CDS 1 - 255
  /gene="1"
  /product="gp1"
  /function="hypothetical protein"
  /locus tag="Matsumoto_1"
    /note=Original Glimmer call @bp 1 has strength 11.21; Genemark calls start at 1
    /note=SSC: 1-255 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein ET08_1 [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 7.98016E-56 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.905, -2.9063687850157054, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein ET08_1 [Mycobacterium phage ET08] ],,YP_003347684,100.0,7.98016E-56 SIF-HHPRED:  SIF-Syn: gene 1 in Napoleon13 is also NKF.
    /note=Phagesdb, BLAST and HHPred do not support a function for this gene, Not a tmm protein.

CDS 252 - 473
  /gene="2"
  /product="gp2"
  /function="membrane protein"
  /locus tag="Matsumoto_2"
    /note=Original Glimmer call @bp 252 has strength 7.53; Genemark calls start at 252
    /note=SSC: 252-473 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein ALICE_2 [Mycobacterium phage Alice] ],,NCBI, q1:s1 100.0% 4.63819E-47 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.486, -6.094858505415773, no F: membrane protein SIF-BLAST: ,,[hypothetical protein ALICE_2 [Mycobacterium phage Alice] ],,YP_009216267,100.0,4.63819E-47 SIF-HHPRED: DUF6479 ; Family of unknown function (DUF6479),,,PF20087.2,56.1644,92.6 SIF-Syn: 
    /note=One tmb domain supported by ThMM and SOSUI.

CDS 477 - 1343
  /gene="3"
  /product="gp3"
  /function="nucleotidyl transferase"
  /locus tag="Matsumoto_3"
    /note=Original Glimmer call @bp 477 has strength 13.68; Genemark calls start at 477
    /note=SSC: 477-1343 CP: yes SCS: both ST: SS BLAST-Start: [nucleotidyl transferase [Mycobacterium phage ChaylaJr]],,NCBI, q1:s1 100.0% 0.0 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -3.711231203526307, yes F: nucleotidyl transferase SIF-BLAST: ,,[nucleotidyl transferase [Mycobacterium phage ChaylaJr]],,QNJ58642,100.0,0.0 SIF-HHPRED:  SIF-Syn: Easyjones_3
    /note=Called 60 times in phagesdb for other C1 phages. Supported by Phagesdb BLAST, NCBI BLAST and CDD.

CDS 1343 - 1594
  /gene="4"
  /product="gp4"
  /function="hypothetical protein"
  /locus tag="Matsumoto_4"
    /note=Original Glimmer call @bp 1373 has strength 9.7; Genemark calls start at 1373
    /note=SSC: 1343-1594 CP: yes SCS: both-cs ST: SS BLAST-Start: [gp4 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.86575E-53 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.798, -5.151368342989444, no F: hypothetical protein SIF-BLAST: ,,[gp4 [Mycobacterium phage Bxz1] ],,NP_818080,100.0,2.86575E-53 SIF-HHPRED:  SIF-Syn: not informative of function.
    /note=Glimmer and Genemark call 1373 as the start but starterator supports 1343 as the most manually annotated start. It also has the shortest overlap/gap. No function called by BLAST, HHPred hits have a low probability and a high E value.

CDS 1587 - 1877
  /gene="5"
  /product="gp5"
  /function="hypothetical protein"
  /locus tag="Matsumoto_5"
    /note=Original Glimmer call @bp 1587 has strength 13.34; Genemark calls start at 1587
    /note=SSC: 1587-1877 CP: yes SCS: both ST: SS BLAST-Start: [gp5 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 6.97635E-64 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -3.095100142625534, yes F: hypothetical protein SIF-BLAST: ,,[gp5 [Mycobacterium phage Rizal] ],,YP_002224703,100.0,6.97635E-64 SIF-HHPRED:  SIF-Syn: Not informative for function.
    /note=HHPred doesn`t provide a strong support for a function.

CDS 1933 - 2019
  /gene="6"
  /product="gp6"
  /function="hypothetical protein"
  /locus tag="Matsumoto_6"
    /note=
    /note=SSC: 1933-2019 CP: yes SCS: neither ST: NA BLAST-Start: [gp6 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 1.64483E-10 GAP: 55 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.496, -6.37302561812025, no F: hypothetical protein SIF-BLAST: ,,[gp6 [Mycobacterium phage Rizal] ],,YP_002224704,100.0,1.64483E-10 SIF-HHPRED:  SIF-Syn: Easyjones_6 is also NKF
    /note=No evidence supporting a function call. Not a mb protein.

CDS 2031 - 2147
  /gene="7"
  /product="gp7"
  /function="membrane protein"
  /locus tag="Matsumoto_7"
    /note=Original Glimmer call @bp 2031 has strength 6.54; Genemark calls start at 2031
    /note=SSC: 2031-2147 CP: yes SCS: both ST: SS BLAST-Start: [gp7 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 1.90023E-18 GAP: 11 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.076, -4.585118207934747, no F: membrane protein SIF-BLAST: ,,[gp7 [Mycobacterium phage Rizal] ],,YP_002224705,100.0,1.90023E-18 SIF-HHPRED:  SIF-Syn: 
    /note=Supported by ThMM and SOSUI.

CDS 2144 - 2443
  /gene="8"
  /product="gp8"
  /function="hypothetical protein"
  /locus tag="Matsumoto_8"
    /note=Original Glimmer call @bp 2144 has strength 7.83; Genemark calls start at 2144
    /note=SSC: 2144-2443 CP: yes SCS: both ST: SS BLAST-Start: [gp8 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 5.03643E-66 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.338, -4.307065658309795, yes F: hypothetical protein SIF-BLAST: ,,[gp8 [Mycobacterium phage Cali] ],,YP_002224485,100.0,5.03643E-66 SIF-HHPRED:  SIF-Syn: not informative.
    /note=No supporting evidence for a function. Not a membrane protein.

CDS 2440 - 2646
  /gene="9"
  /product="gp9"
  /function="membrane protein"
  /locus tag="Matsumoto_9"
    /note=Original Glimmer call @bp 2440 has strength 16.42; Genemark calls start at 2440
    /note=SSC: 2440-2646 CP: yes SCS: both ST: SS BLAST-Start: [gp12 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.87773E-37 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.562, -3.5660483139923818, yes F: membrane protein SIF-BLAST: ,,[gp12 [Mycobacterium phage Bxz1] ],,NP_818088,100.0,1.87773E-37 SIF-HHPRED:  SIF-Syn: not informative
    /note=According to TmHmm It has two transmembrane domains. Other sources of evidence for a function are not informative

CDS 2730 - 3413
  /gene="10"
  /product="gp10"
  /function="hypothetical protein"
  /locus tag="Matsumoto_10"
    /note=Original Glimmer call @bp 2730 has strength 11.73; Genemark calls start at 2730
    /note=SSC: 2730-3413 CP: yes SCS: both ST: SS BLAST-Start: [gp10 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 6.86702E-164 GAP: 83 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.905, -3.2925703904164987, yes F: hypothetical protein SIF-BLAST: ,,[gp10 [Mycobacterium phage Rizal] ],,YP_002224708,100.0,6.86702E-164 SIF-HHPRED:  SIF-Syn: Not informative
    /note=No evidence supporting a function.

CDS 3451 - 3705
  /gene="11"
  /product="gp11"
  /function="hypothetical protein"
  /locus tag="Matsumoto_11"
    /note=Original Glimmer call @bp 3451 has strength 11.31; Genemark calls start at 3451
    /note=SSC: 3451-3705 CP: no SCS: both ST: SS BLAST-Start: [gp11 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 1.28457E-54 GAP: 37 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.562, -3.5660483139923818, no F: hypothetical protein SIF-BLAST: ,,[gp11 [Mycobacterium phage Rizal] ],,YP_002224709,98.8095,1.28457E-54 SIF-HHPRED:  SIF-Syn: not informative
    /note=no supporting evidence for a function.

CDS 3705 - 3917
  /gene="12"
  /product="gp12"
  /function="hypothetical protein"
  /locus tag="Matsumoto_12"
    /note=Original Glimmer call @bp 3705 has strength 6.64; Genemark calls start at 3705
    /note=SSC: 3705-3917 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp013 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 4.19446E-44 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.15, -4.490107201936413, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp013 [Mycobacterium phage ArcherS7] ],,YP_008061271,100.0,4.19446E-44 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call.

CDS 3970 - 4335
  /gene="13"
  /product="gp13"
  /function="hypothetical protein"
  /locus tag="Matsumoto_13"
    /note=Original Glimmer call @bp 3970 has strength 2.7; Genemark calls start at 3970
    /note=SSC: 3970-4335 CP: yes SCS: both ST: SS BLAST-Start: [gp13 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 1.74745E-79 GAP: 52 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.009, -4.997292723641609, no F: hypothetical protein SIF-BLAST: ,,[gp13 [Mycobacterium phage Rizal] ],,YP_002224711,100.0,1.74745E-79 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call.

CDS 4328 - 4513
  /gene="14"
  /product="gp14"
  /function="hypothetical protein"
  /locus tag="Matsumoto_14"
    /note=Genemark calls start at 4328
    /note=SSC: 4328-4513 CP: yes SCS: genemark ST: SS BLAST-Start: [gp14 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 4.62818E-34 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.962, -3.1725816037952645, no F: hypothetical protein SIF-BLAST: ,,[gp14 [Mycobacterium phage Rizal] ],,YP_002224712,100.0,4.62818E-34 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call.

CDS 4650 - 4982
  /gene="15"
  /product="gp15"
  /function="membrane protein"
  /locus tag="Matsumoto_15"
    /note=Original Glimmer call @bp 4650 has strength 8.3; Genemark calls start at 4650
    /note=SSC: 4650-4982 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_18 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.28143E-71 GAP: 136 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -2.8454123590742793, yes F: membrane protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_18 [Mycobacterium phage ScottMcG] ],,YP_002224051,100.0,1.28143E-71 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=Phagesdb, BLAST and HHPred do not predict a known function. TmHmm predicts only one transmembrane domain supported by SOSUI.

CDS 4979 - 5218
  /gene="16"
  /product="gp16"
  /function="hypothetical protein"
  /locus tag="Matsumoto_16"
    /note=Original Glimmer call @bp 4979 has strength 10.92; Genemark calls start at 4985
    /note=SSC: 4979-5218 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_INIGOMONTOYA_18 [Mycobacterium phage InigoMontoya] ],,NCBI, q1:s1 100.0% 4.97866E-51 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -2.8454123590742793, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_INIGOMONTOYA_18 [Mycobacterium phage InigoMontoya] ],,AXY85533,100.0,4.97866E-51 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call.

CDS 5215 - 5748
  /gene="17"
  /product="gp17"
  /function="histidine triad nucleotide binding protein"
  /locus tag="Matsumoto_17"
    /note=Original Glimmer call @bp 5215 has strength 13.91; Genemark calls start at 5215
    /note=SSC: 5215-5748 CP: yes SCS: both ST: SS BLAST-Start: [gp17 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 2.10041E-128 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.627458653341447, yes F: histidine triad nucleotide binding protein SIF-BLAST: ,,[gp17 [Mycobacterium phage Rizal] ],,YP_002224715,100.0,2.10041E-128 SIF-HHPRED: AP-4-A phosphorylase; Mycobacterium, diadenosine polyphosphate, phosphorylase, HIT motif, TRANSFERASE; HET: PG4, PO4; 1.894A {Mycobacterium tuberculosis},,,3ANO_A,83.0508,99.8 SIF-Syn: Supported by EasyJones_13
    /note=Function call supported by all sources of evidence.

CDS 5748 - 5933
  /gene="18"
  /product="gp18"
  /function="hypothetical protein"
  /locus tag="Matsumoto_18"
    /note=Original Glimmer call @bp 5748 has strength 15.26; Genemark calls start at 5748
    /note=SSC: 5748-5933 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein LINSTU_21 [Mycobacterium phage LinStu] ],,NCBI, q1:s7 100.0% 4.35909E-34 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.523003374675015, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein LINSTU_21 [Mycobacterium phage LinStu] ],,YP_009014615,91.0448,4.35909E-34 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence for a function call.

CDS 6027 - 6311
  /gene="19"
  /product="gp19"
  /function="hypothetical protein"
  /locus tag="Matsumoto_19"
    /note=Original Glimmer call @bp 6033 has strength 8.13; Genemark calls start at 6027
    /note=SSC: 6027-6311 CP: yes SCS: both-gm ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_22 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 6.99849E-63 GAP: 93 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.43, -6.210473446429151, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_22 [Mycobacterium phage ScottMcG] ],,YP_002224055,100.0,6.99849E-63 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence for a function call.

CDS 6308 - 6535
  /gene="20"
  /product="gp20"
  /function="membrane protein"
  /locus tag="Matsumoto_20"
    /note=Original Glimmer call @bp 6308 has strength 15.7; Genemark calls start at 6308
    /note=SSC: 6308-6535 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein WALLY_20 [Mycobacterium phage Wally] ],,NCBI, q1:s1 100.0% 5.39359E-42 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.151, -4.34663776219455, yes F: membrane protein SIF-BLAST: ,,[hypothetical protein WALLY_20 [Mycobacterium phage Wally] ],,AER25391,100.0,5.39359E-42 SIF-HHPRED:  SIF-Syn: 
    /note=No evidence supporting a function call. TmHmm and SOSUI predict at least one transmembrane domain.

CDS 6564 - 6704
  /gene="21"
  /product="gp21"
  /function="hypothetical protein"
  /locus tag="Matsumoto_21"
    /note=Original Glimmer call @bp 6564 has strength 7.9; Genemark calls start at 6564
    /note=SSC: 6564-6704 CP: yes SCS: both ST: SS BLAST-Start: [gp24 [Mycobacterium phage Bxz1] ],,NCBI, q1:s2 100.0% 5.58999E-25 GAP: 28 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.186, -4.4157344874810125, yes F: hypothetical protein SIF-BLAST: ,,[gp24 [Mycobacterium phage Bxz1] ],,NP_818100,97.8723,5.58999E-25 SIF-HHPRED:  SIF-Syn: not informative.
    /note=No evidence supporting a function call. Not a mb protein.

CDS 6706 - 6981
  /gene="22"
  /product="gp22"
  /function="hypothetical protein"
  /locus tag="Matsumoto_22"
    /note=Original Glimmer call @bp 6706 has strength 12.59; Genemark calls start at 6706
    /note=SSC: 6706-6981 CP: yes SCS: both ST: SS BLAST-Start: [gp25 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.54922E-62 GAP: 1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.657, -3.364992052816827, yes F: hypothetical protein SIF-BLAST: ,,[gp25 [Mycobacterium phage Bxz1] ],,NP_818101,100.0,3.54922E-62 SIF-HHPRED:  SIF-Syn: not informative
    /note=No evidence supporting a function call. Not a mb protein.

CDS 7156 - 7497
  /gene="23"
  /product="gp23"
  /function="membrane protein"
  /locus tag="Matsumoto_23"
    /note=Original Glimmer call @bp 7219 has strength 4.84; Genemark calls start at 7219
    /note=SSC: 7156-7497 CP: no SCS: both-cs ST: SS BLAST-Start: [gp26 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.85656E-74 GAP: 174 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.497, -7.025616190958474, no F: membrane protein SIF-BLAST: ,,[gp26 [Mycobacterium phage Bxz1] ],,NP_818102,100.0,1.85656E-74 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=TmHmm and SOSUI predict one transmembrane protein. No other evidence for a function call.

CDS 7567 - 8079
  /gene="24"
  /product="gp24"
  /function="HNH endonuclease"
  /locus tag="Matsumoto_24"
    /note=Original Glimmer call @bp 7696 has strength 3.28
    /note=SSC: 7567-8079 CP: yes SCS: glimmer-cs ST: SS BLAST-Start: [HNH endonuclease [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 1.27068E-120 GAP: 69 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.455, -4.616531345323367, no F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Mycobacterium phage ArcherS7] ],,YP_008061283,100.0,1.27068E-120 SIF-HHPRED: ICEA ; ICEA Protein,,,PF05315.14,37.0588,98.9 SIF-Syn: Ading_25 also supports function call.
    /note=Functional call supported by Phagesdb and NCBI BLAST, and CDD.

CDS 8115 - 8471
  /gene="25"
  /product="gp25"
  /function="hypothetical protein"
  /locus tag="Matsumoto_25"
    /note=Original Glimmer call @bp 8115 has strength 7.39; Genemark calls start at 8115
    /note=SSC: 8115-8471 CP: yes SCS: both ST: SS BLAST-Start: [gp27 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.57067E-79 GAP: 35 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.962, -3.2975203404035645, yes F: hypothetical protein SIF-BLAST: ,,[gp27 [Mycobacterium phage Bxz1] ],,NP_818103,100.0,4.57067E-79 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call.

CDS 8482 - 8589
  /gene="26"
  /product="gp26"
  /function="hypothetical protein"
  /locus tag="Matsumoto_26"
    /note=Genemark calls start at 8482
    /note=SSC: 8482-8589 CP: yes SCS: genemark ST: NA BLAST-Start: [hypothetical protein SCOTTMCG_27 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.63124E-16 GAP: 10 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.597, -5.509286325636915, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_27 [Mycobacterium phage ScottMcG] ],,YP_002224060,100.0,1.63124E-16 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call. Not a mb protein.

CDS 8589 - 8789
  /gene="27"
  /product="gp27"
  /function="hypothetical protein"
  /locus tag="Matsumoto_27"
    /note=Original Glimmer call @bp 8589 has strength 15.81; Genemark calls start at 8589
    /note=SSC: 8589-8789 CP: yes SCS: both ST: SS BLAST-Start: [gp28 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.24496E-39 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.905, -3.6727816321281046, yes F: hypothetical protein SIF-BLAST: ,,[gp28 [Mycobacterium phage Bxz1] ],,NP_818104,100.0,1.24496E-39 SIF-HHPRED:  SIF-Syn: Not informative.
    /note=No evidence supporting a function call. Not a mb protein.

CDS 8822 - 9766
  /gene="28"
  /product="gp28"
  /function="membrane protein, Band-7 -like"
  /locus tag="Matsumoto_28"
    /note=Original Glimmer call @bp 8828 has strength 18.4; Genemark calls start at 8828
    /note=SSC: 8822-9766 CP: yes SCS: both-cs ST: SS BLAST-Start: [lipoprotein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 32 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.12, -2.66590822473965, yes F: membrane protein, Band-7 -like SIF-BLAST: ,,[lipoprotein [Mycobacterium phage Bxz1] ],,NP_818105,100.0,0.0 SIF-HHPRED: Protein HflK; membrane microdomain organization, MEMBRANE PROTEIN; 3.27A {Escherichia coli},,,7VHP_O,79.6178,100.0 SIF-Syn: Audrick_31 same location and function. Similar up and downstream genes.
    /note=Function call supported by all sources of evidence.

CDS 9770 - 10132
  /gene="29"
  /product="gp29"
  /function="hypothetical protein"
  /locus tag="Matsumoto_29"
    /note=Original Glimmer call @bp 9770 has strength 9.83; Genemark calls start at 9770
    /note=SSC: 9770-10132 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein DRAZDYS_30 [Mycobacterium phage Drazdys] ],,NCBI, q1:s1 100.0% 4.50003E-83 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.091, -4.473102278738214, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein DRAZDYS_30 [Mycobacterium phage Drazdys] ],,AEK06841,100.0,4.50003E-83 SIF-HHPRED:  SIF-Syn: syntenic to Gene 29 in ShiaLabeouf- not informative for function
    /note=NKF supported by Blast, PhagesDB, and HHpred, not a TMM protein.

CDS 10129 - 10260
  /gene="30"
  /product="gp30"
  /function="hypothetical protein"
  /locus tag="Matsumoto_30"
    /note=Original Glimmer call @bp 10129 has strength 14.91; Genemark calls start at 10129
    /note=SSC: 10129-10260 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ESSENCE_30 [Mycobacterium phage Essence]],,NCBI, q1:s1 100.0% 5.66281E-23 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -3.3503726477288405, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_ESSENCE_30 [Mycobacterium phage Essence]],,QAY13748,100.0,5.66281E-23 SIF-HHPRED:  SIF-Syn: syntenic to Gene 30 in Napoleon13- not informative for function
    /note=NKF supported by Blast. PhagesDB not enough evidence to support a function, and HHpred e value too high to support a function, not a TMM protein. more evidence needed for function call

CDS 10334 - 10684
  /gene="31"
  /product="gp31"
  /function="hypothetical protein"
  /locus tag="Matsumoto_31"
    /note=Original Glimmer call @bp 10334 has strength 15.47; Genemark calls start at 10334
    /note=SSC: 10334-10684 CP: yes SCS: both ST: SS BLAST-Start: [gp32 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 2.34601E-80 GAP: 73 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -4.410201207862326, yes F: hypothetical protein SIF-BLAST: ,,[gp32 [Mycobacterium phage Cali] ],,YP_002224509,100.0,2.34601E-80 SIF-HHPRED:  SIF-Syn: Syntenic to gene 31 of Napoleon13- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein.

CDS 10761 - 11048
  /gene="32"
  /product="gp32"
  /function="hypothetical protein"
  /locus tag="Matsumoto_32"
    /note=Original Glimmer call @bp 10761 has strength 22.53; Genemark calls start at 10761
    /note=SSC: 10761-11048 CP: yes SCS: both ST: SS BLAST-Start: [gp33 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.64271E-63 GAP: 76 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.983, -2.6013996449736907, yes F: hypothetical protein SIF-BLAST: ,,[gp33 [Mycobacterium phage Bxz1] ],,NP_818109,100.0,2.64271E-63 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 32- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 11050 - 11211
  /gene="33"
  /product="gp33"
  /function="hypothetical protein"
  /locus tag="Matsumoto_33"
    /note=Original Glimmer call @bp 11050 has strength 16.92; Genemark calls start at 11050
    /note=SSC: 11050-11211 CP: yes SCS: both ST: SS BLAST-Start: [gp34 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.15028E-31 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.049, -4.6236495748204955, yes F: hypothetical protein SIF-BLAST: ,,[gp34 [Mycobacterium phage Bxz1] ],,NP_818110,100.0,7.15028E-31 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 33- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein.

CDS 11211 - 11429
  /gene="34"
  /product="gp34"
  /function="ribbon-helix-helix DNA binding domain"
  /locus tag="Matsumoto_34"
    /note=Original Glimmer call @bp 11247 has strength 3.09; Genemark calls start at 11211
    /note=SSC: 11211-11429 CP: yes SCS: both-gm ST: SS BLAST-Start: [DNA binding protein [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 9.37221E-43 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.562, -3.5660483139923818, yes F: ribbon-helix-helix DNA binding domain SIF-BLAST: ,,[DNA binding protein [Mycobacterium phage ET08] ],,YP_003347713,100.0,9.37221E-43 SIF-HHPRED:  SIF-Syn: syntenic to shiaLebeouf  gene 35- function ribbon-helix-helix DNA binding protein
    /note=function supported by Phagesdb function frequency, NCBI blast, and syntenic genes

CDS 11429 - 11536
  /gene="35"
  /product="gp35"
  /function="hypothetical protein"
  /locus tag="Matsumoto_35"
    /note=Genemark calls start at 11429
    /note=SSC: 11429-11536 CP: yes SCS: genemark ST: SS BLAST-Start: [hypothetical protein ET08_31 [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 9.79116E-16 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.562, -3.5660483139923818, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein ET08_31 [Mycobacterium phage ET08] ],,YP_003347714,100.0,9.79116E-16 SIF-HHPRED:  SIF-Syn: syntenic to shiaLebeouf  gene 36- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 11601 - 11930
  /gene="36"
  /product="gp36"
  /function="hypothetical protein"
  /locus tag="Matsumoto_36"
    /note=Original Glimmer call @bp 11601 has strength 17.28; Genemark calls start at 11601
    /note=SSC: 11601-11930 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein GHOST_37 [Mycobacterium phage Ghost] ],,NCBI, q1:s1 100.0% 7.13996E-74 GAP: 64 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.5052746077145835, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein GHOST_37 [Mycobacterium phage Ghost] ],,AEJ94899,100.0,7.13996E-74 SIF-HHPRED:  SIF-Syn: syntenic to shiaLebeouf  gene 37- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 12003 - 12257
  /gene="37"
  /product="gp37"
  /function="hypothetical protein"
  /locus tag="Matsumoto_37"
    /note=Original Glimmer call @bp 12003 has strength 18.05; Genemark calls start at 12003
    /note=SSC: 12003-12257 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp039 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 2.61345E-52 GAP: 72 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.216, -2.1924212546750814, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp039 [Mycobacterium phage ArcherS7] ],,YP_008061297,100.0,2.61345E-52 SIF-HHPRED:  SIF-Syn: syntenic to ShiaLabeouf gene 38- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 12254 - 12424
  /gene="38"
  /product="gp38"
  /function="hypothetical protein"
  /locus tag="Matsumoto_38"
    /note=Original Glimmer call @bp 12254 has strength 17.93; Genemark calls start at 12254
    /note=SSC: 12254-12424 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_38 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.91993E-29 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.785, -5.256359229020349, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_38 [Mycobacterium phage ScottMcG] ],,YP_002224071,100.0,1.91993E-29 SIF-HHPRED:  SIF-Syn: syntenic to shiaLebeouf  gene 39- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 12438 - 12698
  /gene="39"
  /product="gp39"
  /function="hypothetical protein"
  /locus tag="Matsumoto_39"
    /note=Original Glimmer call @bp 12438 has strength 13.2; Genemark calls start at 12438
    /note=SSC: 12438-12698 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_39 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 8.10585E-55 GAP: 13 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.657, -3.3472632858563953, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_39 [Mycobacterium phage ScottMcG] ],,YP_002224072,100.0,8.10585E-55 SIF-HHPRED:  SIF-Syn: syntenic to shiaLebeouf  gene 40- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 12691 - 12978
  /gene="40"
  /product="gp40"
  /function="hypothetical protein"
  /locus tag="Matsumoto_40"
    /note=Original Glimmer call @bp 12691 has strength 11.8; Genemark calls start at 12691
    /note=SSC: 12691-12978 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp042 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 2.72349E-64 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.5052746077145835, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp042 [Mycobacterium phage ArcherS7] ],,YP_008061300,100.0,2.72349E-64 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 39- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 12968 - 13216
  /gene="41"
  /product="gp41"
  /function="hypothetical protein"
  /locus tag="Matsumoto_41"
    /note=Original Glimmer call @bp 12968 has strength 9.06; Genemark calls start at 12968
    /note=SSC: 12968-13216 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp043 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 6.83748E-53 GAP: -11 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -2.827683592113848, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp043 [Mycobacterium phage ArcherS7] ],,YP_008061301,100.0,6.83748E-53 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 40- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 13216 - 13368
  /gene="42"
  /product="gp42"
  /function="hypothetical protein"
  /locus tag="Matsumoto_42"
    /note=Original Glimmer call @bp 13183 has strength 0.83; Genemark calls start at 13216
    /note=SSC: 13216-13368 CP: yes SCS: both-gm ST: SS BLAST-Start: [gp43 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.94761E-29 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.63, -3.4219145408355454, yes F: hypothetical protein SIF-BLAST: ,,[gp43 [Mycobacterium phage Bxz1] ],,NP_818119,100.0,1.94761E-29 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 41- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 13365 - 13550
  /gene="43"
  /product="gp43"
  /function="hypothetical protein"
  /locus tag="Matsumoto_43"
    /note=Original Glimmer call @bp 13377 has strength 3.82; Genemark calls start at 13356
    /note=SSC: 13365-13550 CP: yes SCS: both-cs ST: SS BLAST-Start: [hypothetical protein M180_gp045 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 2.90708E-37 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.923, -4.966271270034708, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp045 [Mycobacterium phage ArcherS7] ],,YP_008061303,100.0,2.90708E-37 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 42- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 13640 - 13927
  /gene="44"
  /product="gp44"
  /function="hypothetical protein"
  /locus tag="Matsumoto_44"
    /note=Original Glimmer call @bp 13640 has strength 16.97; Genemark calls start at 13640
    /note=SSC: 13640-13927 CP: yes SCS: both ST: SS BLAST-Start: [gp43 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 2.2592E-61 GAP: 89 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.442961286954254, yes F: hypothetical protein SIF-BLAST: ,,[gp43 [Mycobacterium phage Cali] ],,YP_002224520,100.0,2.2592E-61 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 43- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 13924 - 14193
  /gene="45"
  /product="gp45"
  /function="hypothetical protein"
  /locus tag="Matsumoto_45"
    /note=Original Glimmer call @bp 13924 has strength 17.37; Genemark calls start at 13918
    /note=SSC: 13924-14193 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein M180_gp047 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 3.46169E-56 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.58, -4.547770211785489, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp047 [Mycobacterium phage ArcherS7] ],,YP_008061305,100.0,3.46169E-56 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 44- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 14299 - 14664
  /gene="46"
  /product="gp46"
  /function="hypothetical protein"
  /locus tag="Matsumoto_46"
    /note=Original Glimmer call @bp 14299 has strength 15.45; Genemark calls start at 14299
    /note=SSC: 14299-14664 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_46 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.13425E-84 GAP: 105 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.801, -5.080915947802713, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_46 [Mycobacterium phage ScottMcG] ],,YP_002224079,100.0,1.13425E-84 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 45- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 14701 - 14961
  /gene="47"
  /product="gp47"
  /function="hypothetical protein"
  /locus tag="Matsumoto_47"
    /note=Original Glimmer call @bp 14701 has strength 11.23; Genemark calls start at 14701
    /note=SSC: 14701-14961 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp049 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 1.01829E-55 GAP: 36 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.227, -2.1695583717155773, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp049 [Mycobacterium phage ArcherS7] ],,YP_008061307,100.0,1.01829E-55 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 46- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage makes HHpred poor support, not a TMM protein

CDS 15026 - 15265
  /gene="48"
  /product="gp48"
  /function="hypothetical protein"
  /locus tag="Matsumoto_48"
    /note=Original Glimmer call @bp 15026 has strength 17.64; Genemark calls start at 15026
    /note=SSC: 15026-15265 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_48 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 5.18223E-49 GAP: 64 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.216, -2.17469248771465, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_48 [Mycobacterium phage ScottMcG] ],,YP_002224081,100.0,5.18223E-49 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 47- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 15267 - 15485
  /gene="49"
  /product="gp49"
  /function="hypothetical protein"
  /locus tag="Matsumoto_49"
    /note=Original Glimmer call @bp 15267 has strength 15.85; Genemark calls start at 15267
    /note=SSC: 15267-15485 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp051 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 1.51459E-43 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.741, -3.459652012164126, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp051 [Mycobacterium phage ArcherS7] ],,YP_008061309,100.0,1.51459E-43 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 48- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 15485 - 15673
  /gene="50"
  /product="gp50"
  /function="hypothetical protein"
  /locus tag="Matsumoto_50"
    /note=Original Glimmer call @bp 15485 has strength 16.13; Genemark calls start at 15485
    /note=SSC: 15485-15673 CP: yes SCS: both ST: SS BLAST-Start: [gp49 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 1.43565E-36 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -2.8454123590742793, yes F: hypothetical protein SIF-BLAST: ,,[gp49 [Mycobacterium phage Cali] ],,YP_002224526,100.0,1.43565E-36 SIF-HHPRED:  SIF-Syn: syntenic to BeanWater gene 45- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 15673 - 16113
  /gene="51"
  /product="gp51"
  /function="hypothetical protein"
  /locus tag="Matsumoto_51"
    /note=Original Glimmer call @bp 15673 has strength 12.29; Genemark calls start at 15673
    /note=SSC: 15673-16113 CP: yes SCS: both ST: SS BLAST-Start: [gp53 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.64599E-104 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -2.3335289980954053, yes F: hypothetical protein SIF-BLAST: ,,[gp53 [Mycobacterium phage Bxz1] ],,NP_818129,100.0,3.64599E-104 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 50- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 16186 - 16416
  /gene="52"
  /product="gp52"
  /function="hypothetical protein"
  /locus tag="Matsumoto_52"
    /note=Original Glimmer call @bp 16186 has strength 17.43; Genemark calls start at 16186
    /note=SSC: 16186-16416 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_52 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 3.08846E-48 GAP: 72 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.983, -2.6013996449736907, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_52 [Mycobacterium phage ScottMcG] ],,YP_002224085,100.0,3.08846E-48 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 51- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 16420 - 16794
  /gene="53"
  /product="gp53"
  /function="hypothetical protein"
  /locus tag="Matsumoto_53"
    /note=Original Glimmer call @bp 16420 has strength 15.76; Genemark calls start at 16420
    /note=SSC: 16420-16794 CP: yes SCS: both ST: SS BLAST-Start: [gp55 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.96928E-85 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.794070146961553, yes F: hypothetical protein SIF-BLAST: ,,[gp55 [Mycobacterium phage Bxz1] ],,NP_818131,100.0,1.96928E-85 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 52- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 16824 - 17126
  /gene="54"
  /product="gp54"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Matsumoto_54"
    /note=Original Glimmer call @bp 16824 has strength 16.59; Genemark calls start at 16824
    /note=SSC: 16824-17126 CP: yes SCS: both ST: SS BLAST-Start: [HTH DNA binding protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.24018E-64 GAP: 29 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.442961286954254, yes F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[HTH DNA binding protein [Mycobacterium phage Bxz1] ],,NP_818132,100.0,1.24018E-64 SIF-HHPRED:  SIF-Syn: syntenic to Backyardagain gene 53- helix-turn-helix DNA binding domain
    /note=function supported by Phagesdb function frequency, NCBI blast, and syntenic genes, not a TMM protein

CDS 17126 - 17266
  /gene="55"
  /product="gp55"
  /function="hypothetical protein"
  /locus tag="Matsumoto_55"
    /note=Original Glimmer call @bp 17126 has strength 7.32; Genemark calls start at 17126
    /note=SSC: 17126-17266 CP: yes SCS: both ST: SS BLAST-Start: [HNH endonuclease [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.12511E-25 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.627, -3.4283035164720754, yes F: hypothetical protein SIF-BLAST: ,,[HNH endonuclease [Mycobacterium phage Bxz1] ],,NP_818133,100.0,2.12511E-25 SIF-HHPRED:  SIF-Syn: syntenic to Ngannou gene 51- HNH endonuclease
    /note=function supported by Phagesdb function frequency, NCBI blast, and syntenic genes, not a TMM protein.
    /note=HHPred doesnt support a function call.

CDS 17266 - 17517
  /gene="56"
  /product="gp56"
  /function="hypothetical protein"
  /locus tag="Matsumoto_56"
    /note=Original Glimmer call @bp 17266 has strength 13.34; Genemark calls start at 17266
    /note=SSC: 17266-17517 CP: yes SCS: both ST: SS BLAST-Start: [gp58 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.66256E-54 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.084, -4.839586000312467, yes F: hypothetical protein SIF-BLAST: ,,[gp58 [Mycobacterium phage Bxz1] ],,NP_818134,100.0,1.66256E-54 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 55- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 17514 - 17840
  /gene="57"
  /product="gp57"
  /function="hypothetical protein"
  /locus tag="Matsumoto_57"
    /note=Original Glimmer call @bp 17514 has strength 9.93; Genemark calls start at 17514
    /note=SSC: 17514-17840 CP: yes SCS: both ST: SS BLAST-Start: [gp59 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.84549E-72 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.492, -6.080970649622256, no F: hypothetical protein SIF-BLAST: ,,[gp59 [Mycobacterium phage Bxz1] ],,NP_818135,100.0,1.84549E-72 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 56- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 17922 - 18329
  /gene="58"
  /product="gp58"
  /function="hypothetical protein"
  /locus tag="Matsumoto_58"
    /note=Original Glimmer call @bp 17922 has strength 19.88; Genemark calls start at 17922
    /note=SSC: 17922-18329 CP: yes SCS: both ST: SS BLAST-Start: [gp60 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.08612E-92 GAP: 81 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.5052746077145835, yes F: hypothetical protein SIF-BLAST: ,,[gp60 [Mycobacterium phage Bxz1] ],,NP_818136,100.0,2.08612E-92 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 57- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 18420 - 19115
  /gene="59"
  /product="gp59"
  /function="hypothetical protein"
  /locus tag="Matsumoto_59"
    /note=Original Glimmer call @bp 18420 has strength 14.78; Genemark calls start at 18420
    /note=SSC: 18420-19115 CP: yes SCS: both ST: SS BLAST-Start: [gp61 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 8.73169E-166 GAP: 90 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.583959800616441, yes F: hypothetical protein SIF-BLAST: ,,[gp61 [Mycobacterium phage Bxz1] ],,NP_818137,100.0,8.73169E-166 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 58- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 19115 - 19426
  /gene="60"
  /product="gp60"
  /function="hypothetical protein"
  /locus tag="Matsumoto_60"
    /note=Original Glimmer call @bp 19157 has strength 15.61; Genemark calls start at 19115
    /note=SSC: 19115-19426 CP: yes SCS: both-gm ST: SS BLAST-Start: [gp62 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.88752E-68 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.923, -4.966271270034708, no F: hypothetical protein SIF-BLAST: ,,[gp62 [Mycobacterium phage Bxz1] ],,NP_818138,100.0,1.88752E-68 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 59- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 19423 - 19629
  /gene="61"
  /product="gp61"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Matsumoto_61"
    /note=Original Glimmer call @bp 19423 has strength 14.45; Genemark calls start at 19423
    /note=SSC: 19423-19629 CP: yes SCS: both ST: SS BLAST-Start: [gp63 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.44585E-41 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.523003374675015, yes F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[gp63 [Mycobacterium phage Bxz1] ],,NP_818139,100.0,5.44585E-41 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 60- helix-turn-helix DNA binding domain
    /note=function supported by Phagesdb function frequency, NCBI blast, and syntenic genes, not a TMM protein

CDS 19626 - 19934
  /gene="62"
  /product="gp62"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Matsumoto_62"
    /note=Original Glimmer call @bp 19626 has strength 12.33; Genemark calls start at 19626
    /note=SSC: 19626-19934 CP: yes SCS: both ST: SS BLAST-Start: [gp64 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.43411E-68 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.676, -5.4858509637772555, no F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[gp64 [Mycobacterium phage Bxz1] ],,NP_818140,100.0,5.43411E-68 SIF-HHPRED: PUTATIVE TRANSCRIPTIONAL REGULATOR; TRANSCRIPTION, MARR-FAMILY, WINGED HELIX MOTIF; HET: EDO, SAL; 1.95A {STREPTOMYCES COELICOLOR},,,3ZMD_C,96.0784,99.7 SIF-Syn: syntenic to Napoleon13 gene 61- helix-turn-helix DNA binding domain
    /note=function supported by Phagesdb function frequency, NCBI blast, and syntenic genes, not a TMM protein

CDS 19934 - 20269
  /gene="63"
  /product="gp63"
  /function="hypothetical protein"
  /locus tag="Matsumoto_63"
    /note=Original Glimmer call @bp 19934 has strength 11.01; Genemark calls start at 19934
    /note=SSC: 19934-20269 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein NAPPY_67 [Mycobacterium phage Nappy] ],,NCBI, q1:s1 100.0% 2.69187E-73 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.077, -5.030063891036238, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein NAPPY_67 [Mycobacterium phage Nappy] ],,YP_009016529,100.0,2.69187E-73 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 62- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 20398 - 20661
  /gene="64"
  /product="gp64"
  /function="hypothetical protein"
  /locus tag="Matsumoto_64"
    /note=
    /note=SSC: 20398-20661 CP: no SCS: neither ST: NI BLAST-Start: [hypothetical protein M181_gp070 [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 8.90024E-55 GAP: 128 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.315, -6.181859025529208, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M181_gp070 [Mycobacterium phage Gizmo] ],,YP_008060867,100.0,8.90024E-55 SIF-HHPRED:  SIF-Syn: 

CDS 20787 - 21017
  /gene="65"
  /product="gp65"
  /function="hypothetical protein"
  /locus tag="Matsumoto_65"
    /note=Original Glimmer call @bp 20787 has strength 17.82; Genemark calls start at 20787
    /note=SSC: 20787-21017 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_64 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 7.93169E-44 GAP: 125 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.292, -1.953940808934884, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_64 [Mycobacterium phage ScottMcG] ],,YP_002224097,100.0,7.93169E-44 SIF-HHPRED:  SIF-Syn: syntenic to Zeenon gene 68- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 21070 - 21585
  /gene="66"
  /product="gp66"
  /function="hypothetical protein"
  /locus tag="Matsumoto_66"
    /note=Original Glimmer call @bp 21070 has strength 6.69; Genemark calls start at 21070
    /note=SSC: 21070-21585 CP: yes SCS: both ST: SS BLAST-Start: [gp67 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.95957E-122 GAP: 52 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.611, -5.480277857796422, no F: hypothetical protein SIF-BLAST: ,,[gp67 [Mycobacterium phage Bxz1] ],,NP_818143,100.0,9.95957E-122 SIF-HHPRED:  SIF-Syn: syntenic to Zeenon gene 69- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 21557 - 21763
  /gene="67"
  /product="gp67"
  /function="hypothetical protein"
  /locus tag="Matsumoto_67"
    /note=Original Glimmer call @bp 21557 has strength 10.37; Genemark calls start at 21557
    /note=SSC: 21557-21763 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_66 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.97731E-39 GAP: -29 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.216, -2.639579286017301, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_66 [Mycobacterium phage ScottMcG] ],,YP_002224099,100.0,1.97731E-39 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 65- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support.

CDS 21873 - 23108
  /gene="68"
  /product="gp68"
  /function="hypothetical protein"
  /locus tag="Matsumoto_68"
    /note=Original Glimmer call @bp 21873 has strength 18.24; Genemark calls start at 21873
    /note=SSC: 21873-23108 CP: yes SCS: both ST: SS BLAST-Start: [gp69 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 109 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.523003374675015, yes F: hypothetical protein SIF-BLAST: ,,[gp69 [Mycobacterium phage Bxz1] ],,NP_818145,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 66- not informative for function
    /note=NKF supported by Blast, and PhagesDB. low coverage value makes HHpred poor support.

CDS 23178 - 23858
  /gene="69"
  /product="gp69"
  /function="hypothetical protein"
  /locus tag="Matsumoto_69"
    /note=Original Glimmer call @bp 23178 has strength 13.19; Genemark calls start at 23178
    /note=SSC: 23178-23858 CP: yes SCS: both ST: SS BLAST-Start: [gp70 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.00726E-166 GAP: 69 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.774, -3.392076448018144, yes F: hypothetical protein SIF-BLAST: ,,[gp70 [Mycobacterium phage Bxz1] ],,NP_818146,100.0,1.00726E-166 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 67- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 23894 - 24169
  /gene="70"
  /product="gp70"
  /function="hypothetical protein"
  /locus tag="Matsumoto_70"
    /note=Original Glimmer call @bp 23894 has strength 9.07; Genemark calls start at 23894
    /note=SSC: 23894-24169 CP: yes SCS: both ST: SS BLAST-Start: [gp71 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.52421E-57 GAP: 35 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.970161406017234, yes F: hypothetical protein SIF-BLAST: ,,[gp71 [Mycobacterium phage Bxz1] ],,NP_818147,100.0,2.52421E-57 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 68- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support,

CDS 24186 - 24758
  /gene="71"
  /product="gp71"
  /function="hypothetical protein"
  /locus tag="Matsumoto_71"
    /note=Original Glimmer call @bp 24186 has strength 8.68; Genemark calls start at 24186
    /note=SSC: 24186-24758 CP: yes SCS: both ST: SS BLAST-Start: [gp72 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.30258E-137 GAP: 16 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.578, -3.513874779476501, no F: hypothetical protein SIF-BLAST: ,,[gp72 [Mycobacterium phage Bxz1] ],,NP_818148,100.0,2.30258E-137 SIF-HHPRED:  SIF-Syn: syntenic to zeenon gene 73- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 24763 - 25125
  /gene="72"
  /product="gp72"
  /function="hypothetical protein"
  /locus tag="Matsumoto_72"
    /note=Original Glimmer call @bp 24763 has strength 11.32; Genemark calls start at 24763
    /note=SSC: 24763-25125 CP: yes SCS: both ST: SS BLAST-Start: [gp73 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.39897E-81 GAP: 4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.644, -5.490418349731808, no F: hypothetical protein SIF-BLAST: ,,[gp73 [Mycobacterium phage Bxz1] ],,NP_818149,100.0,4.39897E-81 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 69- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 25174 - 25908
  /gene="73"
  /product="gp73"
  /function="hypothetical protein"
  /locus tag="Matsumoto_73"
    /note=Original Glimmer call @bp 25174 has strength 14.4; Genemark calls start at 25174
    /note=SSC: 25174-25908 CP: yes SCS: both ST: SS BLAST-Start: [gp74 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.38618E-178 GAP: 48 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.292, -1.953940808934884, yes F: hypothetical protein SIF-BLAST: ,,[gp74 [Mycobacterium phage Bxz1] ],,NP_818150,100.0,1.38618E-178 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 70- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 25905 - 26117
  /gene="74"
  /product="gp74"
  /function="hypothetical protein"
  /locus tag="Matsumoto_74"
    /note=Genemark calls start at 25905
    /note=SSC: 25905-26117 CP: no SCS: genemark ST: SS BLAST-Start: [gp75 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.05727E-41 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.387, -4.902475914772797, no F: hypothetical protein SIF-BLAST: ,,[gp75 [Mycobacterium phage Bxz1] ],,NP_818151,100.0,1.05727E-41 SIF-HHPRED:  SIF-Syn: 
    /note=NKF supported by Blast, and PhagesDB. High E, and low coverage values makes HHpred poor support, not a TMM protein

CDS 26120 - 26284
  /gene="75"
  /product="gp75"
  /function="hypothetical protein"
  /locus tag="Matsumoto_75"
    /note=Original Glimmer call @bp 26120 has strength 8.48; Genemark calls start at 26120
    /note=SSC: 26120-26284 CP: yes SCS: both ST: SS BLAST-Start: [gp71 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 4.53616E-31 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.795, -3.3477094457633148, no F: hypothetical protein SIF-BLAST: ,,[gp71 [Mycobacterium phage Cali] ],,YP_002224548,100.0,4.53616E-31 SIF-HHPRED:  SIF-Syn: syntenic to ShiaLabeouf gene 76- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 26340 - 26666
  /gene="76"
  /product="gp76"
  /function="hypothetical protein"
  /locus tag="Matsumoto_76"
    /note=Original Glimmer call @bp 26340 has strength 13.78; Genemark calls start at 26340
    /note=SSC: 26340-26666 CP: yes SCS: both ST: SS BLAST-Start: [gp77 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.01095E-73 GAP: 55 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.129, -4.534089041695007, no F: hypothetical protein SIF-BLAST: ,,[gp77 [Mycobacterium phage Bxz1] ],,NP_818153,100.0,1.01095E-73 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 73- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 26705 - 27415
  /gene="77"
  /product="gp77"
  /function="hypothetical protein"
  /locus tag="Matsumoto_77"
    /note=Original Glimmer call @bp 26705 has strength 12.35; Genemark calls start at 26705
    /note=SSC: 26705-27415 CP: yes SCS: both ST: SS BLAST-Start: [gp78 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 6.18453E-173 GAP: 38 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.338663114094478, yes F: hypothetical protein SIF-BLAST: ,,[gp78 [Mycobacterium phage Bxz1] ],,NP_818154,100.0,6.18453E-173 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 74- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 27429 - 27638
  /gene="78"
  /product="gp78"
  /function="hypothetical protein"
  /locus tag="Matsumoto_78"
    /note=Original Glimmer call @bp 27429 has strength 1.41; Genemark calls start at 27438
    /note=SSC: 27429-27638 CP: yes SCS: both-gl ST: SS BLAST-Start: [gp79 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.74416E-43 GAP: 13 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.335, -6.139661345734753, no F: hypothetical protein SIF-BLAST: ,,[gp79 [Mycobacterium phage Bxz1] ],,NP_818155,100.0,2.74416E-43 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 75- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 27676 - 27972
  /gene="79"
  /product="gp79"
  /function="hypothetical protein"
  /locus tag="Matsumoto_79"
    /note=Original Glimmer call @bp 27676 has strength 3.44; Genemark calls start at 27676
    /note=SSC: 27676-27972 CP: yes SCS: both ST: SS BLAST-Start: [gp80 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 6.58364E-64 GAP: 37 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.303, -2.0720764396375664, yes F: hypothetical protein SIF-BLAST: ,,[gp80 [Mycobacterium phage Bxz1] ],,NP_818156,100.0,6.58364E-64 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 76- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 27972 - 28133
  /gene="80"
  /product="gp80"
  /function="hypothetical protein"
  /locus tag="Matsumoto_80"
    /note=Original Glimmer call @bp 27972 has strength 1.66; Genemark calls start at 27972
    /note=SSC: 27972-28133 CP: no SCS: both ST: SS BLAST-Start: [gp81 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 8.47286E-31 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.839, -3.812150084159046, yes F: hypothetical protein SIF-BLAST: ,,[gp81 [Mycobacterium phage Bxz1] ],,NP_818157,100.0,8.47286E-31 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 77- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, Deep TMHMM calls TM protein, and Alpha SP

CDS 28114 - 28602
  /gene="81"
  /product="gp81"
  /function="hypothetical protein"
  /locus tag="Matsumoto_81"
    /note=Original Glimmer call @bp 28114 has strength 16.18; Genemark calls start at 28114
    /note=SSC: 28114-28602 CP: yes SCS: both ST: SS BLAST-Start: [gp77 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 7.94173E-113 GAP: -20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.738, -3.76872822804853, no F: hypothetical protein SIF-BLAST: ,,[gp77 [Mycobacterium phage Cali] ],,YP_002224554,100.0,7.94173E-113 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 78- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 28605 - 30290
  /gene="82"
  /product="gp82"
  /function="hypothetical protein"
  /locus tag="Matsumoto_82"
    /note=Original Glimmer call @bp 28605 has strength 8.26; Genemark calls start at 28605
    /note=SSC: 28605-30290 CP: yes SCS: both ST: SS BLAST-Start: [gp78 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 0.0 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.925, -4.883837968736599, no F: hypothetical protein SIF-BLAST: ,,[gp78 [Mycobacterium phage Cali] ],,YP_002224555,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 79- not informative for function
    /note=function supported by Phagesdb function frequency, and NCBI blast, not a TMM protein. HHPred doesn`t support. Based on Yassified review, SMART corrected the function call to NKF.

tRNA 30380 - 30463
  /gene="83"
  /product="tRNA-Ser(gct)"
  /locus tag="MATSUMOTO_83"
    /note=tRNA-Ser(gct)

tRNA 30657 - 30731
  /gene="84"
  /product="tRNA-Leu(cag)"
  /locus tag="MATSUMOTO_84"
    /note=tRNA-Leu(cag)

tRNA 30852 - 30925
  /gene="85"
  /product="tRNA-Leu(gag)"
  /locus tag="MATSUMOTO_85"
    /note=tRNA-Leu(gag)

tRNA 30927 - 30999
  /gene="86"
  /product="tRNA-Leu(caa)"
  /locus tag="MATSUMOTO_86"
    /note=tRNA-Leu(caa)

CDS 31070 - 34780
  /gene="87"
  /product="gp87"
  /function="hypothetical protein"
  /locus tag="Matsumoto_87"
    /note=Original Glimmer call @bp 31070 has strength 10.87; Genemark calls start at 31070
    /note=SSC: 31070-34780 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_LIFESAVOR_87 [Mycobacterium phage LifeSavor] ],,NCBI, q1:s1 100.0% 0.0 GAP: 779 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -2.6814417326944517, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_LIFESAVOR_87 [Mycobacterium phage LifeSavor] ],,AVI04686,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 84- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, and low coverage values makes HHpred poor support, not a TMM protein

CDS 34885 - 35160
  /gene="88"
  /product="gp88"
  /function="hypothetical protein"
  /locus tag="Matsumoto_88"
    /note=Original Glimmer call @bp 34885 has strength 5.28; Genemark calls start at 34792
    /note=SSC: 34885-35160 CP: no SCS: both-gl ST: SS BLAST-Start: [hypothetical protein M182_gp231 [Mycobacterium phage Astraea] ],,NCBI, q1:s1 100.0% 2.61017E-60 GAP: 104 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.983, -2.9525085049809894, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M182_gp231 [Mycobacterium phage Astraea] ],,YP_008061579,100.0,2.61017E-60 SIF-HHPRED:  SIF-Syn: 
    /note=NKF supported by Blast, and PhagesDB. High E, and low coverage values makes HHpred poor support, not a TMM protein

CDS 35164 - 38592
  /gene="89"
  /product="gp89"
  /function="portal protein"
  /locus tag="Matsumoto_89"
    /note=Original Glimmer call @bp 35164 has strength 12.08; Genemark calls start at 35164
    /note=SSC: 35164-38592 CP: yes SCS: both ST: SS BLAST-Start: [portal protein [Mycobacterium phage ShiaLabeouf]],,NCBI, q1:s1 100.0% 0.0 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.716, -3.160956374632079, no F: portal protein SIF-BLAST: ,,[portal protein [Mycobacterium phage ShiaLabeouf]],,QAY10779,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 86- Portal protein
    /note=function supported by Phagesdb function frequency, synteny, and NCBI blast, not a TMM protein

CDS 38699 - 39058
  /gene="90"
  /product="gp90"
  /function="hypothetical protein"
  /locus tag="Matsumoto_90"
    /note=Genemark calls start at 38699
    /note=SSC: 38699-39058 CP: yes SCS: genemark ST: SS BLAST-Start: [gp90 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.17475E-79 GAP: 106 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.494, -3.769471247018311, yes F: hypothetical protein SIF-BLAST: ,,[gp90 [Mycobacterium phage Bxz1] ],,NP_818163,100.0,1.17475E-79 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 87- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 39130 - 39285
  /gene="91"
  /product="gp91"
  /function="hypothetical protein"
  /locus tag="Matsumoto_91"
    /note=Genemark calls start at 39130
    /note=SSC: 39130-39285 CP: yes SCS: genemark ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_89 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 8.68816E-21 GAP: 71 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.657, -3.284949965096066, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_89 [Mycobacterium phage ScottMcG] ],,YP_002224117,100.0,8.68816E-21 SIF-HHPRED: DUF6131 ; Family of unknown function (DUF6131),,,PF19626.3,98.0392,99.8 SIF-Syn: syntenic to Napoleon13 gene 88- not informative for function
    /note=NKF supported by Blast, PhagesDB, and HHpred. A manual run of Deep tmhmm and topcons shows this as a transmembrane protein, i cannot get pecaan to update and show the evidence so it can be flagged

CDS 39350 - 40057
  /gene="92"
  /product="gp92"
  /function="ThyX-like thymidylate synthase"
  /locus tag="Matsumoto_92"
    /note=Original Glimmer call @bp 39350 has strength 9.01; Genemark calls start at 39350
    /note=SSC: 39350-40057 CP: yes SCS: both ST: SS BLAST-Start: [gp91 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.56966E-176 GAP: 64 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.234, -4.254107899658224, no F: ThyX-like thymidylate synthase SIF-BLAST: ,,[gp91 [Mycobacterium phage Bxz1] ],,NP_818164,100.0,5.56966E-176 SIF-HHPRED: Thymidylate synthase ThyX; Tetramer, UMP/dUMP methylase, ThyX homolog, TRANSFERASE; HET: FAD, 5BU; 1.76A {Streptomyces cacaoi subsp. asoensis} SCOP: d.207.1.0,,,4P5A_D,98.7234,100.0 SIF-Syn: syntenic to Napoleon13 gene 89- thyx-like thymidylate synthase
    /note=function supported by Phagesdb function frequency, synteny, and NCBI blast, not a TMM protein

CDS 40078 - 40326
  /gene="93"
  /product="gp93"
  /function="hypothetical protein"
  /locus tag="Matsumoto_93"
    /note=Original Glimmer call @bp 40078 has strength 12.92; Genemark calls start at 40078
    /note=SSC: 40078-40326 CP: yes SCS: both ST: SS BLAST-Start: [gp92 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.47062E-55 GAP: 20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.424, -3.773970443115436, no F: hypothetical protein SIF-BLAST: ,,[gp92 [Mycobacterium phage Bxz1] ],,NP_818165,100.0,5.47062E-55 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 90- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 40327 - 40878
  /gene="94"
  /product="gp94"
  /function="RNA ligase"
  /locus tag="Matsumoto_94"
    /note=Original Glimmer call @bp 40327 has strength 17.42; Genemark calls start at 40327
    /note=SSC: 40327-40878 CP: yes SCS: both ST: SS BLAST-Start: [RNA ligase [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 3.98838E-132 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.292, -1.953940808934884, yes F: RNA ligase SIF-BLAST: ,,[RNA ligase [Mycobacterium phage ScottMcG] ],,YP_002224120,100.0,3.98838E-132 SIF-HHPRED: d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | CLASS: Alpha and beta proteins (a+b), FOLD: LigT-like, SUPFAM: LigT-like, FAM: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase,,,SCOP_d1jh6a_,91.8033,99.6 SIF-Syn: syntenic to Napoleon13 gene 91- RNA ligase
    /note=function supported by Phagesdb function frequency, synteny, and NCBI blast, not a TMM protein

CDS 40930 - 44763
  /gene="95"
  /product="gp95"
  /function="hypothetical protein"
  /locus tag="Matsumoto_95"
    /note=Original Glimmer call @bp 40930 has strength 10.84; Genemark calls start at 40930
    /note=SSC: 40930-44763 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SHIALABEOUF_96 [Mycobacterium phage ShiaLabeouf]],,NCBI, q1:s1 100.0% 0.0 GAP: 51 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.905, -2.8454123590742793, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_SHIALABEOUF_96 [Mycobacterium phage ShiaLabeouf]],,QAY10784,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 92- not informative for function
    /note=lysm-like peptidoglycan binding protein has some support by PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 44799 - 48911
  /gene="96"
  /product="gp96"
  /function="hypothetical protein"
  /locus tag="Matsumoto_96"
    /note=Original Glimmer call @bp 44799 has strength 10.18; Genemark calls start at 44799
    /note=SSC: 44799-48911 CP: yes SCS: both ST: SS BLAST-Start: [gp94 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 0.0 GAP: 35 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.356391881054909, no F: hypothetical protein SIF-BLAST: ,,[gp94 [Mycobacterium phage Rizal] ],,YP_002224787,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 93- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support. deep tmhmm supports transmembrane protein, topcons does not.

CDS 48942 - 49484
  /gene="97"
  /product="gp97"
  /function="hypothetical protein"
  /locus tag="Matsumoto_97"
    /note=Original Glimmer call @bp 48942 has strength 14.95; Genemark calls start at 48942
    /note=SSC: 48942-49484 CP: yes SCS: both ST: SS BLAST-Start: [gp96 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.90516E-124 GAP: 30 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -3.2535385006449706, yes F: hypothetical protein SIF-BLAST: ,,[gp96 [Mycobacterium phage Bxz1] ],,NP_818169,100.0,1.90516E-124 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 94- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 49488 - 50489
  /gene="98"
  /product="gp98"
  /function="major capsid protein"
  /locus tag="Matsumoto_98"
    /note=Original Glimmer call @bp 49488 has strength 19.31; Genemark calls start at 49488
    /note=SSC: 49488-50489 CP: yes SCS: both ST: SS BLAST-Start: [major head protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.799, -5.227163949899647, no F: major capsid protein SIF-BLAST: ,,[major head protein [Mycobacterium phage Bxz1] ],,NP_818170,100.0,0.0 SIF-HHPRED: Major capsid protein, gp9; Myophage, redox trigger, VIRUS; 4.5A {Agrobacterium phage Milano},,,8FXR_n1,88.5886,99.9 SIF-Syn: syntenic to Napoleon13 gene 95- major capsid protein
    /note=function supported by Phagesdb function frequency, hhpred, synteny, and NCBI blast, not a TMM protein

CDS 50654 - 51286
  /gene="99"
  /product="gp99"
  /function="hypothetical protein"
  /locus tag="Matsumoto_99"
    /note=Original Glimmer call @bp 50654 has strength 19.92; Genemark calls start at 50654
    /note=SSC: 50654-51286 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein PLEIONE_104 [Mycobacterium phage Pleione] ],,NCBI, q1:s1 100.0% 8.56762E-151 GAP: 164 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.38, -3.867841122493862, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein PLEIONE_104 [Mycobacterium phage Pleione] ],,YP_009017873,100.0,8.56762E-151 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 97- not informative for function
    /note=NKF supported by Blast. low coverage value makes HHpred poor support, not a TMM protein. some support for capsid decoration protein, did not make a function determination as it is so few supporting pieces of evidence.

CDS 51368 - 51907
  /gene="100"
  /product="gp100"
  /function="head fiber protein"
  /locus tag="Matsumoto_100"
    /note=Original Glimmer call @bp 51368 has strength 14.0; Genemark calls start at 51368
    /note=SSC: 51368-51907 CP: yes SCS: both ST: SS BLAST-Start: [head fiber protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.62067E-116 GAP: 81 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -2.604595770381943, yes F: head fiber protein SIF-BLAST: ,,[head fiber protein [Mycobacterium phage Bxz1] ],,NP_818173,100.0,1.62067E-116 SIF-HHPRED: Head fiber protein; supercoiled triple repeating helix-turn-helix, VIRAL PROTEIN; 1.52A {Bacillus phage phi29},,,3QC7_A,26.8156,99.2 SIF-Syn: syntenic to Napoleon13 gene 98- not informative for function
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 51977 - 52198
  /gene="101"
  /product="gp101"
  /function="hypothetical protein"
  /locus tag="Matsumoto_101"
    /note=Original Glimmer call @bp 51977 has strength 20.86; Genemark calls start at 51977
    /note=SSC: 51977-52198 CP: yes SCS: both ST: SS BLAST-Start: [gp101 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.819E-45 GAP: 69 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.442961286954254, yes F: hypothetical protein SIF-BLAST: ,,[gp101 [Mycobacterium phage Bxz1] ],,NP_818174,100.0,9.819E-45 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 99- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 52214 - 52378
  /gene="102"
  /product="gp102"
  /function="hypothetical protein"
  /locus tag="Matsumoto_102"
    /note=Original Glimmer call @bp 52214 has strength 16.81; Genemark calls start at 52214
    /note=SSC: 52214-52378 CP: yes SCS: both ST: SS BLAST-Start: [gp102 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.68397E-29 GAP: 15 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -3.16089827114923, yes F: hypothetical protein SIF-BLAST: ,,[gp102 [Mycobacterium phage Bxz1] ],,NP_818175,100.0,9.68397E-29 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 100- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 52422 - 54308
  /gene="103"
  /product="gp103"
  /function="hypothetical protein"
  /locus tag="Matsumoto_103"
    /note=Original Glimmer call @bp 52422 has strength 9.82; Genemark calls start at 52422
    /note=SSC: 52422-54308 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein PLEIONE_108 [Mycobacterium phage Pleione] ],,NCBI, q1:s1 100.0% 0.0 GAP: 43 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.149, -2.905625766045924, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein PLEIONE_108 [Mycobacterium phage Pleione] ],,YP_009017877,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 101- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support,

CDS 54301 - 55602
  /gene="104"
  /product="gp104"
  /function="hypothetical protein"
  /locus tag="Matsumoto_104"
    /note=Original Glimmer call @bp 54301 has strength 11.17; Genemark calls start at 54301
    /note=SSC: 54301-55602 CP: yes SCS: both ST: SS BLAST-Start: [gp102 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 0.0 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.717, -3.221100372932034, yes F: hypothetical protein SIF-BLAST: ,,[gp102 [Mycobacterium phage Cali] ],,YP_002224575,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 102- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 55602 - 55814
  /gene="105"
  /product="gp105"
  /function="hypothetical protein"
  /locus tag="Matsumoto_105"
    /note=Original Glimmer call @bp 55602 has strength 15.36; Genemark calls start at 55602
    /note=SSC: 55602-55814 CP: yes SCS: both ST: SS BLAST-Start: [gp105 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.9586E-41 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -2.9525085049809894, yes F: hypothetical protein SIF-BLAST: ,,[gp105 [Mycobacterium phage Bxz1] ],,NP_818178,100.0,1.9586E-41 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 103- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 55817 - 56188
  /gene="106"
  /product="gp106"
  /function="hypothetical protein"
  /locus tag="Matsumoto_106"
    /note=Original Glimmer call @bp 55817 has strength 13.96; Genemark calls start at 55817
    /note=SSC: 55817-56188 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 1.35881E-83 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.578, -3.5316035464369326, yes F: hypothetical protein SIF-BLAST: ,,[membrane protein [Mycobacterium phage ET08] ],,YP_003347776,100.0,1.35881E-83 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 104- not informative for function
    /note=NCBI Blast supports both membrane protein and nkf, PhagesDB supports nkf, Deep TMHMM supports Alpha TM

CDS 56188 - 56418
  /gene="107"
  /product="gp107"
  /function="hypothetical protein"
  /locus tag="Matsumoto_107"
    /note=Original Glimmer call @bp 56188 has strength 12.61; Genemark calls start at 56188
    /note=SSC: 56188-56418 CP: yes SCS: both ST: SS BLAST-Start: [gp107 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 6.5399E-46 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.583959800616441, yes F: hypothetical protein SIF-BLAST: ,,[gp107 [Mycobacterium phage Bxz1] ],,NP_818180,100.0,6.5399E-46 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 105- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 56421 - 56642
  /gene="108"
  /product="gp108"
  /function="hypothetical protein"
  /locus tag="Matsumoto_108"
    /note=Original Glimmer call @bp 56421 has strength 12.48; Genemark calls start at 56421
    /note=SSC: 56421-56642 CP: yes SCS: both ST: SS BLAST-Start: [gp108 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.69734E-44 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.055, -5.200500400297053, yes F: hypothetical protein SIF-BLAST: ,,[gp108 [Mycobacterium phage Bxz1] ],,NP_818181,100.0,2.69734E-44 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 106- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 56672 - 56872
  /gene="109"
  /product="gp109"
  /function="hypothetical protein"
  /locus tag="Matsumoto_109"
    /note=
    /note=SSC: 56672-56872 CP: no SCS: neither ST: NI BLAST-Start: [hypothetical protein KHO60_gp208 [Mycobacterium phage CharlieB] ],,NCBI, q1:s1 100.0% 3.98348E-39 GAP: 29 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.097, -5.368077452953389, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein KHO60_gp208 [Mycobacterium phage CharlieB] ],,YP_010057512,100.0,3.98348E-39 SIF-HHPRED:  SIF-Syn: similar gene in Yassified 108 but not in the same pham. Yassified 108 doesnt have a known function.
    /note=None of the sources of evidence support calling a function for this gene.

CDS 56906 - 57172
  /gene="110"
  /product="gp110"
  /function="hypothetical protein"
  /locus tag="Matsumoto_110"
    /note=Original Glimmer call @bp 56921 has strength 10.81; Genemark calls start at 56921
    /note=SSC: 56906-57172 CP: yes SCS: both-cs ST: SS BLAST-Start: [gp111 [Mycobacterium phage Spud] ],,NCBI, q1:s1 100.0% 2.09512E-56 GAP: 33 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.216, -3.2136105537450197, yes F: hypothetical protein SIF-BLAST: ,,[gp111 [Mycobacterium phage Spud] ],,YP_002224360,100.0,2.09512E-56 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 108- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 57159 - 57380
  /gene="111"
  /product="gp111"
  /function="hypothetical protein"
  /locus tag="Matsumoto_111"
    /note=Original Glimmer call @bp 57261 has strength 16.65; Genemark calls start at 57261
    /note=SSC: 57159-57380 CP: yes SCS: both-cs ST: SS BLAST-Start: [gp108 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 3.05117E-47 GAP: -14 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 0.978, -6.950384892280357, no F: hypothetical protein SIF-BLAST: ,,[gp108 [Mycobacterium phage Cali] ],,YP_002224581,100.0,3.05117E-47 SIF-HHPRED:  SIF-Syn: syntenic to Zeenon gene 114- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 57442 - 57936
  /gene="112"
  /product="gp112"
  /function="hypothetical protein"
  /locus tag="Matsumoto_112"
    /note=Original Glimmer call @bp 57442 has strength 14.63; Genemark calls start at 57442
    /note=SSC: 57442-57936 CP: yes SCS: both ST: SS BLAST-Start: [gp111 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.57913E-116 GAP: 61 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -3.3503726477288405, yes F: hypothetical protein SIF-BLAST: ,,[gp111 [Mycobacterium phage Bxz1] ],,NP_818184,100.0,3.57913E-116 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 110- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 57954 - 58859
  /gene="113"
  /product="gp113"
  /function="hypothetical protein"
  /locus tag="Matsumoto_113"
    /note=Original Glimmer call @bp 57954 has strength 16.51; Genemark calls start at 57954
    /note=SSC: 57954-58859 CP: yes SCS: both ST: SS BLAST-Start: [head decoration [Mycobacterium phage Lukilu] ],,NCBI, q1:s1 100.0% 0.0 GAP: 17 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.63, -4.24928381388937, yes F: hypothetical protein SIF-BLAST: ,,[head decoration [Mycobacterium phage Lukilu] ],,YP_009597704,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 111- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein. NCBI blast shows some support for head decoration protein, not enough for function call

CDS 58888 - 59706
  /gene="114"
  /product="gp114"
  /function="hypothetical protein"
  /locus tag="Matsumoto_114"
    /note=Original Glimmer call @bp 58888 has strength 13.55; Genemark calls start at 58888
    /note=SSC: 58888-59706 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M180_gp209 [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 0.0 GAP: 28 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.151, -4.408951082954879, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M180_gp209 [Mycobacterium phage ArcherS7] ],,YP_008061371,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 112- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 59706 - 60314
  /gene="115"
  /product="gp115"
  /function="hypothetical protein"
  /locus tag="Matsumoto_115"
    /note=Original Glimmer call @bp 59706 has strength 9.79; Genemark calls start at 59706
    /note=SSC: 59706-60314 CP: yes SCS: both ST: SS BLAST-Start: [gp114 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.05645E-143 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.227, -2.1695583717155773, yes F: hypothetical protein SIF-BLAST: ,,[gp114 [Mycobacterium phage Bxz1] ],,NP_818187,100.0,1.05645E-143 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 113- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 60385 - 61011
  /gene="116"
  /product="gp116"
  /function="hypothetical protein"
  /locus tag="Matsumoto_116"
    /note=Original Glimmer call @bp 60385 has strength 12.21; Genemark calls start at 60385
    /note=SSC: 60385-61011 CP: yes SCS: both ST: SS BLAST-Start: [gp113 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 1.08626E-152 GAP: 70 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.523003374675015, yes F: hypothetical protein SIF-BLAST: ,,[gp113 [Mycobacterium phage Cali] ],,YP_002224586,100.0,1.08626E-152 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 114- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 61030 - 61320
  /gene="117"
  /product="gp117"
  /function="hypothetical protein"
  /locus tag="Matsumoto_117"
    /note=Original Glimmer call @bp 61030 has strength 11.23; Genemark calls start at 61030
    /note=SSC: 61030-61320 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M181_gp210 [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 2.34331E-64 GAP: 18 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.905, -3.6727816321281046, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M181_gp210 [Mycobacterium phage Gizmo] ],,YP_008060917,100.0,2.34331E-64 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 115- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 61407 - 63017
  /gene="118"
  /product="gp118"
  /function="hypothetical protein"
  /locus tag="Matsumoto_118"
    /note=Original Glimmer call @bp 61407 has strength 15.14; Genemark calls start at 61407
    /note=SSC: 61407-63017 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_FUDGETART_118 [Mycobacterium phage FudgeTart] ],,NCBI, q1:s1 100.0% 0.0 GAP: 86 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.161, -4.325675514574479, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_FUDGETART_118 [Mycobacterium phage FudgeTart] ],,AYD83585,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 116- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 63028 - 63531
  /gene="119"
  /product="gp119"
  /function="acetyltransferase"
  /locus tag="Matsumoto_119"
    /note=Original Glimmer call @bp 63028 has strength 17.31; Genemark calls start at 63028
    /note=SSC: 63028-63531 CP: yes SCS: both ST: SS BLAST-Start: [gp118 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.51359E-119 GAP: 10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.303, -1.9310779259753799, yes F: acetyltransferase SIF-BLAST: ,,[gp118 [Mycobacterium phage Bxz1] ],,NP_818191,100.0,3.51359E-119 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 117- acetyltransferase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 63528 - 64517
  /gene="120"
  /product="gp120"
  /function="hypothetical protein"
  /locus tag="Matsumoto_120"
    /note=Original Glimmer call @bp 63528 has strength 16.85; Genemark calls start at 63528
    /note=SSC: 63528-64517 CP: yes SCS: both ST: SS BLAST-Start: [gp119 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.974, -5.371913467750883, no F: hypothetical protein SIF-BLAST: ,,[gp119 [Mycobacterium phage Bxz1] ],,NP_818192,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 118- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 64517 - 65113
  /gene="121"
  /product="gp121"
  /function="hypothetical protein"
  /locus tag="Matsumoto_121"
    /note=Original Glimmer call @bp 64517 has strength 13.75; Genemark calls start at 64517
    /note=SSC: 64517-65113 CP: yes SCS: both ST: SS BLAST-Start: [gp120 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.22056E-146 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.174, -4.36137266396122, no F: hypothetical protein SIF-BLAST: ,,[gp120 [Mycobacterium phage Bxz1] ],,NP_818193,100.0,3.22056E-146 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 119- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 65110 - 65910
  /gene="122"
  /product="gp122"
  /function="hypothetical protein"
  /locus tag="Matsumoto_122"
    /note=Original Glimmer call @bp 65110 has strength 12.08; Genemark calls start at 65110
    /note=SSC: 65110-65910 CP: yes SCS: both ST: SS BLAST-Start: [gp119 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.129, -4.45540384879315, no F: hypothetical protein SIF-BLAST: ,,[gp119 [Mycobacterium phage Cali] ],,YP_002224592,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 120- not informative for function
    /note=NKF supported by Blast, and PhagesDB. poor coverage value makes HHpred poor support, not a TMM protein

CDS 65907 - 66362
  /gene="123"
  /product="gp123"
  /function="hypothetical protein"
  /locus tag="Matsumoto_123"
    /note=Original Glimmer call @bp 65907 has strength 13.22; Genemark calls start at 65907
    /note=SSC: 65907-66362 CP: yes SCS: both ST: SS BLAST-Start: [gp122 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.61949E-104 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.895, -5.711975353186392, no F: hypothetical protein SIF-BLAST: ,,[gp122 [Mycobacterium phage Bxz1] ],,NP_818195,100.0,1.61949E-104 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 121- not informative for function
    /note=NKF supported by Blast, and PhagesDB. one supporting HHpred for minor capsid protein, only evidence for function, not enough by itself, not a TMM protein

CDS 66359 - 67072
  /gene="124"
  /product="gp124"
  /function="hypothetical protein"
  /locus tag="Matsumoto_124"
    /note=Original Glimmer call @bp 66359 has strength 18.34; Genemark calls start at 66359
    /note=SSC: 66359-67072 CP: yes SCS: both ST: SS BLAST-Start: [gp123 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.21036E-173 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.227, -2.1518296047551457, yes F: hypothetical protein SIF-BLAST: ,,[gp123 [Mycobacterium phage Bxz1] ],,NP_818196,100.0,9.21036E-173 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 122- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 67138 - 68883
  /gene="125"
  /product="gp125"
  /function="tail sheath protein"
  /locus tag="Matsumoto_125"
    /note=Original Glimmer call @bp 67138 has strength 19.94; Genemark calls start at 67138
    /note=SSC: 67138-68883 CP: yes SCS: both ST: SS BLAST-Start: [tail sheath [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: 65 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.784, -3.6716023243868, yes F: tail sheath protein SIF-BLAST: ,,[tail sheath [Mycobacterium phage ScottMcG] ],,YP_002224151,100.0,0.0 SIF-HHPRED: Pyocin sheath PA0622; bacteriocin, pyocin, helix, ANTIMICROBIAL PROTEIN; 2.9A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)},,,6PYT_P,57.4871,100.0 SIF-Syn: syntenic to Napoleon13 gene 123- tail sheath protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 68918 - 69385
  /gene="126"
  /product="gp126"
  /function="hypothetical protein"
  /locus tag="Matsumoto_126"
    /note=Original Glimmer call @bp 68918 has strength 15.5; Genemark calls start at 68918
    /note=SSC: 68918-69385 CP: yes SCS: both ST: SS BLAST-Start: [virion structural protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.32972E-109 GAP: 34 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.303, -2.838489286749966, yes F: hypothetical protein SIF-BLAST: ,,[virion structural protein [Mycobacterium phage Bxz1] ],,NP_818198,100.0,9.32972E-109 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 124- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value, or poor coverage makes HHpred poor support, NCBI blast support virion structural protein, not a TMM protein

CDS 69398 - 70231
  /gene="127"
  /product="gp127"
  /function="hypothetical protein"
  /locus tag="Matsumoto_127"
    /note=Original Glimmer call @bp 69398 has strength 5.54; Genemark calls start at 69398
    /note=SSC: 69398-70231 CP: yes SCS: both ST: SS BLAST-Start: [gp126 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.097, -4.522979412939132, no F: hypothetical protein SIF-BLAST: ,,[gp126 [Mycobacterium phage Bxz1] ],,NP_818199,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 125- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 70244 - 70771
  /gene="128"
  /product="gp128"
  /function="tail assembly chaperone"
  /locus tag="Matsumoto_128"
    /note=Original Glimmer call @bp 70232 has strength 10.25; Genemark calls start at 70232
    /note=SSC: 70244-70771 CP: yes SCS: both-cs ST: SS BLAST-Start: [tail assembly chaperone [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.61289E-124 GAP: 12 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.759, -3.899580331731527, yes F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Mycobacterium phage Bxz1] ],,NP_818201,100.0,5.61289E-124 SIF-HHPRED: Phage_TAC_13 ; Phage tail assembly chaperone, TAC,,,PF16459.8,60.5714,96.8 SIF-Syn: Quite a number of genes in that pham in closely related C1 phages are syntenic with Yassified_122 supporting the called function.
    /note=Even though Glimmer and Genemark predict 70232, the most manual annotations are for 70244 with ATG as start codon. The Genemark report supports the call. All sources of evidence coincide in support the call for tail assembly chaperone.

CDS join(70244..70759,70759..71142)
  /gene="129"
  /product="gp129"
  /function="tail assembly chaperone"
  /locus tag="Matsumoto_129"
    /note=
    /note=SSC: 70244-71142 CP: no SCS: neither ST: NI BLAST-Start: [tail assembly chaperone [Mycobacterium phage ET08] ],,NCBI, q1:s5 100.0% 0.0 GAP: -528 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.759, -3.899580331731527, yes F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Mycobacterium phage ET08] ],,YP_003347797,98.6799,0.0 SIF-HHPRED: Phage_TAC_13 ; Phage tail assembly chaperone, TAC,,,PF16459.8,35.4515,94.9 SIF-Syn: 

CDS 71142 - 73400
  /gene="130"
  /product="gp130"
  /function="tape measure protein"
  /locus tag="Matsumoto_130"
    /note=Original Glimmer call @bp 71142 has strength 13.87; Genemark calls start at 71142
    /note=SSC: 71142-73400 CP: yes SCS: both ST: SS BLAST-Start: [tail length tape measure protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.63, -3.482870966776971, no F: tape measure protein SIF-BLAST: ,,[tail length tape measure protein [Mycobacterium phage Bxz1] ],,NP_818202,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 128- tape measure protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 73400 - 74083
  /gene="131"
  /product="gp131"
  /function="minor tail protein"
  /locus tag="Matsumoto_131"
    /note=Original Glimmer call @bp 73400 has strength 16.28; Genemark calls start at 73400
    /note=SSC: 73400-74083 CP: yes SCS: both ST: SS BLAST-Start: [gp130 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.062E-166 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.494, -3.6907860541164537, no F: minor tail protein SIF-BLAST: ,,[gp130 [Mycobacterium phage Bxz1] ],,NP_818203,100.0,2.062E-166 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 129- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 74099 - 74269
  /gene="132"
  /product="gp132"
  /function="hypothetical protein"
  /locus tag="Matsumoto_132"
    /note=Original Glimmer call @bp 74099 has strength 9.62; Genemark calls start at 74099
    /note=SSC: 74099-74269 CP: yes SCS: both ST: SS BLAST-Start: [gp131 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.35654E-32 GAP: 15 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.052, -3.3633184689272606, yes F: hypothetical protein SIF-BLAST: ,,[gp131 [Mycobacterium phage Bxz1] ],,NP_818204,100.0,1.35654E-32 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 130- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 74273 - 74863
  /gene="133"
  /product="gp133"
  /function="hypothetical protein"
  /locus tag="Matsumoto_133"
    /note=Original Glimmer call @bp 74273 has strength 10.47; Genemark calls start at 74273
    /note=SSC: 74273-74863 CP: yes SCS: both ST: SS BLAST-Start: [gp132 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.36587E-142 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.611, -5.62127637145861, no F: hypothetical protein SIF-BLAST: ,,[gp132 [Mycobacterium phage Bxz1] ],,NP_818205,100.0,4.36587E-142 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 131- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 74863 - 77709
  /gene="134"
  /product="gp134"
  /function="minor tail protein"
  /locus tag="Matsumoto_134"
    /note=Original Glimmer call @bp 74863 has strength 13.59; Genemark calls start at 74863
    /note=SSC: 74863-77709 CP: yes SCS: both ST: SS BLAST-Start: [virion structural protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.377, -3.935403931688939, no F: minor tail protein SIF-BLAST: ,,[virion structural protein [Mycobacterium phage Bxz1] ],,NP_818206,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 132- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 77709 - 79175
  /gene="135"
  /product="gp135"
  /function="minor tail protein"
  /locus tag="Matsumoto_135"
    /note=Original Glimmer call @bp 77709 has strength 13.31; Genemark calls start at 77709
    /note=SSC: 77709-79175 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Mycobacterium phage Dandelion] ],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.052, -4.6353190821692705, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Mycobacterium phage Dandelion] ],,YP_009012916,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 133- not informative for function
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 79175 - 79930
  /gene="136"
  /product="gp136"
  /function="minor tail protein"
  /locus tag="Matsumoto_136"
    /note=Original Glimmer call @bp 79175 has strength 8.21; Genemark calls start at 79175
    /note=SSC: 79175-79930 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 8.3777E-162 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.167, -4.455662434380964, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Mycobacterium phage Bxz1] ],,NP_818208,100.0,8.3777E-162 SIF-HHPRED:  SIF-Syn: syntenic to Zeenon gene 139- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast.

CDS 79965 - 80381
  /gene="137"
  /product="gp137"
  /function="baseplate wedge protein"
  /locus tag="Matsumoto_137"
    /note=Original Glimmer call @bp 79965 has strength 13.85; Genemark calls start at 79965
    /note=SSC: 79965-80381 CP: yes SCS: both ST: SS BLAST-Start: [baseplate protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.34529E-95 GAP: 34 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -2.3335289980954053, yes F: baseplate wedge protein SIF-BLAST: ,,[baseplate protein [Mycobacterium phage Bxz1] ],,NP_818209,100.0,4.34529E-95 SIF-HHPRED: tail sheath initiator protein, gp15; Myoviridae, Phage, Baseplate complex, VIRUS;{Vibrio phage XM1},,,7KH1_D7,95.6522,99.8 SIF-Syn: syntenic to Napoleon13 gene 135- baseplate wedge protein
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 80392 - 82131
  /gene="138"
  /product="gp138"
  /function="baseplate J protein"
  /locus tag="Matsumoto_138"
    /note=Original Glimmer call @bp 80392 has strength 19.24; Genemark calls start at 80392
    /note=SSC: 80392-82131 CP: yes SCS: both ST: SS BLAST-Start: [baseplate wedge subunit [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: 10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.303, -1.9310779259753799, yes F: baseplate J protein SIF-BLAST: ,,[baseplate wedge subunit [Mycobacterium phage ScottMcG] ],,YP_002224164,100.0,0.0 SIF-HHPRED: Baseplate Wedge 2 protein, gp29; Myophage, redox trigger, disulfides, VIRUS; 3.2A {Agrobacterium phage Milano},,,8FQC_h1,99.4819,100.0 SIF-Syn: syntenic to Napoleon13 gene 136- baseplate wedge protein
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 82134 - 82469
  /gene="139"
  /product="gp139"
  /function="hypothetical protein"
  /locus tag="Matsumoto_139"
    /note=Original Glimmer call @bp 82134 has strength 9.38; Genemark calls start at 82134
    /note=SSC: 82134-82469 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_137 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 9.55267E-74 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.688, -4.048329621256372, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_137 [Mycobacterium phage ScottMcG] ],,YP_002224165,100.0,9.55267E-74 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 137- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 82466 - 82612
  /gene="140"
  /product="gp140"
  /function="hypothetical protein"
  /locus tag="Matsumoto_140"
    /note=Original Glimmer call @bp 82466 has strength 9.37; Genemark calls start at 82466
    /note=SSC: 82466-82612 CP: yes SCS: both ST: SS BLAST-Start: [gp140 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.06994E-26 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.528, -5.795782549058414, no F: hypothetical protein SIF-BLAST: ,,[gp140 [Mycobacterium phage Bxz1] ],,NP_818213,100.0,7.06994E-26 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 138- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 82609 - 82752
  /gene="141"
  /product="gp141"
  /function="hypothetical protein"
  /locus tag="Matsumoto_141"
    /note=Original Glimmer call @bp 82609 has strength 21.37; Genemark calls start at 82609
    /note=SSC: 82609-82752 CP: yes SCS: both ST: SS BLAST-Start: [gp141 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.45131E-22 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.292, -2.0949393225970705, yes F: hypothetical protein SIF-BLAST: ,,[gp141 [Mycobacterium phage Bxz1] ],,NP_818214,100.0,4.45131E-22 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 139- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, topcons supports a transmembrane protein.

CDS 82754 - 84109
  /gene="142"
  /product="gp142"
  /function="minor tail protein"
  /locus tag="Matsumoto_142"
    /note=Original Glimmer call @bp 82754 has strength 18.0; Genemark calls start at 82754
    /note=SSC: 82754-84109 CP: yes SCS: both ST: SS BLAST-Start: [virion structural protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.796, -5.443606692405957, no F: minor tail protein SIF-BLAST: ,,[virion structural protein [Mycobacterium phage Bxz1] ],,NP_818215,100.0,0.0 SIF-HHPRED: Pam3 baseplate wedge gp23; baseplate, VIRUS, VIRAL PROTEIN; 3.19A {uncultured cyanophage},,,7YFZ_M,43.9024,99.3 SIF-Syn: syntenic to Napoleon13 gene 140- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 84121 - 87924
  /gene="143"
  /product="gp143"
  /function="minor tail protein"
  /locus tag="Matsumoto_143"
    /note=Original Glimmer call @bp 84121 has strength 15.26; Genemark calls start at 84121
    /note=SSC: 84121-87924 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Mycobacterium phage LifeSavor]],,NCBI, q1:s1 100.0% 0.0 GAP: 11 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.292, -2.782170923661845, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Mycobacterium phage LifeSavor]],,AVI04742,99.9211,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 141- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 88002 - 88622
  /gene="144"
  /product="gp144"
  /function="hypothetical protein"
  /locus tag="Matsumoto_144"
    /note=Original Glimmer call @bp 88002 has strength 5.41; Genemark calls start at 88299
    /note=SSC: 88002-88622 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein GHOST_145 [Mycobacterium phage Ghost] ],,NCBI, q1:s1 100.0% 8.06509E-152 GAP: 77 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.502, -3.609999816735608, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein GHOST_145 [Mycobacterium phage Ghost] ],,AEJ94846,100.0,8.06509E-152 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 142- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS complement (88628 - 88954)
  /gene="145"
  /product="gp145"
  /function="hypothetical protein"
  /locus tag="Matsumoto_145"
    /note=Original Glimmer call @bp 88954 has strength 10.04; Genemark calls start at 88954
    /note=SSC: 88954-88628 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_LIFESAVOR_144 [Mycobacterium phage LifeSavor]],,NCBI, q1:s1 100.0% 1.45114E-72 GAP: 38 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.63, -3.4219145408355454, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_LIFESAVOR_144 [Mycobacterium phage LifeSavor]],,AVI04743,100.0,1.45114E-72 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 143- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, some topcons results supports sp1-26

CDS complement (88993 - 89319)
  /gene="146"
  /product="gp146"
  /function="hypothetical protein"
  /locus tag="Matsumoto_146"
    /note=Original Glimmer call @bp 89319 has strength 12.69; Genemark calls start at 89319
    /note=SSC: 89319-88993 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_LIFESAVOR_145 [Mycobacterium phage LifeSavor]],,NCBI, q1:s1 100.0% 2.75159E-71 GAP: 178 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.216, -2.1123791669543204, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_LIFESAVOR_145 [Mycobacterium phage LifeSavor]],,AVI04744,100.0,2.75159E-71 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 144- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 89498 - 89971
  /gene="147"
  /product="gp147"
  /function="hypothetical protein"
  /locus tag="Matsumoto_147"
    /note=Original Glimmer call @bp 89498 has strength 16.96; Genemark calls start at 89498
    /note=SSC: 89498-89971 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein M181_gp180 [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 2.45591E-108 GAP: 178 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.216, -2.253377680616507, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M181_gp180 [Mycobacterium phage Gizmo] ],,YP_008060947,100.0,2.45591E-108 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 145- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 90140 - 90283
  /gene="148"
  /product="gp148"
  /function="hypothetical protein"
  /locus tag="Matsumoto_148"
    /note=Original Glimmer call @bp 90140 has strength 16.21; Genemark calls start at 90140
    /note=SSC: 90140-90283 CP: yes SCS: both ST: SS BLAST-Start: [gp147 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.61038E-24 GAP: 168 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.216, -2.1123791669543204, yes F: hypothetical protein SIF-BLAST: ,,[gp147 [Mycobacterium phage Bxz1] ],,NP_818220,100.0,5.61038E-24 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 146- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 90283 - 90609
  /gene="149"
  /product="gp149"
  /function="hypothetical protein"
  /locus tag="Matsumoto_149"
    /note=Original Glimmer call @bp 90283 has strength 11.77; Genemark calls start at 90283
    /note=SSC: 90283-90609 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_LIFESAVOR_148 [Mycobacterium phage LifeSavor]],,NCBI, q1:s1 100.0% 1.93644E-71 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.523003374675015, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_LIFESAVOR_148 [Mycobacterium phage LifeSavor]],,AVI04747,100.0,1.93644E-71 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 147- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 90672 - 90917
  /gene="150"
  /product="gp150"
  /function="hypothetical protein"
  /locus tag="Matsumoto_150"
    /note=Original Glimmer call @bp 90672 has strength 15.35; Genemark calls start at 90672
    /note=SSC: 90672-90917 CP: yes SCS: both ST: SS BLAST-Start: [gp147 [Mycobacterium phage Cali] ],,NCBI, q1:s1 100.0% 1.34835E-48 GAP: 62 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -2.6013996449736907, yes F: hypothetical protein SIF-BLAST: ,,[gp147 [Mycobacterium phage Cali] ],,YP_002224620,100.0,1.34835E-48 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 148- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS 90910 - 91140
  /gene="151"
  /product="gp151"
  /function="hypothetical protein"
  /locus tag="Matsumoto_151"
    /note=Original Glimmer call @bp 90910 has strength 2.03; Genemark calls start at 90910
    /note=SSC: 90910-91140 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_148 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 6.21275E-49 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.272, -4.620091156089588, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_148 [Mycobacterium phage ScottMcG] ],,YP_002224176,100.0,6.21275E-49 SIF-HHPRED:  SIF-Syn: gene with same locus in SHia doesn`t have a known function.
    /note=BLAST not informative about function
    /note=HHPred not informative about function.

tRNA 91332 - 91405
  /gene="152"
  /product="tRNA-Pro(tgg)"
  /locus tag="MATSUMOTO_152"
    /note=tRNA-Pro(tgg)

tRNA 91421 - 91491
  /gene="153"
  /product="tRNA-Trp(cca)"
  /locus tag="MATSUMOTO_153"
    /note=tRNA-Trp(cca)

tRNA 91493 - 91579
  /gene="154"
  /product="tRNA-Tyr(gta)"
  /locus tag="MATSUMOTO_154"
    /note=tRNA-Tyr(gta)

CDS 91662 - 91943
  /gene="155"
  /product="gp155"
  /function="hypothetical protein"
  /locus tag="Matsumoto_155"
    /note=Original Glimmer call @bp 91662 has strength 7.73; Genemark calls start at 91662
    /note=SSC: 91662-91943 CP: yes SCS: both ST: SS BLAST-Start: [gp151 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 1.05895E-60 GAP: 521 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.2763497933341483, yes F: hypothetical protein SIF-BLAST: ,,[gp151 [Mycobacterium phage Rizal] ],,YP_002224841,100.0,1.05895E-60 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 153- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 92008 - 92382
  /gene="156"
  /product="gp156"
  /function="peptidyl tRNA hydrolase"
  /locus tag="Matsumoto_156"
    /note=Original Glimmer call @bp 92008 has strength 8.67; Genemark calls start at 92008
    /note=SSC: 92008-92382 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_153 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.70651E-85 GAP: 64 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.953, -4.843798539558957, no F: peptidyl tRNA hydrolase SIF-BLAST: ,,[hypothetical protein SCOTTMCG_153 [Mycobacterium phage ScottMcG] ],,YP_002224178,100.0,1.70651E-85 SIF-HHPRED: Peptidyl-tRNA hydrolase; alpha-beta, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Cytoplasm, Hydrolase; 1.8A {Archaeoglobus fulgidus} SCOP: c.131.1.1,,,3ERJ_B,87.9032,99.9 SIF-Syn: syntenic to Napoleon13 gene 15- peptidyl trna hydrolase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

tRNA 92632 - 92702
  /gene="157"
  /product="tRNA-Stop(cta)"
  /locus tag="MATSUMOTO_157"
    /note=tRNA-Stop(cta)

tRNA 92854 - 92927
  /gene="158"
  /product="tRNA-Met(cat)"
  /locus tag="MATSUMOTO_158"
    /note=tRNA-Met(cat)

tRNA 93056 - 93126
  /gene="159"
  /product="tRNA-Cys(gca)"
  /locus tag="MATSUMOTO_159"
    /note=tRNA-Cys(gca)

tRNA 93195 - 93265
  /gene="160"
  /product="tRNA-Glu(ctc)"
  /locus tag="MATSUMOTO_160"
    /note=tRNA-Glu(ctc)

tRNA 93268 - 93341
  /gene="161"
  /product="tRNA-His(gtg)"
  /locus tag="MATSUMOTO_161"
    /note=tRNA-His(gtg)

tRNA 93503 - 93576
  /gene="162"
  /product="tRNA-Ala(tgc)"
  /locus tag="MATSUMOTO_162"
    /note=tRNA-Ala(tgc)

tRNA 93767 - 93838
  /gene="163"
  /product="tRNA-Phe(gaa)"
  /locus tag="MATSUMOTO_163"
    /note=tRNA-Phe(gaa)

tRNA 93845 - 93917
  /gene="164"
  /product="tRNA-Val(cac)"
  /locus tag="MATSUMOTO_164"
    /note=tRNA-Val(cac)

tRNA 94037 - 94108
  /gene="165"
  /product="tRNA-Lys(ctt)"
  /locus tag="MATSUMOTO_165"
    /note=tRNA-Lys(ctt)

tRNA 94114 - 94189
  /gene="166"
  /product="tRNA-Glu(ttc)"
  /locus tag="MATSUMOTO_166"
    /note=tRNA-Glu(ttc)

tRNA 94270 - 94341
  /gene="167"
  /product="tRNA-Gly(tcc)"
  /locus tag="MATSUMOTO_167"
    /note=tRNA-Gly(tcc)

tRNA 94424 - 94496
  /gene="168"
  /product="tRNA-Thr(cgt)"
  /locus tag="MATSUMOTO_168"
    /note=tRNA-Thr(cgt)

tRNA 94499 - 94570
  /gene="169"
  /product="tRNA-Thr(tgt)"
  /locus tag="MATSUMOTO_169"
    /note=tRNA-Thr(tgt)

CDS 94599 - 94973
  /gene="170"
  /product="gp170"
  /function="HNH endonuclease"
  /locus tag="Matsumoto_170"
    /note=Original Glimmer call @bp 94599 has strength 4.36; Genemark calls start at 94599
    /note=SSC: 94599-94973 CP: yes SCS: both ST: SS BLAST-Start: [HNH endonuclease [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 4.06292E-86 GAP: 2216 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.633, -6.261894655997472, no F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Mycobacterium phage ArcherS7] ],,YP_008061413,100.0,4.06292E-86 SIF-HHPRED: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2},,,5H0M_A,58.0645,97.7 SIF-Syn: syntenic to Napoleon13 gene 169- HNH endonuclease
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

tRNA 94979 - 95050
  /gene="171"
  /product="tRNA-Thr(ggt)"
  /locus tag="MATSUMOTO_171"
    /note=tRNA-Thr(ggt)

CDS 95121 - 96197
  /gene="172"
  /product="gp172"
  /function="minor tail protein"
  /locus tag="Matsumoto_172"
    /note=Original Glimmer call @bp 95121 has strength 15.77; Genemark calls start at 95121
    /note=SSC: 95121-96197 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein with lysin activity [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 0.0 GAP: 147 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.727, -3.139452255336754, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein with lysin activity [Mycobacterium phage Rizal] ],,YP_002224844,100.0,0.0 SIF-HHPRED: ClbP peptidase; alpha/beta, disulfide bridge, peptidase, HYDROLASE; HET: APB, PO4; 2.19A {Escherichia coli},,,4E6W_C,93.0168,100.0 SIF-Syn: syntenic to Napoleon13 gene 171- minor tail protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 96205 - 96363
  /gene="173"
  /product="gp173"
  /function="hypothetical protein"
  /locus tag="Matsumoto_173"
    /note=Original Glimmer call @bp 96205 has strength 6.24; Genemark calls start at 96205
    /note=SSC: 96205-96363 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein ET08_161 [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 7.47203E-27 GAP: 7 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.298, -4.691784380744663, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein ET08_161 [Mycobacterium phage ET08] ],,YP_003347823,100.0,7.47203E-27 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 172- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

tRNA 96374 - 96446
  /gene="174"
  /product="tRNA-Gly(gcc)"
  /locus tag="MATSUMOTO_174"
    /note=tRNA-Gly(gcc)

tRNA 96451 - 96522
  /gene="175"
  /product="tRNA-Asp(gtc)"
  /locus tag="MATSUMOTO_175"
    /note=tRNA-Asp(gtc)

tRNA 96583 - 96654
  /gene="176"
  /product="tRNA-Met(cat)"
  /locus tag="MATSUMOTO_176"
    /note=tRNA-Met(cat)

tRNA 96829 - 96900
  /gene="177"
  /product="tRNA-Arg(acg)"
  /locus tag="MATSUMOTO_177"
    /note=tRNA-Arg(acg)

tRNA 96944 - 97015
  /gene="178"
  /product="tRNA-Val(gac)"
  /locus tag="MATSUMOTO_178"
    /note=tRNA-Val(gac)

tRNA 97190 - 97262
  /gene="179"
  /product="tRNA-Arg(cct)"
  /locus tag="MATSUMOTO_179"
    /note=tRNA-Arg(cct)

tmRNA 97277 - 97711
  /gene="180"
  /locus tag="MATSUMOTO_180"
    /note=

tRNA 97804 - 97878
  /gene="181"
  /product="tRNA-Gln(ttg)"
  /locus tag="MATSUMOTO_181"
    /note=tRNA-Gln(ttg)

tRNA 97883 - 97955
  /gene="182"
  /product="tRNA-Arg(tct)"
  /locus tag="MATSUMOTO_182"
    /note=tRNA-Arg(tct)

tRNA 98024 - 98098
  /gene="183"
  /product="tRNA-Lys(ttt)"
  /locus tag="MATSUMOTO_183"
    /note=tRNA-Lys(ttt)

CDS 98173 - 98526
  /gene="184"
  /product="gp184"
  /function="hypothetical protein"
  /locus tag="Matsumoto_184"
    /note=Original Glimmer call @bp 98173 has strength 15.45; Genemark calls start at 98173
    /note=SSC: 98173-98526 CP: yes SCS: both ST: SS BLAST-Start: [gp180 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 9.19819E-81 GAP: 1809 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.282, -4.599515895103776, no F: hypothetical protein SIF-BLAST: ,,[gp180 [Mycobacterium phage Rizal] ],,YP_002224845,100.0,9.19819E-81 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 184- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS complement (98607 - 99083)
  /gene="185"
  /product="gp185"
  /function="hypothetical protein"
  /locus tag="Matsumoto_185"
    /note=Original Glimmer call @bp 99083 has strength 12.4; Genemark calls start at 99083
    /note=SSC: 99083-98607 CP: yes SCS: both ST: SS BLAST-Start: [gp178 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.71853E-111 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.795, -3.077027835973012, yes F: hypothetical protein SIF-BLAST: ,,[gp178 [Mycobacterium phage Bxz1] ],,NP_818229,100.0,2.71853E-111 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 185- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS complement (99083 - 100945)
  /gene="186"
  /product="gp186"
  /function="DNA helicase"
  /locus tag="Matsumoto_186"
    /note=Original Glimmer call @bp 100945 has strength 15.49; Genemark calls start at 100945
    /note=SSC: 100945-99083 CP: yes SCS: both ST: SS BLAST-Start: [gp184 [Mycobacterium phage Spud] ],,NCBI, q1:s1 100.0% 0.0 GAP: 115 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.421, -6.530842035202567, no F: DNA helicase SIF-BLAST: ,,[gp184 [Mycobacterium phage Spud] ],,YP_002224405,100.0,0.0 SIF-HHPRED: Helicase of the snf2/rad54 family; protein-DNA complex, HYDROLASE-DNA complex COMPLEX; HET: MSE; 3.0A {Sulfolobus solfataricus} SCOP: c.37.1.19,,,1Z63_A,86.129,100.0 SIF-Syn: syntenic to Napoleon13 gene 186- DNA helicase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 101061 - 101363
  /gene="187"
  /product="gp187"
  /function="hypothetical protein"
  /locus tag="Matsumoto_187"
    /note=Original Glimmer call @bp 101061 has strength 16.48; Genemark calls start at 101061
    /note=SSC: 101061-101363 CP: yes SCS: both ST: SS BLAST-Start: [gp185 [Mycobacterium phage Spud] ],,NCBI, q1:s1 100.0% 6.72389E-64 GAP: 115 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.5052746077145835, yes F: hypothetical protein SIF-BLAST: ,,[gp185 [Mycobacterium phage Spud] ],,YP_002224406,100.0,6.72389E-64 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 187- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS 101796 - 102221
  /gene="188"
  /product="gp188"
  /function="hypothetical protein"
  /locus tag="Matsumoto_188"
    /note=Original Glimmer call @bp 101796 has strength 6.24; Genemark calls start at 101841
    /note=SSC: 101796-102221 CP: yes SCS: both-gl ST: SS BLAST-Start: [gp181 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.65327E-98 GAP: 432 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.362, -4.556208905684731, no F: hypothetical protein SIF-BLAST: ,,[gp181 [Mycobacterium phage Bxz1] ],,NP_818232,100.0,1.65327E-98 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 188- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS 102271 - 102477
  /gene="189"
  /product="gp189"
  /function="hypothetical protein"
  /locus tag="Matsumoto_189"
    /note=Original Glimmer call @bp 102271 has strength 11.68; Genemark calls start at 102271
    /note=SSC: 102271-102477 CP: yes SCS: both ST: SS BLAST-Start: [gp182 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.66644E-40 GAP: 49 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.551, -4.4158953075094765, yes F: hypothetical protein SIF-BLAST: ,,[gp182 [Mycobacterium phage Bxz1] ],,NP_818233,100.0,3.66644E-40 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 189- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS 102477 - 102653
  /gene="190"
  /product="gp190"
  /function="hypothetical protein"
  /locus tag="Matsumoto_190"
    /note=Original Glimmer call @bp 102477 has strength 13.33; Genemark calls start at 102477
    /note=SSC: 102477-102653 CP: yes SCS: both ST: SS BLAST-Start: [gp183 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.22073E-31 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.151, -4.487636275856737, yes F: hypothetical protein SIF-BLAST: ,,[gp183 [Mycobacterium phage Bxz1] ],,NP_818234,100.0,7.22073E-31 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 190- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support

CDS 102650 - 102739
  /gene="191"
  /product="gp191"
  /function="hypothetical protein"
  /locus tag="Matsumoto_191"
    /note=Genemark calls start at 102650
    /note=SSC: 102650-102739 CP: yes SCS: genemark ST: SS BLAST-Start: [hypothetical protein M181_gp163 [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 7.40981E-12 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.258, -4.122392812353492, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M181_gp163 [Mycobacterium phage Gizmo] ],,YP_008060964,100.0,7.40981E-12 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 191- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 102730 - 102996
  /gene="192"
  /product="gp192"
  /function="hypothetical protein"
  /locus tag="Matsumoto_192"
    /note=Original Glimmer call @bp 102730 has strength 18.51; Genemark calls start at 102730
    /note=SSC: 102730-102996 CP: yes SCS: both ST: SS BLAST-Start: [gp187 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 2.85227E-56 GAP: -10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.811, -3.0425830684175623, yes F: hypothetical protein SIF-BLAST: ,,[gp187 [Mycobacterium phage Rizal] ],,YP_002224852,100.0,2.85227E-56 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 192- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 103108 - 103869
  /gene="193"
  /product="gp193"
  /function="hypothetical protein"
  /locus tag="Matsumoto_193"
    /note=Original Glimmer call @bp 103108 has strength 19.7; Genemark calls start at 103108
    /note=SSC: 103108-103869 CP: yes SCS: both ST: SS BLAST-Start: [gp190 [Mycobacterium phage Spud] ],,NCBI, q1:s1 100.0% 0.0 GAP: 111 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.5052746077145835, yes F: hypothetical protein SIF-BLAST: ,,[gp190 [Mycobacterium phage Spud] ],,YP_002224411,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 193- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 103873 - 104520
  /gene="194"
  /product="gp194"
  /function="hypothetical protein"
  /locus tag="Matsumoto_194"
    /note=Original Glimmer call @bp 103873 has strength 12.18; Genemark calls start at 103873
    /note=SSC: 103873-104520 CP: yes SCS: both ST: SS BLAST-Start: [gp186 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.532E-155 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.059, -2.442961286954254, yes F: hypothetical protein SIF-BLAST: ,,[gp186 [Mycobacterium phage Bxz1] ],,NP_818237,100.0,2.532E-155 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 194- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 104561 - 105250
  /gene="195"
  /product="gp195"
  /function="thymidylate kinase"
  /locus tag="Matsumoto_195"
    /note=Original Glimmer call @bp 104561 has strength 12.83; Genemark calls start at 104561
    /note=SSC: 104561-105250 CP: yes SCS: both ST: SS BLAST-Start: [thymidylate kinase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.9531E-164 GAP: 40 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -3.6727816321281046, yes F: thymidylate kinase SIF-BLAST: ,,[thymidylate kinase [Mycobacterium phage Bxz1] ],,NP_818238,100.0,2.9531E-164 SIF-HHPRED: c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | CLASS: Alpha and beta proteins (a/b), FOLD: P-loop containing nucleoside triphosphate hydrolases, SUPFAM: P-loop containing nucleoside triphosphate hydrolases, FAM: Nucleotide and nucleoside kinases,,,SCOP_d1nn5a_,98.69,99.9 SIF-Syn: syntenic to Napoleon13 gene 195- thymidylate kinase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 105222 - 106265
  /gene="196"
  /product="gp196"
  /function="aminotransferase"
  /locus tag="Matsumoto_196"
    /note=Original Glimmer call @bp 105222 has strength 10.45; Genemark calls start at 105222
    /note=SSC: 105222-106265 CP: yes SCS: both ST: SS BLAST-Start: [aminotransferase [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: -29 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.298, -4.947056885847969, no F: aminotransferase SIF-BLAST: ,,[aminotransferase [Mycobacterium phage ScottMcG] ],,YP_002224191,100.0,0.0 SIF-HHPRED: Pyruvate transaminase; aminotransferase, TRANSFERASE; HET: MSE, BEN, SO4, PMP; 1.9A {Vibrio fluvialis} SCOP: c.67.1.0,,,4E3Q_D,94.2363,100.0 SIF-Syn: syntenic to Napoleon13 gene 196- aminotransferase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 106285 - 106752
  /gene="197"
  /product="gp197"
  /function="hypothetical protein"
  /locus tag="Matsumoto_197"
    /note=Original Glimmer call @bp 106309 has strength 16.62; Genemark calls start at 106348
    /note=SSC: 106285-106752 CP: yes SCS: both-cs ST: SS BLAST-Start: [gp194 [Mycobacterium phage Spud] ],,NCBI, q1:s1 100.0% 1.44238E-111 GAP: 19 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.708, -4.483253196181581, no F: hypothetical protein SIF-BLAST: ,,[gp194 [Mycobacterium phage Spud] ],,YP_002224415,100.0,1.44238E-111 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 197- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 106819 - 107205
  /gene="198"
  /product="gp198"
  /function="hypothetical protein"
  /locus tag="Matsumoto_198"
    /note=Original Glimmer call @bp 106819 has strength 13.94; Genemark calls start at 106819
    /note=SSC: 106819-107205 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_194 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.0792E-89 GAP: 66 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.216, -2.4634880269616195, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_194 [Mycobacterium phage ScottMcG] ],,YP_002224193,100.0,1.0792E-89 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 198- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 107267 - 108049
  /gene="199"
  /product="gp199"
  /function="DnaC-like helicase loader"
  /locus tag="Matsumoto_199"
    /note=Original Glimmer call @bp 107267 has strength 14.58; Genemark calls start at 107267
    /note=SSC: 107267-108049 CP: yes SCS: both ST: SS BLAST-Start: [DnaC-like helicase loader [Mycobacterium phage Quasimodo] ],,NCBI, q1:s1 100.0% 0.0 GAP: 61 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.49, -5.73456940637445, no F: DnaC-like helicase loader SIF-BLAST: ,,[DnaC-like helicase loader [Mycobacterium phage Quasimodo] ],,YP_010058496,100.0,0.0 SIF-HHPRED: Primosomal protein DnaI; primase, helicase loader, DnaB, DnaG, DnaI, DNA replication, REPLICATION; HET: MSE; 6.1A {Geobacillus stearothermophilus},,,4M4W_O,92.6923,100.0 SIF-Syn: syntenic to Napoleon13 gene 199- DnaC-like helicase loader
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 108051 - 109307
  /gene="200"
  /product="gp200"
  /function="DnaB-like dsDNA helicase"
  /locus tag="Matsumoto_200"
    /note=Original Glimmer call @bp 108051 has strength 15.95; Genemark calls start at 108051
    /note=SSC: 108051-109307 CP: yes SCS: both ST: SS BLAST-Start: [gp193 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 0.993, -6.918086385167798, no F: DnaB-like dsDNA helicase SIF-BLAST: ,,[gp193 [Mycobacterium phage Bxz1] ],,NP_818244,100.0,0.0 SIF-HHPRED: DnaB-like replicative helicase; phage, complex, helicase, REPLICATION-DNA-RNA complex; HET: AGS;{Escherichia phage T4},,,8DUE_F,97.8469,100.0 SIF-Syn: syntenic to Napoleon13 gene 200- DnaB-like dsDna helicase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 109304 - 109510
  /gene="201"
  /product="gp201"
  /function="hypothetical protein"
  /locus tag="Matsumoto_201"
    /note=Original Glimmer call @bp 109304 has strength 16.14; Genemark calls start at 109304
    /note=SSC: 109304-109510 CP: yes SCS: both ST: SS BLAST-Start: [gp196 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 2.0173E-41 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.895, -4.963787326180191, no F: hypothetical protein SIF-BLAST: ,,[gp196 [Mycobacterium phage Rizal] ],,YP_002224861,100.0,2.0173E-41 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 201- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 109507 - 110580
  /gene="202"
  /product="gp202"
  /function="DNA primase"
  /locus tag="Matsumoto_202"
    /note=Original Glimmer call @bp 109507 has strength 7.06; Genemark calls start at 109507
    /note=SSC: 109507-110580 CP: yes SCS: both ST: SS BLAST-Start: [gp197 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.147, -5.40694046485655, no F: DNA primase SIF-BLAST: ,,[gp197 [Mycobacterium phage Rizal] ],,YP_002224862,100.0,0.0 SIF-HHPRED: DNA primase; Zinc Ribbon, TOPRIM, RNA POLYMERASE, DNA REPLICATION, TRANSFERASE; 2.0A {Aquifex aeolicus},,,2AU3_A,97.1989,100.0 SIF-Syn: syntenic to Napoleon13 gene 202- Dna primase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 110584 - 110823
  /gene="203"
  /product="gp203"
  /function="hypothetical protein"
  /locus tag="Matsumoto_203"
    /note=Original Glimmer call @bp 110584 has strength 9.72; Genemark calls start at 110584
    /note=SSC: 110584-110823 CP: yes SCS: both ST: SS BLAST-Start: [gp196 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.17752E-49 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.62, -4.01551542808139, yes F: hypothetical protein SIF-BLAST: ,,[gp196 [Mycobacterium phage Bxz1] ],,NP_818247,100.0,2.17752E-49 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 203- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 110786 - 111574
  /gene="204"
  /product="gp204"
  /function="chaperonin, DnaJ-like"
  /locus tag="Matsumoto_204"
    /note=Original Glimmer call @bp 110786 has strength 9.98; Genemark calls start at 111044
    /note=SSC: 110786-111574 CP: yes SCS: both-gl ST: SS BLAST-Start: [DnaJ domain protein [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 0.0 GAP: -38 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.648, -5.465638252962307, no F: chaperonin, DnaJ-like SIF-BLAST: ,,[DnaJ domain protein [Mycobacterium phage Gizmo] ],,YP_008060979,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 204- DnaJ-like chaperonin
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 111660 - 112631
  /gene="205"
  /product="gp205"
  /function="SSB protein"
  /locus tag="Matsumoto_205"
    /note=Original Glimmer call @bp 111681 has strength 12.95; Genemark calls start at 111681
    /note=SSC: 111660-112631 CP: yes SCS: both-cs ST: SS BLAST-Start: [single strand DNA binding protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 85 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.822, -5.389187297999249, no F: SSB protein SIF-BLAST: ,,[single strand DNA binding protein [Mycobacterium phage Bxz1] ],,NP_818249,100.0,0.0 SIF-HHPRED: gp32; T4, gp32, Dda, complex, DNA BINDING PROTEIN-DNA complex; 4.98A {Tequatrovirus T4},,,8GME_A,79.8762,99.8 SIF-Syn: syntenic to Napoleon13 gene 205- ssdna binding protein
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 112819 - 116214
  /gene="206"
  /product="gp206"
  /function="DnaE-like DNA polymerase III (alpha)"
  /locus tag="Matsumoto_206"
    /note=Original Glimmer call @bp 112819 has strength 16.64; Genemark calls start at 112819
    /note=SSC: 112819-116214 CP: yes SCS: both ST: SS BLAST-Start: [DNA polymerase [Mycobacterium phage Quasimodo] ],,NCBI, q1:s1 100.0% 0.0 GAP: 187 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.970161406017234, yes F: DnaE-like DNA polymerase III (alpha) SIF-BLAST: ,,[DNA polymerase [Mycobacterium phage Quasimodo] ],,YP_010058503,100.0,0.0 SIF-HHPRED: DNA polymerase III alpha subunit; Pol-beta-like Nucleotidyltransferase fold, TRANSFERASE; 3.0A {Thermus aquaticus},,,2HPI_A,99.7347,100.0 SIF-Syn: syntenic to Napoleon13 gene 206- Dnae-like DNA polymerase III
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 116366 - 116617
  /gene="207"
  /product="gp207"
  /function="RF-1 peptide chain release factor"
  /locus tag="Matsumoto_207"
    /note=Original Glimmer call @bp 116366 has strength 14.63; Genemark calls start at 116366
    /note=SSC: 116366-116617 CP: yes SCS: both ST: SS BLAST-Start: [RF-1 peptide chain release factor [Mycobacterium phage InterFolia] ],,NCBI, q1:s1 100.0% 5.89809E-53 GAP: 151 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.475, -3.729235625514656, no F: RF-1 peptide chain release factor SIF-BLAST: ,,[RF-1 peptide chain release factor [Mycobacterium phage InterFolia] ],,AVR77683,100.0,5.89809E-53 SIF-HHPRED: Peptide chain release factor 1, mitochondrial; human mitochondrial ribosome, release factor mtRF1, non-canonical stop codon, RIBOSOME; HET: K, 1MA, 2MG, AYA, OMU, RSQ, THC, PSU, OMG, MG; 2.9A {Homo sapiens},,,8OIT_Aa,96.3855,99.5 SIF-Syn: 
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 116614 - 117702
  /gene="208"
  /product="gp208"
  /function="RecA-like DNA recombinase"
  /locus tag="Matsumoto_208"
    /note=Original Glimmer call @bp 116584 has strength 18.26; Genemark calls start at 116614
    /note=SSC: 116614-117702 CP: yes SCS: both-gm ST: SS BLAST-Start: [UvsX-like recombinase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.708, -3.1779018267349564, no F: RecA-like DNA recombinase SIF-BLAST: ,,[UvsX-like recombinase [Mycobacterium phage Bxz1] ],,NP_818252,100.0,0.0 SIF-HHPRED: c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]},,,d1xp8a1,76.2431,100.0 SIF-Syn: syntenic to Napoleon13 gene 208- reca-like dna recombinase
    /note=supported by Blast, PhagesDB, and HHpred. not a TMM protein

CDS 117702 - 118082
  /gene="209"
  /product="gp209"
  /function="Holliday junction resolvase"
  /locus tag="Matsumoto_209"
    /note=Original Glimmer call @bp 117702 has strength 15.42; Genemark calls start at 117702
    /note=SSC: 117702-118082 CP: yes SCS: both ST: SS BLAST-Start: [Holliday junction resolvase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.66747E-88 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.637, -3.4076099559729456, yes F: Holliday junction resolvase SIF-BLAST: ,,[Holliday junction resolvase [Mycobacterium phage Bxz1] ],,NP_818253,100.0,7.66747E-88 SIF-HHPRED: Holliday junction resolvase; archeal holliday junction resolvase helicase DNA binding enzyme phage 15-6 thermus thermophilus, RECOMBINATION; HET: SO4, MSE; 2.5A {Thermus thermophilus phage 15-6},,,7BGS_A,86.5079,99.4 SIF-Syn: syntenic to Napoleon13 gene 209- holliday junction resolvase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 118079 - 118234
  /gene="210"
  /product="gp210"
  /function="hypothetical protein"
  /locus tag="Matsumoto_210"
    /note=Original Glimmer call @bp 118079 has strength 11.25; Genemark calls start at 118079
    /note=SSC: 118079-118234 CP: yes SCS: both ST: SS BLAST-Start: [gp203 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.44933E-30 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.63, -3.482870966776971, yes F: hypothetical protein SIF-BLAST: ,,[gp203 [Mycobacterium phage Bxz1] ],,NP_818254,100.0,5.44933E-30 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 210- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 118227 - 119990
  /gene="211"
  /product="gp211"
  /function="HNH endonuclease"
  /locus tag="Matsumoto_211"
    /note=Original Glimmer call @bp 118227 has strength 8.25; Genemark calls start at 118227
    /note=SSC: 118227-119990 CP: yes SCS: both ST: SS BLAST-Start: [exonuclease [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 0.0 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.668, -3.4030855957987485, no F: HNH endonuclease SIF-BLAST: ,,[exonuclease [Mycobacterium phage Rizal] ],,YP_002224871,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 211- hnh endonuclease
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 119990 - 120445
  /gene="212"
  /product="gp212"
  /function="RusA-like resolvase"
  /locus tag="Matsumoto_212"
    /note=Original Glimmer call @bp 119990 has strength 9.92; Genemark calls start at 119990
    /note=SSC: 119990-120445 CP: yes SCS: both ST: SS BLAST-Start: [RusA-like Holliday junction resolvase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.29922E-106 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.483, -3.790975366313636, no F: RusA-like resolvase SIF-BLAST: ,,[RusA-like Holliday junction resolvase [Mycobacterium phage Bxz1] ],,NP_818256,100.0,1.29922E-106 SIF-HHPRED: d.79.6.1 (A:) automated matches {Escherichia coli [TaxId: 562]} | CLASS: Alpha and beta proteins (a+b), FOLD: Bacillus chorismate mutase-like, SUPFAM: Holliday junction resolvase RusA, FAM: Holliday junction resolvase RusA,,,SCOP_d2h8ea_,97.351,99.8 SIF-Syn: syntenic to Napoleon13 gene 212- rusa-like resolvase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 120429 - 121148
  /gene="213"
  /product="gp213"
  /function="hypothetical protein"
  /locus tag="Matsumoto_213"
    /note=Original Glimmer call @bp 120429 has strength 7.87; Genemark calls start at 120429
    /note=SSC: 120429-121148 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_210 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 2.79004E-175 GAP: -17 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.976, -5.367638368103365, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_210 [Mycobacterium phage ScottMcG] ],,YP_002224209,100.0,2.79004E-175 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 213- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 121129 - 121998
  /gene="214"
  /product="gp214"
  /function="DNA binding protein"
  /locus tag="Matsumoto_214"
    /note=Original Glimmer call @bp 121129 has strength 7.04; Genemark calls start at 121195
    /note=SSC: 121129-121998 CP: yes SCS: both-gl ST: SS BLAST-Start: [gp207 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.795, -3.1379842619144376, no F: DNA binding protein SIF-BLAST: ,,[gp207 [Mycobacterium phage Bxz1] ],,NP_818258,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 214- not informative for function
    /note=NKF supported by Blast, and PhagesDB. low coverage value makes HHpred poor support

CDS 122050 - 122364
  /gene="215"
  /product="gp215"
  /function="hypothetical protein"
  /locus tag="Matsumoto_215"
    /note=Original Glimmer call @bp 122182 has strength 3.63; Genemark calls start at 122050
    /note=SSC: 122050-122364 CP: yes SCS: both-gm ST: NI BLAST-Start: [gp208 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 6.89533E-69 GAP: 51 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.998, -4.731360067354143, no F: hypothetical protein SIF-BLAST: ,,[gp208 [Mycobacterium phage Bxz1] ],,NP_818259,100.0,6.89533E-69 SIF-HHPRED:  SIF-Syn: 
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, not a TMM protein

CDS 122368 - 123177
  /gene="216"
  /product="gp216"
  /function="hypothetical protein"
  /locus tag="Matsumoto_216"
    /note=Original Glimmer call @bp 122368 has strength 14.14; Genemark calls start at 122368
    /note=SSC: 122368-123177 CP: yes SCS: both ST: SS BLAST-Start: [gp209 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.627458653341447, yes F: hypothetical protein SIF-BLAST: ,,[gp209 [Mycobacterium phage Bxz1] ],,NP_818260,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 216- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 123174 - 124199
  /gene="217"
  /product="gp217"
  /function="hydrolase"
  /locus tag="Matsumoto_217"
    /note=Original Glimmer call @bp 123183 has strength 9.77; Genemark calls start at 123183
    /note=SSC: 123174-124199 CP: yes SCS: both-cs ST: SS BLAST-Start: [gp210 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.355, -6.018071631562228, no F: hydrolase SIF-BLAST: ,,[gp210 [Mycobacterium phage Bxz1] ],,NP_818261,100.0,0.0 SIF-HHPRED: Putative hydrolase; 5-bladed beta-propeller, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE; HET: GOL, MSE; 2.8A {Bacteroides ovatus},,,4HBS_A,82.1114,100.0 SIF-Syn: syntenic to Napoleon13 gene 217- not informative for function
    /note=NKF supported by Blast, and PhagesDB. hhpred not enough evidence for function call.

CDS 124252 - 125274
  /gene="218"
  /product="gp218"
  /function="hypothetical protein"
  /locus tag="Matsumoto_218"
    /note=Original Glimmer call @bp 124252 has strength 16.7; Genemark calls start at 124252
    /note=SSC: 124252-125274 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_KBOOGIE_225 [Mycobacterium phage Kboogie]],,NCBI, q1:s1 100.0% 0.0 GAP: 52 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.161, -4.325675514574479, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_KBOOGIE_225 [Mycobacterium phage Kboogie]],,QFG10937,100.0,0.0 SIF-HHPRED: DUF3871 ; Domain of unknown function, B. Theta Gene description (DUF3871),,,PF12987.11,69.1176,99.8 SIF-Syn: syntenic to Napoleon13 gene 218- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 125271 - 125507
  /gene="219"
  /product="gp219"
  /function="hypothetical protein"
  /locus tag="Matsumoto_219"
    /note=Original Glimmer call @bp 125271 has strength 10.1; Genemark calls start at 125271
    /note=SSC: 125271-125507 CP: yes SCS: both ST: SS BLAST-Start: [gp214 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 4.11061E-48 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.407, -3.8100388651815202, no F: hypothetical protein SIF-BLAST: ,,[gp214 [Mycobacterium phage Rizal] ],,YP_002224879,100.0,4.11061E-48 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 219- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

tRNA 125630 - 125704
  /gene="220"
  /product="tRNA-Gln(ctg)"
  /locus tag="MATSUMOTO_220"
    /note=tRNA-Gln(ctg)

tRNA 125711 - 125786
  /gene="221"
  /product="tRNA-Asn(gtt)"
  /locus tag="MATSUMOTO_221"
    /note=tRNA-Asn(gtt)

CDS 125861 - 126319
  /gene="222"
  /product="gp222"
  /function="hypothetical protein"
  /locus tag="Matsumoto_222"
    /note=Original Glimmer call @bp 125861 has strength 16.67; Genemark calls start at 125861
    /note=SSC: 125861-126319 CP: yes SCS: both ST: SS BLAST-Start: [gp214 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.14224E-108 GAP: 353 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -2.7423981586358774, yes F: hypothetical protein SIF-BLAST: ,,[gp214 [Mycobacterium phage Bxz1] ],,NP_818264,100.0,3.14224E-108 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 222- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 126316 - 126759
  /gene="223"
  /product="gp223"
  /function="hypothetical protein"
  /locus tag="Matsumoto_223"
    /note=Original Glimmer call @bp 126316 has strength 10.76; Genemark calls start at 126316
    /note=SSC: 126316-126759 CP: yes SCS: both ST: SS BLAST-Start: [gp215 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.05306E-104 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.578, -3.5316035464369326, yes F: hypothetical protein SIF-BLAST: ,,[gp215 [Mycobacterium phage Bxz1] ],,NP_818265,100.0,1.05306E-104 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 223- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 126759 - 127028
  /gene="224"
  /product="gp224"
  /function="hypothetical protein"
  /locus tag="Matsumoto_224"
    /note=Original Glimmer call @bp 126759 has strength 8.47; Genemark calls start at 126759
    /note=SSC: 126759-127028 CP: yes SCS: both ST: SS BLAST-Start: [gp216 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.55445E-59 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.552, -4.0338999058337315, no F: hypothetical protein SIF-BLAST: ,,[gp216 [Mycobacterium phage Bxz1] ],,NP_818266,100.0,4.55445E-59 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 224- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 127085 - 127420
  /gene="225"
  /product="gp225"
  /function="hypothetical protein"
  /locus tag="Matsumoto_225"
    /note=Original Glimmer call @bp 127085 has strength 6.38; Genemark calls start at 127085
    /note=SSC: 127085-127420 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_222 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 7.72771E-75 GAP: 56 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.494, -3.979581593363423, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_222 [Mycobacterium phage ScottMcG] ],,YP_002224219,100.0,7.72771E-75 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 225- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 127499 - 127852
  /gene="226"
  /product="gp226"
  /function="hypothetical protein"
  /locus tag="Matsumoto_226"
    /note=Original Glimmer call @bp 127499 has strength 4.68; Genemark calls start at 127499
    /note=SSC: 127499-127852 CP: yes SCS: both ST: SS BLAST-Start: [gp218 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.05625E-78 GAP: 78 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.196, -4.6033671133628555, no F: hypothetical protein SIF-BLAST: ,,[gp218 [Mycobacterium phage Bxz1] ],,NP_818268,100.0,7.05625E-78 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 226- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. transmembrane region is supported by Deep TMHMM

CDS 127803 - 128123
  /gene="227"
  /product="gp227"
  /function="hypothetical protein"
  /locus tag="Matsumoto_227"
    /note=Original Glimmer call @bp 127803 has strength 7.19; Genemark calls start at 127902
    /note=SSC: 127803-128123 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein M182_gp122 [Mycobacterium phage Astraea] ],,NCBI, q1:s1 100.0% 5.87484E-69 GAP: -50 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.843, -5.056409918993686, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein M182_gp122 [Mycobacterium phage Astraea] ],,YP_008061688,100.0,5.87484E-69 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 227- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 128608 - 130266
  /gene="228"
  /product="gp228"
  /function="Ro-like RNA binding protein"
  /locus tag="Matsumoto_228"
    /note=Original Glimmer call @bp 128608 has strength 15.86; Genemark calls start at 128608
    /note=SSC: 128608-130266 CP: yes SCS: both ST: SS BLAST-Start: [RNA-binding protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 484 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.809, -3.0478325568523097, yes F: Ro-like RNA binding protein SIF-BLAST: ,,[RNA-binding protein [Mycobacterium phage Bxz1] ],,NP_818270,100.0,0.0 SIF-HHPRED: Ro sixty-related protein, RSR; alpha helical repeats, von Willebrand Factor A domain, beta-sheet, RNA BINDING PROTEIN; 1.89A {Deinococcus radiodurans} SCOP: c.62.1.0,,,2NVO_A,99.6377,100.0 SIF-Syn: syntenic to Napoleon13 gene 230- ro-like rna binding protein
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS complement (128514 - 128636)
  /gene="229"
  /product="gp229"
  /function="hypothetical protein"
  /locus tag="Matsumoto_229"
    /note=Original Glimmer call @bp 128636 has strength 5.3; Genemark calls start at 128609
    /note=SSC: 128636-128514 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_ROOTS515_235 [Mycobacterium phage Roots515] ],,NCBI, q1:s1 100.0% 6.11961E-20 GAP: 1990 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.599, -3.5490877672587735, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_ROOTS515_235 [Mycobacterium phage Roots515] ],,AYD81955,100.0,6.11961E-20 SIF-HHPRED:  SIF-Syn: syntenic to Roots515 gene 235- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E value makes HHpred poor support, deeptmhmm supports signal protein.

CDS 130627 - 130950
  /gene="230"
  /product="gp230"
  /function="hypothetical protein"
  /locus tag="Matsumoto_230"
    /note=Original Glimmer call @bp 130627 has strength 8.27; Genemark calls start at 130627
    /note=SSC: 130627-130950 CP: yes SCS: both ST: SS BLAST-Start: [gp221 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.82926E-71 GAP: 1990 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.551, -3.5707972674952195, no F: hypothetical protein SIF-BLAST: ,,[gp221 [Mycobacterium phage Bxz1] ],,NP_818271,100.0,7.82926E-71 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 231- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 130979 - 131218
  /gene="231"
  /product="gp231"
  /function="hypothetical protein"
  /locus tag="Matsumoto_231"
    /note=Original Glimmer call @bp 130979 has strength 12.13; Genemark calls start at 130979
    /note=SSC: 130979-131218 CP: yes SCS: both ST: SS BLAST-Start: [gp222 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 7.55706E-51 GAP: 28 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -2.970161406017234, yes F: hypothetical protein SIF-BLAST: ,,[gp222 [Mycobacterium phage Bxz1] ],,NP_818272,100.0,7.55706E-51 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 232- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 131265 - 131732
  /gene="232"
  /product="gp232"
  /function="hypothetical protein"
  /locus tag="Matsumoto_232"
    /note=Original Glimmer call @bp 131265 has strength 11.86; Genemark calls start at 131265
    /note=SSC: 131265-131732 CP: yes SCS: both ST: SS BLAST-Start: [gp223 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.36039E-106 GAP: 46 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.962, -2.707694805492614, yes F: hypothetical protein SIF-BLAST: ,,[gp223 [Mycobacterium phage Bxz1] ],,NP_818273,100.0,3.36039E-106 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 233- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 131732 - 132124
  /gene="233"
  /product="gp233"
  /function="hypothetical protein"
  /locus tag="Matsumoto_233"
    /note=Original Glimmer call @bp 131732 has strength 8.26; Genemark calls start at 131732
    /note=SSC: 131732-132124 CP: yes SCS: both ST: SS BLAST-Start: [gp224 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.79132E-91 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.059, -3.3503726477288405, yes F: hypothetical protein SIF-BLAST: ,,[gp224 [Mycobacterium phage Bxz1] ],,NP_818274,100.0,1.79132E-91 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 234- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 132124 - 132330
  /gene="234"
  /product="gp234"
  /function="hypothetical protein"
  /locus tag="Matsumoto_234"
    /note=Original Glimmer call @bp 132124 has strength 12.8; Genemark calls start at 132124
    /note=SSC: 132124-132330 CP: yes SCS: both ST: SS BLAST-Start: [gp225 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 3.19995E-41 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.397, -3.9718914447963414, yes F: hypothetical protein SIF-BLAST: ,,[gp225 [Mycobacterium phage Bxz1] ],,NP_818275,100.0,3.19995E-41 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 235- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 132327 - 132458
  /gene="235"
  /product="gp235"
  /function="hypothetical protein"
  /locus tag="Matsumoto_235"
    /note=Original Glimmer call @bp 132327 has strength 6.64; Genemark calls start at 132327
    /note=SSC: 132327-132458 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_231 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 3.83371E-24 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.753, -5.183665924498821, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_231 [Mycobacterium phage ScottMcG] ],,YP_002224228,100.0,3.83371E-24 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 236- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 132510 - 133238
  /gene="236"
  /product="gp236"
  /function="glycosyltransferase"
  /locus tag="Matsumoto_236"
    /note=Original Glimmer call @bp 132510 has strength 11.79; Genemark calls start at 132510
    /note=SSC: 132510-133238 CP: yes SCS: both ST: SS BLAST-Start: [glycosyltransferase [Mycobacterium phage Gizmo] ],,NCBI, q1:s1 100.0% 0.0 GAP: 51 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.285, -4.1462986041499, no F: glycosyltransferase SIF-BLAST: ,,[glycosyltransferase [Mycobacterium phage Gizmo] ],,YP_008061010,100.0,0.0 SIF-HHPRED: pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr).,,,cd02510,81.405,99.9 SIF-Syn: syntenic to Napoleon13 gene 237-  glycosyltransferase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 133226 - 133528
  /gene="237"
  /product="gp237"
  /function="hypothetical protein"
  /locus tag="Matsumoto_237"
    /note=Original Glimmer call @bp 133226 has strength 6.31; Genemark calls start at 133226
    /note=SSC: 133226-133528 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_233 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 2.3332E-58 GAP: -13 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.174, -4.299059343200891, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_233 [Mycobacterium phage ScottMcG] ],,YP_002224230,100.0,2.3332E-58 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 238- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. support for transmembrane region from Deep TMHMM, minor support towards membrane protein from some NCBI blast results

CDS 133525 - 134196
  /gene="238"
  /product="gp238"
  /function="glycosyltransferase"
  /locus tag="Matsumoto_238"
    /note=Original Glimmer call @bp 133525 has strength 15.2; Genemark calls start at 133525
    /note=SSC: 133525-134196 CP: yes SCS: both ST: SS BLAST-Start: [galactosyl transferase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 9.4092E-165 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.483, -3.790975366313636, yes F: glycosyltransferase SIF-BLAST: ,,[galactosyl transferase [Mycobacterium phage Bxz1] ],,NP_818278,100.0,9.4092E-165 SIF-HHPRED: CESA_CelA_like; CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to  Agrobacterium tumefaciens CelA and  Gluconacetobacter xylinus BscA.,,,cd06421,97.3094,99.9 SIF-Syn: syntenic to Napoleon13 gene 239-  glycosyltransferase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 134186 - 134902
  /gene="239"
  /product="gp239"
  /function="glycosyltransferase"
  /locus tag="Matsumoto_239"
    /note=Original Glimmer call @bp 134219 has strength 13.54; Genemark calls start at 134186
    /note=SSC: 134186-134902 CP: yes SCS: both-gm ST: SS BLAST-Start: [galactosyl transferase [Mycobacterium phage ArcherS7] ],,NCBI, q1:s1 100.0% 1.88266E-175 GAP: -11 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.508, -4.698795016966896, yes F: glycosyltransferase SIF-BLAST: ,,[galactosyl transferase [Mycobacterium phage ArcherS7] ],,YP_008061471,100.0,1.88266E-175 SIF-HHPRED: CESA_CelA_like; CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to  Agrobacterium tumefaciens CelA and  Gluconacetobacter xylinus BscA.,,,cd06421,81.9328,99.9 SIF-Syn: syntenic to Napoleon13 gene 240-  glycosyltransferase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 134899 - 135201
  /gene="240"
  /product="gp240"
  /function="PnuC-like Nicotinamide riboside transporter"
  /locus tag="Matsumoto_240"
    /note=Original Glimmer call @bp 134899 has strength 6.14; Genemark calls start at 134899
    /note=SSC: 134899-135201 CP: yes SCS: both ST: SS BLAST-Start: [gp230 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.12133E-66 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.13, -4.4713484557894425, no F: PnuC-like Nicotinamide riboside transporter SIF-BLAST: ,,[gp230 [Mycobacterium phage Bxz1] ],,NP_818280,100.0,4.12133E-66 SIF-HHPRED: NMN_transporter ; Nicotinamide mononucleotide transporter,,,PF04973.16,94.0,99.6 SIF-Syn: syntenic to Napoleon13 gene 241-  pnuc-like nicotinamide  riboside transporter
    /note=function supported by Phagesdb, function frequency, and NCBI blast, Deep TMHMM supports alpha TMM protein

CDS 135198 - 135860
  /gene="241"
  /product="gp241"
  /function="glycosyltransferase"
  /locus tag="Matsumoto_241"
    /note=Original Glimmer call @bp 135198 has strength 11.0; Genemark calls start at 135198
    /note=SSC: 135198-135860 CP: yes SCS: both ST: SS BLAST-Start: [glucosyltransferase [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 5.47824E-160 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.905, -2.9063687850157054, yes F: glycosyltransferase SIF-BLAST: ,,[glucosyltransferase [Mycobacterium phage Bxz1] ],,NP_818281,100.0,5.47824E-160 SIF-HHPRED: Glyco_transf_25 ; Glycosyltransferase family 25 (LPS biosynthesis protein),,,PF01755.21,65.9091,99.7 SIF-Syn: syntenic to Napoleon13 gene 242-  glycosyltransferase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 135924 - 139379
  /gene="242"
  /product="gp242"
  /function="hypothetical protein"
  /locus tag="Matsumoto_242"
    /note=Original Glimmer call @bp 135924 has strength 15.48; Genemark calls start at 135987
    /note=SSC: 135924-139379 CP: yes SCS: both-gl ST: SS BLAST-Start: [virion structural protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 63 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.2763497933341483, yes F: hypothetical protein SIF-BLAST: ,,[virion structural protein [Mycobacterium phage Bxz1] ],,NP_818282,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 243- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. NCBI Blast supports virion structural protein, more evidence needed for function call

CDS 139419 - 140813
  /gene="243"
  /product="gp243"
  /function="hypothetical protein"
  /locus tag="Matsumoto_243"
    /note=Original Glimmer call @bp 139419 has strength 17.28; Genemark calls start at 139419
    /note=SSC: 139419-140813 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_239 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: 39 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.992, -2.9334385989924945, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_239 [Mycobacterium phage ScottMcG] ],,YP_002224236,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 244- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support

CDS 140824 - 141594
  /gene="244"
  /product="gp244"
  /function="hypothetical protein"
  /locus tag="Matsumoto_244"
    /note=Original Glimmer call @bp 140824 has strength 19.35; Genemark calls start at 140824
    /note=SSC: 140824-141594 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Mycobacterium phage Quasimodo] ],,NCBI, q1:s1 100.0% 0.0 GAP: 10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -2.253486910374644, yes F: hypothetical protein SIF-BLAST: ,,[minor tail protein [Mycobacterium phage Quasimodo] ],,YP_010058541,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 245- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. NCBI Blast supports minor tail protein, more evidence needed for function call

CDS 141607 - 142362
  /gene="245"
  /product="gp245"
  /function="hypothetical protein"
  /locus tag="Matsumoto_245"
    /note=Original Glimmer call @bp 141607 has strength 19.57; Genemark calls start at 141607
    /note=SSC: 141607-142362 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.138, -2.2763497933341483, yes F: hypothetical protein SIF-BLAST: ,,[minor tail protein [Mycobacterium phage Bxz1] ],,NP_818285,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 246- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. NCBI Blast supports minor tail protein, more evidence needed for function call

CDS 142401 - 143831
  /gene="246"
  /product="gp246"
  /function="lysin A"
  /locus tag="Matsumoto_246"
    /note=Original Glimmer call @bp 142401 has strength 10.99; Genemark calls start at 142401
    /note=SSC: 142401-143831 CP: yes SCS: both ST: SS BLAST-Start: [endolysin [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 0.0 GAP: 38 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.149, -2.3335289980954053, no F: lysin A SIF-BLAST: ,,[endolysin [Mycobacterium phage Bxz1] ],,NP_818286,100.0,0.0 SIF-HHPRED: N-acetylmuramoyl-L-alanine amidase amiD; ZINC AMIDASE, PGRP, Peptidoglycan Recognizing Protein, AmpD, N-ACETYLMURAMYL-L-ALANINE AMIDASE, Cell wall biogenesis/degradation, Hydrolase, Lipoprotein, Membrane, Metal-binding; HET: GOL, AH0; 1.75A {Escherichia coli},,,3D2Y_A,32.9832,99.3 SIF-Syn: syntenic to Napoleon13 gene 247- Lysin A
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 143828 - 144238
  /gene="247"
  /product="gp247"
  /function="holin"
  /locus tag="Matsumoto_247"
    /note=Original Glimmer call @bp 143828 has strength 16.63; Genemark calls start at 143828
    /note=SSC: 143828-144238 CP: yes SCS: both ST: SS BLAST-Start: [holin [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.63594E-88 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.983, -2.7423981586358774, yes F: holin SIF-BLAST: ,,[holin [Mycobacterium phage Bxz1] ],,NP_818287,100.0,4.63594E-88 SIF-HHPRED: Phage_holin_7_1 ; Mycobacterial 2 TMS Phage Holin (M2 Hol) Family,,,PF16081.9,97.0588,100.0 SIF-Syn: syntenic to Zeenon gene 252- holin
    /note=function supported by Phagesdb, function frequency, and NCBI blast, Deep TMHMM calls alpha TMM

CDS 144235 - 145263
  /gene="248"
  /product="gp248"
  /function="lysin B"
  /locus tag="Matsumoto_248"
    /note=Original Glimmer call @bp 144235 has strength 13.64; Genemark calls start at 144235
    /note=SSC: 144235-145263 CP: yes SCS: both ST: SS BLAST-Start: [gp241 [Mycobacterium phage Rizal] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.491, -6.561440757437232, no F: lysin B SIF-BLAST: ,,[gp241 [Mycobacterium phage Rizal] ],,YP_002224904,100.0,0.0 SIF-HHPRED: Gene 12 protein; alpha/beta sandwich, CELL ADHESION; 2.0A {Mycobacterium phage D29},,,3HC7_A,71.9298,100.0 SIF-Syn: syntenic to Napoleon13 gene 249- Lysin B
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 145266 - 148289
  /gene="249"
  /product="gp249"
  /function="terminase"
  /locus tag="Matsumoto_249"
    /note=Original Glimmer call @bp 145266 has strength 11.41; Genemark calls start at 145266
    /note=SSC: 145266-148289 CP: yes SCS: both ST: SS BLAST-Start: [gp242 [Mycobacterium phage Catera] ],,NCBI, q1:s1 100.0% 0.0 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.599, -3.4080892535965868, no F: terminase SIF-BLAST: ,,[gp242 [Mycobacterium phage Catera] ],,YP_656220,100.0,0.0 SIF-HHPRED: Large subunit terminase; large terminase, VIRAL PROTEIN; 2.2A {Deep-sea thermophilic phage D6E},,,5OE8_A,85.3029,99.8 SIF-Syn: syntenic to Napoleon13 gene 250- Terminase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 148362 - 148490
  /gene="250"
  /product="gp250"
  /function="hypothetical protein"
  /locus tag="Matsumoto_250"
    /note=Original Glimmer call @bp 148362 has strength 14.03; Genemark calls start at 148362
    /note=SSC: 148362-148490 CP: yes SCS: both ST: SS BLAST-Start: [gp240 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 4.03407E-21 GAP: 72 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.394, -3.9166971242758706, yes F: hypothetical protein SIF-BLAST: ,,[gp240 [Mycobacterium phage Bxz1] ],,NP_818290,100.0,4.03407E-21 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 251- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support. support for transmembrane region from Deep TMHMM.

CDS 148511 - 148804
  /gene="251"
  /product="gp251"
  /function="hypothetical protein"
  /locus tag="Matsumoto_251"
    /note=Original Glimmer call @bp 148511 has strength 12.73; Genemark calls start at 148511
    /note=SSC: 148511-148804 CP: yes SCS: both ST: NI BLAST-Start: [hypothetical protein SCOTTMCG_247 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 4.28724E-64 GAP: 20 bp gap LO: no RBS: Kibler 6, Karlin Medium, 0.586, -7.773049772744002, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_247 [Mycobacterium phage ScottMcG] ],,YP_002224244,100.0,4.28724E-64 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 252- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.. not a TMM protein

CDS 148801 - 149046
  /gene="252"
  /product="gp252"
  /function="hypothetical protein"
  /locus tag="Matsumoto_252"
    /note=Original Glimmer call @bp 148801 has strength 12.52; Genemark calls start at 148801
    /note=SSC: 148801-149046 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_248 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 1.68557E-50 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.156, -5.243579400788688, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_248 [Mycobacterium phage ScottMcG] ],,YP_002224245,100.0,1.68557E-50 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 253- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.

CDS 149043 - 149264
  /gene="253"
  /product="gp253"
  /function="hypothetical protein"
  /locus tag="Matsumoto_253"
    /note=Original Glimmer call @bp 149043 has strength 11.56; Genemark calls start at 149043
    /note=SSC: 149043-149264 CP: yes SCS: both ST: SS BLAST-Start: [gp243 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 1.0732E-45 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.811, -3.0425830684175623, yes F: hypothetical protein SIF-BLAST: ,,[gp243 [Mycobacterium phage Bxz1] ],,NP_818293,100.0,1.0732E-45 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 254- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.

CDS 149295 - 149816
  /gene="254"
  /product="gp254"
  /function="polynucleotide kinase"
  /locus tag="Matsumoto_254"
    /note=Original Glimmer call @bp 149295 has strength 18.73; Genemark calls start at 149295
    /note=SSC: 149295-149816 CP: yes SCS: both ST: SS BLAST-Start: [polynucleotide kinase [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 5.46408E-123 GAP: 30 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.811, -3.3136498407041004, yes F: polynucleotide kinase SIF-BLAST: ,,[polynucleotide kinase [Mycobacterium phage ScottMcG] ],,YP_002224247,100.0,5.46408E-123 SIF-HHPRED: Polynucleotide kinase; Phosphatase, BeF3-bound, Beryllium, Pnkp, TRANSFERASE, HYDROLASE; HET: BFD; 2.3A {Enterobacteria phage T4},,,5UJ0_A,86.7052,99.8 SIF-Syn: syntenic to Napoleon13 gene 255- polynucleotide kinase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 149876 - 150139
  /gene="255"
  /product="gp255"
  /function="hypothetical protein"
  /locus tag="Matsumoto_255"
    /note=Original Glimmer call @bp 149876 has strength 9.53; Genemark calls start at 149897
    /note=SSC: 149876-150139 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_251 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 2.93944E-58 GAP: 59 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.578, -3.513874779476501, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_251 [Mycobacterium phage ScottMcG] ],,YP_002224248,100.0,2.93944E-58 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 256- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.

CDS 150136 - 151209
  /gene="256"
  /product="gp256"
  /function="serine/threonine kinase"
  /locus tag="Matsumoto_256"
    /note=Original Glimmer call @bp 150136 has strength 13.47; Genemark calls start at 150136
    /note=SSC: 150136-151209 CP: yes SCS: both ST: SS BLAST-Start: [kinase [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.759, -3.7234890726758456, yes F: serine/threonine kinase SIF-BLAST: ,,[kinase [Mycobacterium phage ScottMcG] ],,YP_002224249,99.7199,0.0 SIF-HHPRED: Mitotic checkpoint serine/threonine-protein kinase BUB1; BUB1, kinase inhibitor, transferase; HET: SEP, CVQ; 2.0A {Homo sapiens},,,6F7B_A,74.2297,100.0 SIF-Syn: syntenic to Napoleon13 gene 257- serine/threonine kinase
    /note=function supported by Phagesdb, function frequency, and NCBI blast, not a TMM protein

CDS 151245 - 152264
  /gene="257"
  /product="gp257"
  /function="hypothetical protein"
  /locus tag="Matsumoto_257"
    /note=Original Glimmer call @bp 151245 has strength 20.34; Genemark calls start at 151245
    /note=SSC: 151245-152264 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_253 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: 35 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.292, -1.953940808934884, yes F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_253 [Mycobacterium phage ScottMcG] ],,YP_002224250,100.0,0.0 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 258- not informative for function
    /note=NKF supported by Blast, and PhagesDB. Low coverage value makes HHpred poor support.

CDS 152261 - 152527
  /gene="258"
  /product="gp258"
  /function="hypothetical protein"
  /locus tag="Matsumoto_258"
    /note=Original Glimmer call @bp 152261 has strength 9.0; Genemark calls start at 152261
    /note=SSC: 152261-152527 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SCOTTMCG_254 [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 2.43703E-57 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.158, -4.98464302562818, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SCOTTMCG_254 [Mycobacterium phage ScottMcG] ],,YP_002224251,100.0,2.43703E-57 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 259- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.

CDS 152524 - 153852
  /gene="259"
  /product="gp259"
  /function="adenylosuccinate synthetase PurA-like"
  /locus tag="Matsumoto_259"
    /note=Original Glimmer call @bp 152524 has strength 15.57; Genemark calls start at 152524
    /note=SSC: 152524-153852 CP: yes SCS: both ST: SS BLAST-Start: [2-aminooxy adenylosuccinate synthetase [Mycobacterium phage ScottMcG] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.147, -4.497860114175419, no F: adenylosuccinate synthetase PurA-like SIF-BLAST: ,,[2-aminooxy adenylosuccinate synthetase [Mycobacterium phage ScottMcG] ],,YP_002224252,100.0,0.0 SIF-HHPRED: Adenylosuccinate synthetase; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy; HET: AMP, MLI, MSE, EDO; 1.821A {Bacillus anthracis} SCOP: l.1.1.1, c.37.1.0,,,4M9D_B,99.095,100.0 SIF-Syn: syntenic to Napoleon13 gene 260- PurA-like adenylosuccinate synthetase
    /note=function supported by Phagesdb, function frequency, hhpred, and NCBI blast, not a TMM protein

CDS 153935 - 154171
  /gene="260"
  /product="gp260"
  /function="hypothetical protein"
  /locus tag="Matsumoto_260"
    /note=Original Glimmer call @bp 153935 has strength 12.4; Genemark calls start at 153935
    /note=SSC: 153935-154171 CP: yes SCS: both ST: SS BLAST-Start: [gp251 [Mycobacterium phage Bxz1] ],,NCBI, q1:s1 100.0% 2.37445E-45 GAP: 82 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.776, -5.2756940258553, no F: hypothetical protein SIF-BLAST: ,,[gp251 [Mycobacterium phage Bxz1] ],,NP_818301,100.0,2.37445E-45 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 262- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.

CDS 154168 - 154329
  /gene="261"
  /product="gp261"
  /function="hypothetical protein"
  /locus tag="Matsumoto_261"
    /note=Original Glimmer call @bp 154171 has strength 8.65; Genemark calls start at 154168
    /note=SSC: 154168-154329 CP: yes SCS: both-gm ST: SS BLAST-Start: [hypothetical protein SEA_CHAYLAJR_264 [Mycobacterium phage ChaylaJr] ],,NCBI, q1:s1 100.0% 2.41187E-29 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.895, -4.963787326180191, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein SEA_CHAYLAJR_264 [Mycobacterium phage ChaylaJr] ],,QNJ58855,100.0,2.41187E-29 SIF-HHPRED:  SIF-Syn: syntenic to Napoleon13 gene 263- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, and low coverage values makes HHpred poor support, Deep TMHMM supports SP

CDS join(154424. .154995;1. .4)
  /gene="262"
  /product="gp262"
  /function="hypothetical protein"
  /locus tag="Matsumoto_262"
    /note=Original Glimmer call @bp 154424 has strength 10.86
    /note=SSC: 154424-4 CP: yes SCS: glimmer ST: SS BLAST-Start: [hypothetical protein ET08_253 [Mycobacterium phage ET08] ],,NCBI, q1:s1 100.0% 1.73146E-140 GAP: 94 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.551, -4.609715333525589, no F: hypothetical protein SIF-BLAST: ,,[hypothetical protein ET08_253 [Mycobacterium phage ET08] ],,YP_003347683,100.0,1.73146E-140 SIF-HHPRED:  SIF-Syn: syntenic to Ngannou gene 261- not informative for function
    /note=NKF supported by Blast, and PhagesDB. High E, low coverage value makes HHpred poor support.