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 40439 - 40651 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 14 @196725 has 18 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 40648 - 41133 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 26 @221261 has 15 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 41130 - 43658 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 44 @233471 has 35 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 43655 - 44044 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 97 @233226 has 273 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 44041 - 45123 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 25 @160319 has 39 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 45120 - 45398 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? y /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 3 @6410 has 8 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? y /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 45395 - 45811 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 4 @7056 has 12 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? y /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 45829 - 47274 /note=1. Did both Glimmer and Genemark call this gene? y /note=2. Is it long enough (120nt) to be a gene? y /note=3. Does it have GeneMark coding capacity? y /note=4. Does start site selected include all GeneMark coding capacity? n /note=5. Does start site selected have conserved homologues in Starterator? Yes, Start: 84 @774 has 83 MA`s /note=6. Does it have a gap of -1, -4 (ATGA), or a small positive? n /note=7. Does the gene have strong evidence checked in PhagesDB, NCBI, CCD, and/or HHPred? n /note=8. Does the gene have synteny (flanking genes are similar to other phages) in Phamerator? y /note=9. Is the function assignment supported by evidence in 7 and 8? y CDS 47292 - 47726 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -4, -1, or small positive? Y CDS 47960 - 48331 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? N, TTG /note=f. Does it have a gap of -4, -1, or small positive? N CDS 48328 - 48726 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -4, -1, or small positive? Y CDS 48726 - 49157 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 49154 - 49555 /note=XIJ70580 MazG-like nucleotide pyrophosphohydrolase [Arthrobacter phage Phrank15] 96.9925 99.2481 100 132 /note= /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 49555 - 49980 /note=rusa-like resolvase 221057 AY 19 31 /note= /note= WNM64579 RusA-like resolvase [Arthrobacter phage MidnightRain] 92.1986 96.4539 100 136 /note= /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 49977 - 50498 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 50495 - 50716 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 50713 - 50940 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 50937 - 51179 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 51176 - 51925 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? y CDS 52017 - 52622 /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? n /note=f. Does it have a gap of -1, -4, or a small positive? n CDS 52958 - 53113 /note=Genemark did not call this gene, it should be deleted. CDS 53176 - 53625 /note=XIJ69311 No 2024-10-28 HNH endonuclease HNH endonuclease [Arthrobacter phage BenchScraper] 87.1345 87.1345 100 /note= /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? y /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n CDS 53641 - 53802 /note=Both Glimmer and Genemark called this gene. /note= /note=a. Did both Glimmer and Genemark call this gene? y /note=b. Is it long enough (200nt) to be a gene? n /note=c. Does it have GeneMark coding capacity? y /note=d. Does GeneMark coding capacity start at the start site selected above? y /note=e. Does it start with ATG? y /note=f. Does it have a gap of -1, -4, or a small positive? n CDS 53940 - 54125 /note=Genemark did not call this gene, it should be deleted. CDS 54213 - 54983 /note=XIJ70745 No 2024-10-28 HNH endonuclease HNH endonuclease [Arthrobacter phage Anekin] 99.6094 99.6094 /note= /note=Both Glimmer and Genemark called this gene.