CDS 1 - 468
    /note=Phagesdb Function: hits with cluster AO2 (13 counts) at 22% frequency and AO1 (7 counts ) at 12% frequency
    /note=Phagesdb BLAST: top hits with Abba and Jkerns, e-value significant, call helix-turn-helix DNA-binding domain protein	
    /note=HHPRED: top hit small terminase subunit, e-value not significant 
    /note=NCBI BLAST: top hits with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 461 - 1909
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 24% frequency and AO2 (11 counts) at 14% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called terminase
    /note=HHPRED: top hit small terminase subunit; e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 1951 - 3579
    /note=Phagesdb Function: hits with cluster CZ2 (23 counts) at 26% frequency and AO2 (17 counts) at 19% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called portal protein
    /note=HHPRED: top hit Abba; e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 3572 - 5608
    /note=Phagesdb Function: hits with cluster AO2 (17 counts) at 21% frequency, A2 (19 counts) at 23% frequency, and AO1 (7 counts) at 9% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called capsid maturation protease	HHPRED: top hit Abba; e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 5605 - 5910
    /note=Phagesdb Function: unknown hits with clusters, counts, and frequencies 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 	
    /note=HHPRED: immunity protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene
    /note=FINAL CALL: Calling this gene

CDS 5972 - 7126
    /note=Phagesdb Function: hits with cluster AO2 (19 counts) at 22% frequency, AO3 (1 count) at 1% frequency, and CV (23 counts) at 27% frequency
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; called scaffolding protein	
    /note=HHPRED: top hit with Abba, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 7171 - 7563
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 21% frequency and DB (17 counts) at 15% frequency 
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; called scaffolding protein	
    /note=HHPRED: top hit with Abba, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 7603 - 8493
    /note=Phagesdb Function: hits with cluster AR (20 counts) at 24% frequency and AO2 (17 counts) at 20% frequency 
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; major capsid protein
    /note=HHPRED: top hit with Abba, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 8512 - 8988
    /note=Phagesdb Function: hits with cluster B5 (3 counts) at 43% frequency and FC (2 counts) at 29% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown  
    /note=HHPRED: top hit with Helicobacter pylori: Type IV secretion system apparatus protein CagY, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 8992 - 9498
    /note=Phagesdb Function: hits with cluster EA2 (11 counts) at 41% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown  
    /note=HHPRED: top hit with Pseudomonas phage JBD30, DUF1320: domain-containing protein, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 9503 - 9970
    /note=Phagesdb Function: hits with cluster AR (18 counts) at 62% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown  
    /note=HHPRED: top hit Phage_tail_S, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 9970 - 10587
    /note=Phagesdb Function: hits with cluster AR (18 counts) at 62% frequency and AO2 (1 counts) at 20% frequency
    /note=Phagesdb BLAST: top hit with Abba and BossLady; e-value significant; called function unknown  
    /note=HHPRED: top hit with Dinoroseobacter phage vB_DshS-R4C: Terminator protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 10650 - 10883
    /note=Phagesdb Function: hits with cluster DR (1 count) at 100% frequency 
    /note=Phagesdb BLAST: top hit with Abba and Sicarius2; e-value significant; called function unknown  
    /note=HHPRED: top hit with protein of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon:  changed start to match 1:1 with Abba

CDS 10889 - 12343
    /note=Phagesdb Function: hits with cluster AR (20 counts) at 28% frequency and AO2 (17 counts) at 24% frequency 
    /note=Phagesdb BLAST: top hit with Abba and Sicarius2; e-value significant; called tail sheath protein
    /note=HHPRED:  top hit with Halogeometricum borinquense DSM 1155: Phage tail sheath protein, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value not significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 12359 - 12778
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 27% frequency and AO2 (17 counts) at 24% frequency 
    /note=Phagesdb BLAST: top hit with Abba and Sicarius2; e-value not significant; called tail sheath protein
    /note=HHPRED: top hit with Halogeometricum borinquense DSM 1155: Phage tail sheath protein, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value not significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 12952 - 13509
    /note=Phagesdb Function: hits with cluster DQ (14 counts) at 45% frequency and FH (5 counts) at 16% frequency, and AO, AO1, AND AO2 that have (1 count) at 3% frequency 
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; called unknown function and tail assembly chaperone
    /note=HHPRED: top hit with unclassified Caudoviricetes: tube; tail, virus, viral protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:19 ratio with Abba to support the start position of this gene

CDS 13554 - 13694
    /note=Phagesdb Function: hits with cluster DQ (1 count) at 100% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called unknown function
    /note=HHPRED: top hit with Tetrahymena thermophila: motor protein, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 13716 - 16340
    /note=Phagesdb Function: hits with cluster AK (62 counts) at 66% frequency and AO2 (17 counts) at 18% frequency
    /note=Phagesdb BLAST: top hit with Vitus_Draft, Sicarius2, and Wyborn; e-value not significant; called unknown function and tape measure protein
    /note=HHPRED: top hit with Clostridioides difficile: Tape measure protein, e-value significant
    /note=NCBI BLAST: top hit with Sicarius2 and Wyborn, e-value significant
    /note=Start codon: Edited to match closer to starting positions on NCBI BLAST hits

CDS complement (13544 - 13870)
    /note=Phagesdb Function: hits with no known clusters and counts at frequencies  
    /note=Phagesdb BLAST: top hit with Trogglehumper and Klevey; e-value not significant; called unknown function and minor tail protein
    /note=HHPRED: top hit with Phage-encoded virulence factor, e-value not significant
    /note=NCBI BLAST: no known top hits and e-values
    /note=
    /note=DELETE

CDS 16341 - 17003
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 24% frequency and AO2 (13 counts) at 16% frequency
    /note=Phagesdb BLAST: top hit with Abba and Beans; e-value significant; called LysM-like endolysin and LysM-like peptidoglycan-binding protein	
    /note=HHPRED: top hit with Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77): PROTEIN TRANSPORT, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene
    /note=
    /note=LysM conserved domain database hit along with NCBI blast hits

CDS 17007 - 18326
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 25% frequency and AO2 (17 counts) at 13% frequency
    /note=Phagesdb BLAST: top hit with Abba and Vibaki; e-value significant; called minor tail protein	
    /note=HHPRED: top hit with Clostridioides difficile: Phage tail-like, bacteriocin, baseplate, pre-contraction, VIRUS LIKE PARTICLE, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 18327 - 18728
    /note=Phagesdb Function: hits with cluster EE (8 counts) at 38% frequency 
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; called function unknown 
    /note=HHPRED: top hit with Probable peptidoglycan endopeptidase LytE: ANTIMICROBIAL PROTEIN-INHIBITOR COMPLEX, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 18733 - 20739
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 23% frequency and AO2 (17 counts) at 21% frequency 
    /note=Phagesdb BLAST: top hit with Sicarius2 and Hirko; e-value significant; called minor tail protein	 
    /note=HHPRED: top hit with  Pseudomonas aeruginosa: Tail fiber protein; R-type pyocin, contractile injection system, receptor-binding protein, VIRAL PROTEIN, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 20794 - 22545
    /note=Phagesdb Function: hits with cluster BD2 (19 counts) at 23% frequency and AR (19 counts) at 23% frequency 
    /note=Phagesdb BLAST: top hit with Sicarius2 and Sicarius2; e-value significant; called minor tail protein	 
    /note=HHPRED: top hit with Ralstonia phage GP4: putative tail fiber protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 22545 - 22817
    /note=Phagesdb Function: unknown hits with clusters, counts, and frequencies 
    /note=Phagesdb BLAST: top hit with Abba and Sicarius2; e-value significant; called function unknown 	
    /note=HHPRED: Protein of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 22814 - 23020
    /note=Phagesdb Function: hits with cluster AY (1 count) at 50% frequency and BE1 (1 count) at 50% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 	
    /note=HHPRED: Protein of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 23032 - 23316
    /note=Phagesdb Function: hits with cluster AO2 (14 counts) at 88% frequency and AO3 (1 count) at 6% frequency
    /note=Phagesdb BLAST: top hit with Abba and Wyborn; e-value significant; called holin 	
    /note=HHPRED: Family of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with Abba and Wyborn, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 23313 - 24266
    /note=Phagesdb Function: hits with cluster AZ1 (21 counts) at 33% frequency and AY (9 counts) at 14% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called lysin A, protease M23 domain 	
    /note=HHPRED: top hit with Peptidase M23; membrane protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 24269 - 24643
    /note=Phagesdb Function: hits with cluster AK (49 counts) at 92% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 	
    /note=HHPRED: top hit with Bacteriophage A118-like holin; membrane protein, e-value not significant
    /note=NCBI BLAST: top hit with Abba and Sicarius2, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene
    /note=
    /note=3 membrane domain hits with DeepTMHMM; confirmed by SOSUI

CDS 24685 - 25011
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 23% frequency and AO2 (17 counts) at 21% frequency
    /note=Phagesdb BLAST: top hit with Sicarius2 and Abba; e-value significant; called baseplate wedge protein	
    /note=HHPRED: top hit with sheath initiator; baseplate, viral protein, e-value significant
    /note=NCBI BLAST: top hit with Vibaki and Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 25008 - 26138
    /note=Phagesdb Function: hits with cluster AR (19 counts) at 25% frequency and AO2 (17 counts) at 22% frequency
    /note=Phagesdb BLAST: top hit with Abba and EastWest; e-value significant; called baseplate wedge protein	
    /note=HHPRED: top hit with wedge protein gp31, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 26138 - 27400
    /note=Phagesdb Function: hits with cluster AK (12 counts) at 22% frequency and AO2 (10 counts) at 18% frequency
    /note=Phagesdb BLAST: top hit with Abba and Wyborn; e-value significant; called minor tail protein	
    /note=HHPRED: top hit with baseplate wedge protein, gp17; Myoviridae, Phage, Baseplate complex, e-value significant
    /note=NCBI BLAST: top hit with Abba and Wyborn, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 27655 - 27780
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 	
    /note=HHPRED: top hit with Inovirus_G7P_2 ; Tail virion protein G7P, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene
    /note=
    /note=one large membrane domain hit on DeepTMHMM; confirmed by SOSUI

CDS 27783 - 28817
    /note=Phagesdb Function: hits with cluster N (19 counts) at 22% frequency and AO2 (17 counts) at 20% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called exonuclease
    /note=HHPRED: top hit with Exonuclease; Type II Restriction Endonuclease Fold, 5`-3` dsDNA exonuclease, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 28820 - 29710
    /note=Phagesdb Function: hits with cluster N (34 counts) at 38% frequency and AO2 (17 counts) at 19% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called RecT-like DNA pairing protein
    /note=HHPRED: top hit with RecT; DNA Recombination, DNA Annealing, RecT; DNA BINDING PROTEIN, e-value significant
    /note=NCBI BLAST: top hit with Abba and EastWest, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 29713 - 30264
    /note=Phagesdb Function: hits with cluster AR (13 counts) at 15% frequency and AO2 (12 counts) at 14% frequency
    /note=Phagesdb BLAST: top hit with Abba and Kovu; e-value significant; called SSB protein
    /note=HHPRED: top hit with single-stranded DNA-binding protein, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 30461 - 30679
    /note=Phagesdb Function: hits with cluster AO2 (13 counts) at 16% frequency and AW (9 counts) at 11% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called helix-turn-helix DNA-binding domain protein
    /note=HHPRED: top hit with protein of unknown function, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 30676 - 31203
    /note=Phagesdb Function: hits with cluster AO2 (11 counts) at 24% frequency and AO1 (7 counts) at 16% frequency 
    /note=Phagesdb BLAST: top hit with Abba and LeeroyJ; e-value significant; called helix-turn-helix DNA-binding domain protein
    /note=HHPRED: top hit with RepA_N; Replication initiator protein A (RepA) N-terminus, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 31200 - 31355
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with JanetJ; e-value significant; called function unknown 	
    /note=HHPRED: top hit with DNA-(apurinic or apyrimidinic site) lyase, e-value not significant
    /note=NCBI BLAST: top hit with hypothetical protein SEA_BOLT007_68, e-value not significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 31585 - 32184
    /note=Phagesdb Function: hits with cluster Q (20 counts) at 71% frequency and BN (5 counts) at 18% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown
    /note=HHPRED: top hit with Family of unknown function (DUF6400), e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant

CDS 32177 - 32527
    /note=Phagesdb Function: hits with cluster P1 (19 counts) at 58% frequency and P1 (5 counts) at 15% frequency 
    /note=Phagesdb BLAST: top hit with EastWest and Pippa; e-value significant; called function unknown
    /note=HHPRED: top hit with akirin; small, highly conserved eumetazoan nuclear proteins that play a role in immune response and tumorigenesis, e-value not significant
    /note=NCBI BLAST: top hit with hypothetical protein [Arthrobacter sp.], e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Arthrobacter sp. to support the start position of this gene

CDS 32524 - 33099
    /note=Phagesdb Function: hits with cluster AO2 (17 counts) at 26% frequency and AO1 (7 counts) at 11% frequency 
    /note=Phagesdb BLAST: top hit with Abba and Wyborn; e-value significant; called RusA-like resolvase	
    /note=HHPRED: top hit with RusA ; Endodeoxyribonuclease RusA, e-value significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 33147 - 33341
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba and Vibaki; e-value significant; called function unknown 	
    /note=HHPRED: top hit with EDR4-like_1st ; Enhanced disease resistance 4-like, N-terminal domain, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 33403 - 33720
    /note=Phagesdb Function: hits with cluster CQ1 (12 counts) at 100% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 	
    /note=HHPRED: top hit with Gas vesicle synthesis protein GvpO, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 33725 - 34474
    /note=Phagesdb Function: hits with cluster B1 (64 counts) at 73% frequency 
    /note=Phagesdb BLAST: top hit with Amelia; e-value significant; called DNA methylase
    /note=HHPRED: top hit with DNA (cytosine-5)-methyltransferase 3A; TRANSFERASE, TRANSFERASE-DNA complex, e-value not significant
    /note=NCBI BLAST: top hit with hypothetical protein [Pseudarthrobacter phenanthrenivorans], e-value significant
    /note=Start codon: changed start to align 1:1 with NCBI hits

CDS 34508 - 35239
    /note=Phagesdb Function: hits with cluster AR (15 counts) at 65% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins., e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon: original & unedited; with a target from to: query from, 1:1 ratio with Abba to support the start position of this gene

CDS 35428 - 35658
    /note=Phagesdb Function: hits with cluster AP4 (2 counts) at 33% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with DUF6763; Family of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant
    /note=Start codon:

CDS 35655 - 35942
    /note=Phagesdb Function: hits with cluster AR (2 counts) at 50% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with RPLX; RIBOSOME FOR PROTEIN SYNTHESIS, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant

CDS 35939 - 36103
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with no known phages and no e-values given 
    /note=HHPRED: top hit with Phenylphosphate carboxylase gamma subunit, e-value not significant
    /note=NCBI BLAST: top hit with no known phages and no e-values given

CDS 36100 - 36252
    /note=Phagesdb Function: hits with cluster CS2 (1 count) at 100% frequency  
    /note=Phagesdb BLAST: top hit with BirksAndSocks; e-value not significant; called function unknown 
    /note=HHPRED: top hit with PROTEIN (HOMEOBOX PROTEIN HOX-B1); DNA-BINDING PROTEIN- PROTEIN-DNA COMPLEX, e-value not significant
    /note=NCBI BLAST: top hit with hypothetical protein EDF61_104158 [Arthrobacter sp. JUb115], e-value significant

CDS 36225 - 36581
    /note=Phagesdb Function: top hits with cluster A5 (32 counts) at 64% frequency and cluster A3 (15 counts) at 30% frequency  
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with EDR4-like_1st ; Enhanced disease resistance 4-like- N-terminal domain, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 36571 - 37302
    /note=Phagesdb Function: top hits with cluster B1 (11 counts) at 79% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with SET_SMYD3; SET domain found in SET and MYND domain-containing protein 3 (SMYD3) and similar proteins, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 37329 - 37595
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Uncharacterized protein YaaQ, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant
    /note=Start: changed to align 1:1 with Abba

CDS 37670 - 38344
    /note=Phagesdb Function: top hits with cluster DV (27 counts) at 79% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Archaeal transcription regulator; Hyperthermophile, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant
    /note=Start: edited to align 1:1 with Abba

CDS 38405 - 38641
    /note=Phagesdb Function: top hits with cluster BN (1 count) at 100% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with GIY-YIG_COG1833; GIY-YIG domain of hypothetical proteins from archaea and their bacterial homologs, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 38902 - 39324
    /note=Phagesdb Function: top hits with cluster BN (16 counts) at 84% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with a.22.1.3 (A:) TAF(II)-135; (TAF(II)-130; hTAF4); histone fold domain, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 39317 - 39724
    /note=Phagesdb Function: top hits with cluster BN (25 counts) at 64% frequency and cluster BN (8 counts) at 21% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Alpha-glucosidase; TIM barrel; Carbohydrate/Sugar Binding; Hydrolase, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 39721 - 39984
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Exopolyphosphatase Ppx: Alpha and beta proteins (a/b), FOLD: Ribonuclease H-like motif- SUPFAM: Actin-like ATPase domain; FAM: Ppx/GppA phosphatase, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 39981 - 40106
    /note=Phagesdb Function: top hits with cluster AO1 (5 counts) at 83% frequency and cluster AO (1 count) at 17% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with DUF2774, Protein of unknown function; e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 40099 - 40935
    /note=Phagesdb Function: top hits with cluster AO1 (49 counts) at 71% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with DUF2774, Protein of unknown function; e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant
    /note=Start: does not align well with Abba, but not possible to make ORF longer

CDS 40928 - 41332
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 41307 - 41489
    /note=Phagesdb Function: top hits with cluster F1 (30 counts) at 83% frequency 
    /note=Phagesdb BLAST: top hit with EastWest; e-value not significant; called function unknown 
    /note=HHPRED: top hit with DUF5832 ; Family of unknown function, e-value not significant
    /note=NCBI BLAST: top hit with hypothetical protein [Spirillospora sp. NPDC050679]; e-value not significant

CDS 41486 - 41788
    /note=Phagesdb Function: top hits with cluster FL (1 count) at 50% frequency and cluster FO (1 count) at 50% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with d.222.1.1 (A:) Hypothetical protein HI0442, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 41815 - 41937
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Mth938-like; Mth938-like domain, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS 42042 - 42653
    /note=Phagesdb Function: top hits with cluster CV (10 counts) at 38% frequency and cluster EG (7 counts) at 27% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown 
    /note=HHPRED: top hit with Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA; tryptophan RNA-binding attenuation protein; transcription attenuation; antitermination; transcription factors; tryptophan biosynthesis regulation, e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS complement (42066 - 42158)
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: hits with no known cluster, e-values, and identified functions 
    /note=HHPRED: top hit with Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; e-value not significant
    /note=NCBI BLAST: top hit with no known cluster and their corresponding e-values

CDS 42650 - 43228
    /note=Phagesdb Function: top hits with cluster GA (8 counts) at 13% frequency and cluster AO2 (8 counts) at 13% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called ParB-like nuclease domain protein
    /note=HHPRED: top hit with ParB family protein; DNA-binding protein; Hydrolase, e-value significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS complement (43287 - 43577)
    /note=Phagesdb Function: hits with cluster AO2 (8 counts) at 11% frequency and EC (12 counts) at 17% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called helix-turn-helix DNA-binding domain protein
    /note=HHPRED: top hit with AlpA family phage regulatory protein; excisionase DNA BINDING PROTEIN, e-value not significant
    /note=NCBI BLAST: top hit with Abba, e-value significant

CDS complement (43611 - 44873)
    /note=Phagesdb Function: hits with cluster AR (18 counts) at 26% frequency and AY (11 counts) at 16% frequency 
    /note=Phagesdb BLAST: top hit with Abba and Wyborn; e-value significant; called DNA polymerase III sliding clamp
    /note=HHPRED: top hit with Beta sliding clamp {Escherichia coli}, e-value significant
    /note=NCBI BLAST: top hit with Abba and Wyborn, e-value significant

CDS complement (44907 - 45599)
    /note=Phagesdb Function: top hits with cluster K2 (6 counts) at 75% frequency
    /note=Phagesdb BLAST: top hit with BarretLemon; e-value not significant; called function unknown	
    /note=HHPRED: top hit with DAPX PROTEIN; LIPID BINDING PROTEIN--LIPOPROTEIN; e-value not significant
    /note=NCBI BLAST: top hit with no known cluster and their corresponding e-value

CDS complement (45698 - 46399)
    /note=Phagesdb Function: top hits with cluster B1 (90 counts) at 100% frequency
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown	
    /note=HHPRED: top hit with Protein bolA; stationary-phase, stress-induced, morphogene; e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS complement (46501 - 47502)
    /note=Phagesdb Function: hits with no known cluster at no known counts and frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown	
    /note=HHPRED: top hit with DUF932, Domain of unknown function; e-value significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

CDS complement (47572 - 48375)
    /note=Phagesdb Function: top hits with cluster DE3 (4 counts) at 36% frequency and BE3 (2 counts) at 18% frequency 
    /note=Phagesdb BLAST: top hit with Abba; e-value significant; called function unknown	
    /note=HHPRED: top hit with EDR4-like_1st ; Enhanced disease resistance 4-like, N-terminal domain; e-value not significant
    /note=NCBI BLAST: top hit with Abba; e-value significant

Genes added in gaps (Only added in the DNA Master Minimal file):
•	SEA_NOSTROMO_55 (38638-38847): hypothetical protein that hits with Abba

Deleted phams in the DNA MASTER minimal file (Genes not deleted in PECAAN):
•	Genes 19, 56, and 67 were removed as they overlapped with genes encoded on the top strand.