CDS 66 - 191 /note=RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like; Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S. CDS 188 - 463 /note=ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase); blood group synthase, glycosyltransferase, dual specificity, cis-AB mutant, transferase; HET: SO4, GOL, UDP, EDO; 1.07A {Homo sapiens} SCOP: l.1.1.1, c.68.1.9 CDS complement (649 - 816) /note=Putative thiol-disulfide oxidoreductase; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC; NMR {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1 CDS complement (949 - 2451) /note=DndB ; DNA-sulfur modification-associated CDS 2695 - 2907 /note=b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | CLASS: All beta proteins, FOLD: SH3-like barrel, SUPFAM: Translation proteins SH3-like domain, FAM: N-utilization substance G protein NusG, C-terminal domain CDS 3042 - 3386 /note=Uncharacterized protein AcrF1; anti-CRISPR proteins, Csy complex, Type I-F CRISPR/Cas system, IMMUNE SYSTEM-RNA complex;{Pseudomonas aeruginosa (strain UCBPP-PA14)} CDS 3445 - 3912 /note=NICKEL AND COBALT RESISTANCE PROTEIN CNRR; METAL BINDING PROTEIN, SENSOR PROTEIN, SIGNAL TRANSDUCTION; HET: PEG, PGE, GOL; 1.85A {CUPRIAVIDUS METALLIDURANS} CDS 3979 - 4332 /note=Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 2.14A {Candidatus Thorarchaeota archaeon SMTZ1-45} /note=probability 53.3 /note=coverage 21.3675 /note=hypothetical protein SEA_ATUIN_308 [Arthrobacter phage Atuin] >gb|WWQ87554.1| hypothetical protein SEA_ATUIN_8 [Arthrobacter phage Atuin] /note=identity 82.0513 /note=aligned 86.3248 CDS 4747 - 4980 /note=d.157.1.0 (A:) automated matches {Serratia marcescens [TaxId: 615]} | CLASS: Alpha and beta proteins (a+b), FOLD: Metallo-hydrolase/oxidoreductase, SUPFAM: Metallo-hydrolase/oxidoreductase, FAM: automated matches CDS 4990 - 5184 /note=PilZNR ; Flagellar protein YcgR CDS complement (4753 - 5187) /note=tau-AnmTx Ueq 12-1; PROTEIN, sea anemone, antimicrobial peptide, TRPA1 potentiator, membrane protein, toxin; NMR {Urticina eques} CDS 5264 - 5665 /note=Uncharacterized protein yjdK; RNase, biofilm, UNKNOWN FUNCTION; NMR {Escherichia coli} CDS 5747 - 5980 /note=-DUF7203 ; Family of unknown function (DUF7203) /note=-hypothetical protein SEA_ATUIN_12 [Arthrobacter phage Atuin] CDS 6059 - 6538 /note=-YlzJ ; YlzJ-like protein /note=-hypothetical protein SEA_ATUIN_13 [Arthrobacter phage Atuin] >gb|WWQ87565.1| hypothetical protein SEA_ATUIN_313 [Arthrobacter phage Atuin] CDS 6625 - 6906 /note=In the Host-trained gene mark the gene is at the ~6625 point and ends at 6906. there is a Z-score of 3.096, there is also a gap of 86 and NCBI blast came back with nothing after repeated reloads the same thing with the conserved domain data base. Through observation this is a Hypothetical protein because there is no significance in NCBI blast or Conserved domain data and the probability is not significant. PF09869.16 KH_DUF2096_C ; DUF2096 C-terminal KH-like domain has a probability of 72.4 and coverage of 41.9355 /note= /note=Starterator /note=Gene: Panchaali_16 Start: 6625, Stop: 6906, Start Num: 2 /note=Candidate Starts for Panchaali_16: /note=(1, 6592), (Start: 2 @6625 has 6 MA`s), (4, 6748), (6, 6895), CDS 6903 - 7103 /note=Glimmer and gene mark both have 6903 as start and the stop is 7103 the location has been verified in host trained gene mark and there is a gap of -4, there is a Z-score of 2.555. NCBI came up with something (down below) but concerned data base did not, HHPRED had 1K8R_B Protein kinase byr2; signal transduction, cancer, GTPase, ubiquitin fold, SIGNALING PROTEIN; HET: GNP; 3.0A {Homo sapiens} SCOP: d.15.1.5 which had a probability of 52.7 which is too low and a coverage of 40.9091. Phagesdb fucntion freq was aslo coming back with nothing. Overall this seems to be a Hypothetical protein /note= /note=**NCBI Blast: UDL16706 hypothetical protein SEA_ATUIN_13 [Arthrobacter phage Atuin] >gb|WWQ87565.1| hypothetical protein SEA_ATUIN_313 [Arthrobacter phage Atuin] has a coverage of 81.812 /note= /note= /note=Starterator /note=Gene: Panchaali_17 Start: 6903, Stop: 7103, Start Num: 2 /note=Candidate Starts for Panchaali_17: /note=(2, 6903), CDS 7119 - 7625 /note=Genemark and glimmer have different starts, the Z-score is 2.535 as well as there is not much information in the starterator. HHPRED and NCBI blast don`t have high percentage of probability and there are genes in both HHPRED and NCBI. /note=the highest NCBI blast is XKC21480 which is a hypothetical protein SEA_TALIA1610_34 [Arthrobacter phage Talia1610] >gb|XKC21722.1| hypothetical protein SEA_TALIA1610_320 [Arthrobacter phage Talia1610] with a coverage of 62.5. Aligned % is 56.6038 and an identity% of 36.7925 there is not much to prove that is anything but a hypothetical protein /note= /note=Gene: Panchaali_18 Start: 7119, Stop: 7625, Start Num: 1 /note=Candidate Starts for Panchaali_18: /note=(1, 7119), (2, 7149), (3, 7206), (4, 7251), (5, 7287), (6, 7353), (7, 7359), (8, 7419), (9, 7428), (10, 7509), /note=(11, 7539), (12, 7563), (13, 7611), CDS 7794 - 8291 /note=I believe this is a hypothetical protein there is nothing in the Conserved Domain database or the NCBI blast or the HHPRED there is also a gap of 168. it has been verified that it starts at 7794 from what I can observe and ends at 8291. there also dosent seem to be any thing but im not sure. /note= /note=Gene: Panchaali_19 Start: 7794, Stop: 8291, Start Num: 1 /note=Candidate Starts for Panchaali_19: /note=(Start: 1 @7794 has 4 MA`s), (2, 7800), (8, 7884), (18, 7992), (23, 8037) CDS 8382 - 8609 /note=The start and the stop have been confirmed at 8382 to 8609. there is no Phagesdb Functio frequency and there is a HHPRED data with PF06305.16 LapA_dom ; Lipopolysaccharide assembly protein A domain this has a coverage of 56%. there is evidence in DeepTMHMM (Transmembrane prediction), HHPRED, but there is no reading in NCBI BLAST and Conserved domain database. /note= /note=Gene: Panchaali_20 Start: 8382, Stop: 8609, Start Num: 1 /note=Candidate Starts for Panchaali_20: /note=(Start: 1 @8382 has 4 MA`s), (2, 8448), (3, 8457), (4, 8463), (5, 8589), CDS 8657 - 9070 /note=the start and stop locations have been confirmed at 8657 and 9070. HHPRED has evidence of a sequence 3NL9_A, putative NTP pyrophosphohydrolase; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: MSE; 1.78A {Exiguobacterium sibiricum 255-15} with a probability of 66 and a coverage of 82.4818. NCBI blast has low identity and low coverage. there is also no conserved domain database reading. im sure this is a Hypothetical protein from what I can observe in the data given /note= /note= /note=starterator:Gene: Panchaali_21 Start: 8657, Stop: 9070, Start Num: 1 /note=Candidate Starts for Panchaali_21: /note=(Start: 1 @8657 has 4 MA`s), (3, 8768), (4, 8798), (5, 8828), (7, 8909), CDS 9126 - 9323 /note=The start and stop sites have been confirmed, at 9126 and 9323. HHPRED has low probability and low Coverage. NCBI BLAST has a Hypothetical protein SEA_ATUIN_18 [Arthrobacter phage Atuin] >gb|WWQ87570.1| hypothetical protein SEA_ATUIN_318 [Arthrobacter phage Atuin] with a coverage of 98.4615. there is no conserved domain database. From the observations and data i belive this is a hypothetical protein. /note=- https://www.ncbi.nlm.nih.gov/protein/WWQ87570.1 /note= /note=Starterator:Gene: Panchaali_22 Start: 9126, Stop: 9323, Start Num: 9 /note=Candidate Starts for Panchaali_22: /note=(Start: 9 @9126 has 14 MA`s), (11, 9183), (12, 9219), CDS 9364 - 9666 /note=the start and stop locations have been confirmed at 9364 to 9666. HHPRED has PF16835.10, SF3A2 ; Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) which has a probability at 82 and coverage at 24%. NCBI blast has a hypothetical protein SEA_ATUIN_19 [Arthrobacter phage Atuin] >gb|WWQ87571.1| hypothetical protein SEA_ATUIN_319 [Arthrobacter phage Atuin] with a coverage of 97%. From the data and observations it seems to be a Hypothetical protein. /note= /note=starterator:Gene: Panchaali_23 Start: 9364, Stop: 9666, Start Num: 2 /note=Candidate Starts for Panchaali_23: /note=(Start: 2 @9364 has 14 MA`s), (16, 9547), (18, 9562), (21, 9604), (24, 9634), CDS 9758 - 10060 /note=The start and stop locations have been confirmed at 9758 and 10060. HHRED has PF23790.1 Kyano_Gp96 ; Kyanoviridae Gp96 protein with probability of 88.6 and coverage of 85. NCBI blast has XKC21477 hypothetical protein SEA_TALIA1610_30 [Arthrobacter phage Talia1610] >gb|XKC21719.1| hypothetical protein SEA_TALIA1610_316 [Arthrobacter phage Talia1610] with coverage of 90% but low identity. there is no conserved domain database. /note=-https://www.ncbi.nlm.nih.gov/protein/XKC21719.1 /note= /note=starterator:Gene: Panchaali_24 Start: 9758, Stop: 10060, Start Num: 16 /note=Candidate Starts for Panchaali_24: /note=(Start: 16 @9758 has 6 MA`s), (42, 9998), (43, 10013), (52, 10052), CDS 10209 - 10484 /note=UDL16717 hypothetical protein SEA_ATUIN_24 [Arthrobacter phage Atuin] >gb|WWQ87576.1| hypothetical protein SEA_ATUIN_324 [Arthrobacter phage Atuin] 46.6667 62.2222 91.2088 CDS complement (10212 - 10646) /note=HHPRED: (7YCA_L) PSI subunit V; Complex, Electron transport, Photosynthesis; HET: XAT, DGD, NEX, CHL, IWJ, CL0, Q6L, KC2, PQN, CLA, SF4, SQD, LHG, LMG, BCR, TPO;{Ostreococcus tauri}: Probability 22.2%, Coverage 45.8333% CDS 10720 - 11160 /note=NCBI BLAST: (UDL16718) hypothetical protein SEA_ATUIN_25 [Arthrobacter phage Atuin] >gb|WWQ87577.1| hypothetical protein SEA_ATUIN_325 [Arthrobacter phage Atuin]: Identity 47.2441%, Aligned 62.9921%, Coverage 78.0822% CDS 11311 - 11529 /note=PF14363.11 AAA_assoc ; Domain associated at C-terminal with AAA 43.1 86.1111 CDS 11587 - 11907 /note=UDL16720 hypothetical protein SEA_ATUIN_27 [Arthrobacter phage Atuin] >gb|WWQ87579.1| hypothetical protein SEA_ATUIN_327 [Arthrobacter phage Atuin] 63.6364 79.2208 66.9811 CDS complement (12046 - 12183) /note=Gene Stop at 12046. Gene Start called at 12183 by Glimmer. Genemark made no call. Start 12183 has 2 manual annotations. Fully Captures coding potential according to Gene Mark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS complement (12219 - 12377) /note=start at 12,377 due to a stronger final score, complete genemark, and longest ORF. /note=PhagesDB BLASTp annotated as RNA binding protein. /note=HHPred helps identify the RNA-binding function. /note=CDD and NCBI BLAST returned no data /note=enough evidence for RNA binding protein." /note=Mia`s Notes /note= /note=Tyler`s Notes /note="Gene Stop at 12219. Gene start called at 12377 by Glimmer and Genemark. Fully Captures coding potential according to Genemark Gene Activity Sheet. No Manual Annotations for this gene in Starterator. Blast results show no significant similarities with any genes of clustermates or other known genes." CDS 12424 - 12918 /note=Gene Stop at 12918. Gene Start called at 12424 by Glimmer. Genemark made no call. Starterator has no manual annotations. Coding Potential fully captured according the Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS complement (12396 - 12611) /note=HHpred: PF09472.15, MtrF ; Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF), Probability 18.9, Percent Coverage 52.1127 CDS complement (12694 - 12912) /note=HHpred: PF10055.14, DUF2292 ; Uncharacterized small protein (DUF2292), Probability 68.2, Percent Coverage 20.8333 /note=NCBI Blast: UDL16723, hypothetical protein SEA_ATUIN_30 [Arthrobacter phage Atuin], Percent Identity 74.6667, Percent Aligned 82.6667, Percent Coverage 100 CDS complement (13020 - 13265) /note=HHpred-DUF7767 ; Domain of unknown function (DUF7767) Probability:74.8 Coverage:76.5432 /note=no NCBI blast data CDS complement (13360 - 13575) /note=HHPRED /note= SCOP_d2i2tp1 b.34.5.6 (P:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} | CLASS: All beta proteins, FOLD: SH3-like barrel, SUPFAM: Translation proteins SH3-like domain, FAM: Ribosomal protein L19 /Probability 56.3%, Coverage 28.169% CDS complement (13865 - 14047) /note=HHpred /note= /note=PF15899.11 BNR_6 ; BNR-Asp box repeat / Probability 58%, Coverage 15% /note=PF24666.1 zf-C2H2_fungi_2 ; Fungal C2H2 zinc finger / Probability 54.8%, Coverage 26.6667% CDS complement (14142 - 14357) /note=Phagesdb Function Frequency /note=kinase 143390 subcluster FC / Frequency 100% /note=HHpred /note=PF16138.10 DUF4846 ; Domain of unknown function (4846) / Probability 72.1%, Coverage 78.8732% CDS complement (14667 - 15284) /note=NCBI Blast /note=UDL16729 hypothetical protein SEA_ATUIN_336 [Arthrobacter phage Atuin] >gb|WWQ87559.1| hypothetical protein SEA_ATUIN_36 [Arthrobacter phage Atuin] / Identity 50.2618%, Aligned 65.9686%, Coverage 99.0244% /note=XKC21490 hypothetical protein SEA_TALIA1610_44 [Arthrobacter phage Talia1610] >gb|XKC21732.1| hypothetical protein SEA_TALIA1610_330 [Arthrobacter phage Talia1610] / Identity 48.9247%, Aligned 61.828%, Coverage 100% /note=QFG12173 Hypothetical Protein OBI_RACECAR_334 [Arthrobacter phage Racecar] >gb|QFG12801.1| hypothetical protein PBI_MIMI_329 [Arthrobacter phage Mimi] >gb|WWQ87653.1| Hypothetical Protein OBI_RACECAR_45 [Arthrobacter phage Racecar] >gb|WWQ87740.1| hypothetical protein PBI_MIMI_44 [Arthrobacter phage Mimi] / Identity 42.1801%, Aligned 54.0284%, Coverage 97.0732% CDS 15632 - 15859 /note=Start 15,632chosen; Glimmer & GeneMark agree; Starterator supports Start 2 (consensus). Z-score 1.781, gap 347 bp. PhagesDB BLAST no named functions; HHpred matches DUF617 ; Protein of unknown function, DUF617 70.1 probability 14.6667% coverage CDS 15856 - 16068 /note=Start 15,856 chosen; No Glimmer start but GeneMark agree; . Z-score 3.142, gap -4 bp. PhagesDB BLAST no named functions; HHpred matches d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]} | CLASS: Alpha and beta proteins (a+b), FOLD: TBP-like, SUPFAM: TATA-box binding protein-like, FAM: TATA-box binding protein (TBP), C-terminal domain 84.4 probability 54.2857%coverage CDS complement (15832 - 16113) /note=HHpred: 5ID3_A, Mitochondrial Calcium Uniporter; calcium channel, mitochondria, pentamer, N-terminal domain truncation, Structural Genomics, PSI-Biology, Membrane Protein Structures by Solution NMR; NMR {Caenorhabditis elegans}, Probability 17.5, Percent Coverage 26.8817 CDS 16117 - 16308 /note=HHpred: PF18748.7, HMUDK_HMUD1 ; 5-hmdU DNA kinase, Probability 50.4, Percent Coverage 47.619 CDS 16324 - 16527 /note=Start 16324 chosen; Glimmer & GeneMark agree; Starterator supports Start 2 (consensus). Z-score 1.869, gap 15 bp. PhagesDB BLAST no named functions; NCBI Blast hypothetical protein SEA_ATUIN_40 [Arthrobacter phage Atuin] 56.7164 % identity 73.1343% aligned 100% coverage CDS 16656 - 16964 /note=NCBI: (UDL16734) tail needle protein [Arthrobacter phage Atuin] Identity 60.7143% Aligned 66.9643% Coverage 100% /note=(QFG12181) Hypothetical Protein OBI_RACECAR_53 [Arthrobacter phage Racecar] Identity 36.9748% /note=Aligned 48.7395% Coverage 86.25% CDS 16946 - 17857 /note=NCBI: (UDL16735) minor tail protein [Arthrobacter phage Atuin] Identity: 82.2581 Aligned: 88.0645 Coverage: 100 /note=(XKC21499) hypothetical protein SEA_TALIA1610_53 [Arthrobacter phage Talia1610] Identity: 38.6139 Aligned: 51.8152 Coverage: 91.4191 CDS 17875 - 18321 /note=NCBI: (UDL16736) membrane protein [Arthrobacter phage Atuin] Identity 81.7568%, Aligned 90.5405%, Coverage 100% /note=(QFG12183) membrane protein [Arthrobacter phage Racecar] >gb|QFG12811.1| membrane protein [Arthrobacter phage Mimi] >gb|XKC21500.1| membrane protein [Arthrobacter phage Talia1610] Identity 52.4138 Aligned: 71.0345 Coverage: 100 /note=(WP_106539765) hypothetical protein [Haloactinopolyspora alba] Identity 32.3529%, Aligned 48.0392%, Coverage 56.7568% CDS 18397 - 18708 /note=NCBI: (UDL16737) hypothetical protein SEA_ATUIN_44 [Arthrobacter phage Atuin] Identity 47.7064%, Aligned 61.4679%, Coverage 85.4369% CDS 18701 - 18979 /note=HHPRED: (PF20447.3) DUF6704 ; Family of unknown function (DUF6704) Probability: 81.7 Coverage: 52.1739 CDS 18976 - 19212 /note=HHPRED: (PF14357.11) DUF4404 ; Domain of unknown function (DUF4404) Probability: 84.7 Coverage: 46.1538 CDS 19209 - 19517 /note=HHPRED: (PF19381.4) DUF5956 ; Family of unknown function (DUF5956) Probability: 85.4 Coverage: 25.4902 CDS 19517 - 19801 /note=NCBI: (QFG12186) Hypothetical Protein OBI_RACECAR_58 [Arthrobacter phage Racecar] >gb|QFG12814.1| hypothetical protein PBI_MIMI_57 [Arthrobacter phage Mimi] Identity: 71.2766 Aligned: 78.7234 Coverage: 98.9362 CDS 19856 - 20116 /note=HHPRED: (SCOP_d2cz8a1) d.230.2.1 (A:2-68) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]} | CLASS: Alpha and beta proteins (a+b), FOLD: Dodecin subunit-like, SUPFAM: Dodecin-like, FAM: Dodecin-like Probability: 58.4 Coverage: 36.0465 CDS 20116 - 20361 /note=NCBI: (QFG12191) Hypothetical Protein OBI_RACECAR_63 [Arthrobacter phage Racecar] >gb|QFG12819.1| hypothetical protein PBI_MIMI_62 [Arthrobacter phage Mimi] >gb|XKC21508.1| hypothetical protein SEA_TALIA1610_62 [Arthrobacter phage Talia1610] Identity: 47.2973 Aligned: 58.1081 Coverage: 83.9506 /note=(UDL16745) hypothetical protein SEA_ATUIN_52 [Arthrobacter phage Atuin] Identity: 58.3333 Aligned: 68.0556 Coverage: 82.716 CDS 20358 - 20873 /note=HHPRED: (6LFT_A) ADP-ribose 1``-phosphate phosphatase; deacetylase, macro domain Probability: 99.5 Percent coverage: 97.6608 /note=NCBI: (WP_193593895) macro domain-containing protein [Paenarthrobacter sp. YJN-5] Identity: 45.3333 Aligned: 58.6667 Coverage: 97.6608 CDS 20870 - 21034 /note=HHPRED: (3NCT_A) Protein psiB; DNA BINDING PROTEIN, CHAPERONE; HET: MSE; 2.2A {Escherichia coli} Probability: 61.9 Coverage: 81.4815 /note=NCBI: (UDL16748) hypothetical protein SEA_ATUIN_55 [Arthrobacter phage Atuin] Identity: 44.2308 Aligned: 69.2308 Coverage: 100 CDS 21080 - 21298 /note=NCBI (UDL16750) membrane protein [Arthrobacter phage Atuin] Identity: 70.8333 Aligned: 80.5556 Coverage: 97.2222 /note=HHPRED: 8P1U_C Cell division protein FtsL; FtsWIQLB, Gram-negative bacteria, membrane protein, divisome, CELL CYCLE;{Pseudomonas aeruginosa} Identity: 68.7 Coverage: 93.0556 CDS 21299 - 21994 /note=NCBI: (QFG12195) Hypothetical Protein OBI_RACECAR_67 [Arthrobacter phage Racecar] >gb|QFG12823.1| hypothetical protein PBI_MIMI_66 [Arthrobacter phage Mimi] Identity: 8.24468 Aligned: 14.8936 Coverage: 52.381 CDS 22071 - 22361 /note=NCBI: (WP_363745793) DUF2493 domain-containing protein [Leucobacter sp. NPDC077196] >gb|MEV8339239.1| DUF2493 domain-containing protein [Leucobacter sp. NPDC077196] Identity: 38.6364 Aligned: 45.4545 Coverage: 90.625 CDS 22358 - 22657 /note=HHPRED: (PF05961.16) Chordopox_A13L ; Chordopoxvirus A13L protein: 53.5354% Coverage 24% Probability CDS 22654 - 22863 /note=HHPRED: (4U8U_c) L2; Erythrocruorins, Glossoscolex paulistus, Giant extracellular hemoglobin, OXYGEN STORAGE-Transport complex; HET: CYN, HEM, NAG; 3.2A {Glossoscolex paulistus} 89.8551% Coverage 82.1% Probability CDS 22863 - 23141 /note=NCBI BLAST: (MEM3452125) hypothetical protein [Candidatus Hadarchaeum sp.]: Identity 22.7642%, Aligned 36.5854%, Coverage 90.2174% CDS 23176 - 24099 /note=NCBI BLAST: (UDL16755) phosphoribosyl transferase [Arthrobacter phage Atuin]: Identity 78.0328%, Aligned 85.5738%, Coverage 99.3485% CDS 24096 - 24299 /note=HHPRED: (6WVG_A) Photosystem II protein W; Photosystem II associated with CAC antenna from Rhodomonas Salina, PHOTOSYNTHESIS; HET: PHO, LHG, LMG, WVN, IHT, CLA, DGD, HEM, SQD, KC2, PL9, II0;{Rhodomonas salina}: Probability 44.9%, Coverage 91.0448% CDS 24360 - 25442 /note=HHPRED: (6YXX_E2) DUF4379 domain-containing protein; mitoribosome, assembly, LSU, RIBOSOME; HET: NAD, ATP, MG, PM8, GTP; 3.9A {Trypanosoma brucei brucei}: Probability 99.8%, Coverage 67.5% CDS 25446 - 27047 /note=CDD: (PHA02594) nicotinamide phosphoribosyl transferase; Provisional.: Identity 44.2553%, Aligned 58.7234%, Coverage 96.4353% CDS 27051 - 27302 /note=HHPRED: (PF08722.17) Tn7_TnsA-like_N ; TnsA-like endonuclease N terminal: Probability 23.2%, Coverage 81.5789% CDS 27332 - 27826 /note=HHPRED: (4FCY_A) Transposase; RNaseH, DDE transposase, DNA BINDING PROTEIN-DNA complex; 3.706A {Enterobacteria phage Mu}: Probability 95.6%, Coverage 97.561% CDS 27819 - 28139 /note=HHPRED: (9CGY_A) PTB_DOK7; Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi). The Dok family adapters are phosphorylated by different protein tyrosine kinases.: Probability 20.2%, Coverage 76.4151% CDS 28160 - 28369 /note=HHPRED: (SCOP_d2nrha2) c.55.1.13 (A:83-208) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]} | CLASS: Alpha and beta proteins (a/b), FOLD: Ribonuclease H-like motif, SUPFAM: Actin-like ATPase domain, FAM: CoaX-like: Probability 26.5%, Coverage 71.0145% CDS 28341 - 28625 /note=HHPRED: (PF07098.16) DUF1360 ; Protein of unknown function (DUF1360): Probability 99.9%, Coverage 87.234% CDS 28678 - 30309 /note=HHPRED: (9B41_G) gp19 Portal; phage, bacteriophage, gene product (gp19), STRUCTURAL PROTEIN, VIRAL PROTEIN, gene product 28 (gp28), head-to-tail protein, portal; 3.2A {Pseudomonas virus Pa193}: Probability 99.5%, Coverage 89.1344% CDS 30313 - 39819 /note=HHPRED: (8XI2_Q) Intron-binding protein aquarius; Chlamydomonas spliceosome, C* complex, Cdc5L, RNA splicing, SPLICING; HET: G5J, GTP, SEP; 2.6A {Chlamydomonas reinhardtii}: Probability 99.3%, Coverage 20.423% CDS 39800 - 40129 /note=HHPRED: (4V8G_CV) Ribosome modulation factor; ribosome modulation factor, stress response, small subunit head movement, stationary phase, ribosome hibernation, RIBOSOME; HET: MG, ZN; 3.0A {Thermus thermophilus}: Probability 99%, Coverage 48.6239% CDS 40137 - 40424 /note=Gap is acceptable (7 bp). Good Z-score (1.89). /note=BLASTp hit: SEA_ATUIN_73 [Arthrobacter phage Atuin] with 98.9% coverage. Accession: UDL16766. CDS 40562 - 42946 /note=Does not match GeneMark start site. Appears to be three different genes in Gene Mark. Big gap. /note=Functions match: capsid maturation protease (87%), capsid morphogenesis protein (10%), and capsid maturation protease (3%). /note=NCBI matches: hypothetical protein SEA_ATUIN_74 [Arthrobacter phage Atuin] (accession: UDL16767; 99.8% coverage, 75% identity, 84.7% aligned), hypothetical protein SEA_TALIA1610_79 [Arthrobacter phage Talia1610] (accession: XKC21525; 100% coverage, but lower identity and aligned), and Hypothetical Protein OBI_RACECAR_80 [Arthrobacter phage Racecar] >gb|QFG12836.1| hypothetical protein PBI_MIMI_79 [Arthrobacter phage Mimi] (accession: QFG12208; 100% idetity, even lower identity and aligned). CDS 42946 - 44454 /note=Gap is consistent, even though there is a small overlap (-1). Z-score is good (2.838). /note=NCBI match 100% with capsid maturation protease. CDS 44604 - 46667 /note=Likely major capsid hexamer protein. /note=NCBI: major capsid hexamer protein [Arthrobacter phage Racecar] >gb|QFG12838.1| major capsid hexamer protein [Arthrobacter phage Mimi] >gb|XKC21527.1| major capsid hexamer protein [Arthrobacter phage Talia1610] (accession: QFG12210; 100% coverage). CDS 46724 - 47593 /note=Likely major capsid pentamer protein. /note=NCBI match: hypothetical protein SEA_ATUIN_77 [Arthrobacter phage Atuin] (accession: UDL16770; 100% coverage), hypothetical protein SEA_TALIA1610_82 [Arthrobacter phage Talia1610] (accession: XKC21528; 100% coverage), Hypothetical Protein OBI_RACECAR_83 [Arthrobacter phage Racecar] >gb|QFG12839.1| hypothetical protein PBI_MIMI_82 [Arthrobacter phage Mimi] (accession: QFG12211; 100% coverage). CDS 47609 - 48253 /note=Likely major tail protein. /note=There is no gene read/marked in GeneMark, but there is a signal on the likely start and end that were detected by PECAAN. Selecting said gene for further analysis. /note=NCBI matches at 100%: Hypothetical Protein OBI_RACECAR_84 [Arthrobacter phage Racecar] >gb|QFG12840.1| hypothetical protein PBI_MIMI_83 [Arthrobacter phage Mimi] >gb|XKC21529.1| hypothetical protein SEA_TALIA1610_83 [Arthrobacter phage Talia1610] (accession: QFG12212), MAG: major tail protein [Caudoviricetes sp.] (accession: XYN16923). CDS 48344 - 49036 /note=Likely UDL16772. /note=There is signal in GeneMark, but it is not marked as a gene. NCBI BLAST has 100% coverage with head-to-tail adaptor [Arthrobacter phage Atuin] (accession: UDL16772). CDS 49033 - 49311 /note=Partial marking on GeneMark, weak signal. Start site cannot be confirmed. /note=Over 90% coverage with hypothetical protein SEA_ATUIN_80 [Arthrobacter phage Atuin] (accession: UDL16773) and Hypothetical Protein OBI_RACECAR_86 [Arthrobacter phage Racecar] >gb|QFG12842.1| hypothetical protein PBI_MIMI_85 [Arthrobacter phage Mimi] >gb|XKC21531.1| hypothetical protein SEA_TALIA1610_85 [Arthrobacter phage Talia1610] (accession: QFG12214). CDS 49334 - 49870 /note=Barely any signal in GeneMark, could be nothing. Needs review. /note=However, there are >90% matches in NCBI BLAST: hypothetical protein SEA_ATUIN_81 [Arthrobacter phage Atuin], hypothetical protein SEA_TALIA1610_86 [Arthrobacter phage Talia1610], and Hypothetical Protein OBI_RACECAR_87 [Arthrobacter phage Racecar] >gb|QFG12843.1| hypothetical protein PBI_MIMI_86 [Arthrobacter phage Mimi]. CDS 49870 - 50250 /note=No gene detected in GeneMark, however there seems to be a semi-strong signal. Needs further review. /note=Likely tail assembly chaperone or minor capsid protein. NCBI BLAST 100% with hypothetical protein SEA_ATUIN_82 [Arthrobacter phage Atuin] (accession: UDL16775), and 98% coverage in HHPRED with Minor_capsid_2 ; Minor capsid protein (hit: PF11114.13 and 99.4% probability). Contradictory. Again, needs review. CDS 50285 - 50629 /note=Likely tail assembly chaperone. /note=NCBI: tail assembly chaperone [Arthrobacter phage Atuin] (accession: UDL16776, with coverage 98%). CDS 51010 - 57891 /note=Likely tape measure protein. /note=NCBI with 99% coverage on tape measure protein [Arthrobacter phage Atuin] (accession: UDL16778). CDS 57905 - 58756 /note=Likely minor tail protein. /note=NCBI BLAST 100% coverage with minor tail protein [Arthrobacter phage Atuin] (accession: UDL16779) and minor tail protein [Arthrobacter phage Racecar] >gb|QFG12847.1| minor tail protein [Arthrobacter phage Mimi] >gb|XKC21536.1| minor tail protein [Arthrobacter phage Talia1610] (accession: QFG12219). CDS 58770 - 59690 /note=No gene detected in GeneMark. Strong signal really starts at around 59,200 and ends around 59,600. Hypothetical start at 58,770 due to good gap and good z-score, weak signal in GeneMark. /note=Strong possibility for this gene to be a minor tail protein. NCBI BLAST: minor tail protein [Arthrobacter phage Racecar] >gb|QFG12848.1| minor tail protein [Arthrobacter phage Mimi] >gb|XKC21537.1| hypothetical protein SEA_TALIA1610_92 [Arthrobacter phage Talia1610] (coverage 100%, accession: QFG12220), and minor tail protein [Arthrobacter phage Atuin] (coverage 100%, accession: UDL16780). CDS 59690 - 60808 /note=Glimmer and GeneMark start do not match. Very strong signal in the gap selected, although GeneMark detected no gene. /note=NCBI BLAST 100% coverage with minor tail protein [Arthrobacter phage Atuin] (accession: UDL16781), and minor tail protein [Arthrobacter phage Racecar] >gb|QFG12849.1| minor tail protein [Arthrobacter phage Mimi] >gb|XKC21538.1| minor tail protein [Arthrobacter phage Talia1610] (accession: QFG12221). HHPRED 99.9% probability of Minor tail protein; Bacteriophage, tail tip, VIRAL PROTEIN;{Mycobacterium phage Bxb1}. CDS 60813 - 73469 /note=frequent NCBI identity, but only 20% identity match /note=BLAST: minor tail protein [Arthrobacter phage Atuin] CDS 73478 - 73813 /note=frequent NCBI Blast, function unknown /note=BLAST: Hypothetical Protein OBI_RACECAR_96 [Arthrobacter phage Racecar] >gb|QFG12851.1| hypothetical protein PBI_MIMI_95 [Arthrobacter phage Mimi] >gb|XKC21540.1| hypothetical protein SEA_TALIA1610_95 [Arthrobacter phage Talia1610] 67% identity match CDS 73901 - 74458 /note=NCBI Blast 80% identity match with Arthrobacter phage, but multiple % matches with other bacteria species /note=in Genemark it appears to actually be reverse not forward CDS 74518 - 75255 /note=BLAST: hypothetical protein SEA_ATUIN_92 [Arthrobacter phage Atuin] 69% identity match CDS 75288 - 77090 /note=BLAST: DNA polymerase I [Arthrobacter phage Atuin] 77% identity match /note=100% matching but as a Homo sapiens gene with HHPRED: DNA polymerase nu; Pol Nu, Polymerase, error-prone DNA synthesis, TRANSFERASE-DNA complex; HET: MES; 2.95A {Homo sapiens} CDS 77087 - 77539 /note=BLAST: RuvC-like resolvase [Arthrobacter phage Atuin] 79% idenity match /note=HHPRED: c.55.3.6 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]} | CLASS: Alpha and beta proteins (a/b), FOLD: Ribonuclease H-like motif, SUPFAM: Ribonuclease H-like, FAM: RuvC resolvase 99% probability CDS 77571 - 79412 /note=BLAST: DNA helicase [Arthrobacter phage Atuin] 81% idenity match CDS 79422 - 80183 /note=NBCI BLAST: ThyX-like thymidylate synthase [Arthrobacter phage Atuin] 57% identity match /note=HHPRED: Flavin-dependent thymidylate synthase; Thymidylate synthase, pyrimidine nucleotide biosynthetic pathway, C-terminal domain, Structural Genomics, TRANSFERASE; HET: FAD, PO4; 2.5A {Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)} 100% probability CDS 80207 - 81178 /note=NCBI BLAST: Cas4-family exonuclease [Arthrobacter phage Atuin] 94% identity match with 100% coverage CDS 81223 - 82020 /note=NCBI BLAST: RecA-like DNA recombinase [Arthrobacter phage Atuin] 75% identity match /note=HHPRED: ORF016; Annealase, SSAP, Single Strand Annealing, Single Strand Binding, Recombineering, Recombination, SaPI, Bacteriophage, Staphylococcal, Complex, SaPI induction; HET: AGS; 3.35A {Staphylococcus phage 52A} 99% probability CDS 82099 - 82770 /note=HHPRED: PrgE; SSB, DNA BINDING PROTEIN; HET: PGE; 2.67A {Enterococcus faecalis} 99% probability and NCBI: ssDNA binding protein [Arthrobacter phage Atuin] 78% identity match CDS 82860 - 83471 /note=NCBI BLAST: MazG-like nucleotide pyrophosphohydrolase [Arthrobacter phage Atuin] 70% identity match /note=HHPRED: NTP-PPase_YP_001813558; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Exiguobacterium sibiricum YP_001813558 100% probability CDS 83455 - 83892 /note=NCBI BLAST: hypothetical protein SEA_ATUIN_101 [Arthrobacter phage Atuin] 34% identity match CDS 83918 - 84178 /note=NCBI BLAST: NrdH-like glutaredoxin [Arthrobacter phage Atuin] 82% identity match CDS 84181 - 84570 /note=6EBQ_A Protein NrdI; ribonucleotide reductase, NrdI, flavoprotein, RNR, FMN, class Ie; HET: FMN; 1.95A {Aerococcus urinae} 98.5 96.6667 /note= UDL16796 ribonucleotide reductase [Arthrobacter phage Atuin] 35.6589 37.2093 98.3333 CDS 84551 - 86689 /note=UDL16797 /note=ribonucleotide reductase [Arthrobacter phage Atuin] /note= 1PEQ_A Ribonucleoside-diphosphate reductase 2 alpha chain; 10 stranded alpha/beta barrel, protein-specificity-effector complex, dTTP, OXIDOREDUCTASE; HET: TTP; 2.8A {Salmonella typhimurium} SCOP: a.98.1.1, c.7.1.2 100 99.0169 CDS 86777 - 87727 /note=UDL16798 ribonucleotide reductase [Arthrobacter phage Atuin] 93.3544 95.2532 100 /note= 4N83_A Ribonucleoside-diphosphate reductase subunit beta; OXIDATION-REDUCTION, FLAVIN MONONUCLEOTIDE, MANGANESE, OXIDOREDUCTASE; HET: MN; 2.65A {Streptococcus sanguinis} SCOP: a.25.1.0 100 99.6835 CDS 87727 - 87879 /note=UDL16799 hypothetical protein SEA_ATUIN_106 [Arthrobacter phage Atuin] 54 66 92 CDS 87889 - 88302 /note=UDL16800 phosphatase phosphatase [Arthrobacter phage Atuin] 94.1606 96.3504 100 /note= 1L7M_A Phosphoserine Phosphatase; Rossmann Fold, four-Helix bundle, b-hairpin, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI; HET: MSE, PO4; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 99.6 70.073 CDS 88851 - 90476 /note=UDL16801 Ro-like RNA binding protein [Arthrobacter phage Atuin] 71.8464 82.2669 100 /note=2NVO_A Ro sixty-related protein, RSR; alpha helical repeats, von Willebrand Factor A domain, beta-sheet, RNA BINDING PROTEIN; 1.89A {Deinococcus radiodurans} SCOP: c.62.1.0 100 93.7153 CDS 91383 - 91556 /note=UDL16802 hypothetical protein SEA_ATUIN_115 [Arthrobacter phage Atuin] 89.2857 91.0714 98.2456 CDS 91789 - 91974 /note=PF22002.1 MTLN ; Mitoregulin 88.9 75.4098 CDS 92830 - 93147 /note=UDL16763 portal protein [Arthrobacter phage Atuin] 6.27306 11.4391 76.259 /note=portal protein 265109 B3 28 44 CDS 93261 - 93524 /note=UDL16804 hypothetical protein SEA_ATUIN_128 [Arthrobacter phage Atuin] 83.908 90.8046 98.8506. PF14083.11 PGDYG ; PGDYG protein 99 83.908 CDS 94170 - 94463 /note=QFG12249 membrane protein [Arthrobacter phage Racecar] 38.9381 60.177 92.7835 CDS 94543 - 94719 /note=UDL16806 hypothetical protein SEA_ATUIN_135 [Arthrobacter phage Atuin] 57.6271 72.8814 89.6552 CDS 94694 - 94846 /note=no blast results and in HHPRED the highest coverage is 93% with Spermidine N1-acetyltransferase; SpeG, Acetyltransferase, Allosteric enzyme, GNAT, TRANSFERASE; HET: SPM; 2.5A {Bacillus thuringiensis} SCOP: d.108.1.0 CDS 94861 - 95280 /note=Hypothetical Protein OBI_RACECAR_147 [Arthrobacter phage Racecar] >gb|QFG12878.1| nuclease [Arthrobacter phage Mimi] % Identity 27.0073 % aligned 30.6569 % coverage 93.75 CDS 95349 - 97271 /note=UDL 16808 endolysin [Arthrobacter phage Atuin] % Identity 78.357 % Aligned 87.0458 % Coverage 99.2188 CDS 97398 - 98120 /note=endolysin, protease domain [Arthrobacter phage Atuin] NCBI blast has a 99% coverage UDL16809 CDS 98220 - 98435 /note=No blast results and the HHPRED highest coverage is 97% with this protein. Adapter protein MecA; Chaperone, AAA+ protein, unfoldase; 11.0A {Staphylococcus aureus} CDS 98466 - 99050 /note=Hypothetical Protein OBI_RACECAR_153 [Arthrobacter phage Racecar] >gb|XKC21571.1| hypothetical protein SEA_TALIA1610_153 [Arthrobacter phage Talia1610] with a 98% coverage QFG12257 CDS 99051 - 99782 /note=it may be a DnaE-like DNA polymerase III (alpha) [Arthrobacter phage Mimi] because it has a 98% coverage with the blast and its also shown in the HHPRED with a 87% coverage 3`-5` exonuclease DinG; exonuclease, HYDROLASE/DNA, DNA repair, HYDROLASE-DNA complex; 3.21A {Staphylococcus aureus (strain NCTC 8325 / PS 47)} CDS 99779 - 100108 /note=the blast only showed one result, and it was (hypothetical protein SEA_ATUIN_141 [Arthrobacter phage Atuin] and it was 76% coverage so not enough it say its anything else. CDS 100460 - 100885 /note=No NCBI BLAST results and HHPRED highest coverage is 46% with a LP15968p; catalytic domain of alpha/beta-hydrolase fold, C-terminal, all-beta transthyretin-like domain, Hydrolase; HET: GEM, NAG, GOL; 2.7A {Drosophila melanogaster} CDS 101007 - 101774 /note=hypothetical protein SEA_ATUIN_147 [Arthrobacter phage Atuin] with the coverage score being 100% in the NCBI blast CDS 101776 - 102108 /note=hypothetical protein SEA_ATUIN_148 [Arthrobacter phage Atuin] 100 % in the NCBI BLAST CDS 102119 - 102511 /note=hypothetical protein SEA_ATUIN_150 [Arthrobacter phage Atuin] the coverage was 96% under the NCBI BLAST CDS 102508 - 102852 /note=hypothetical protein SEA_ATUIN_151 [Arthrobacter phage Atuin] 97% coverage in the NCBI BLAST CDS 103040 - 104101 /note=UDP-glucose dehydrogenase [Arthrobacter phage Atuin] coverage was 100% to go along with that found this in the HHPRED blast with a 99.7% coverage . 336aa long hypothetical dTDP-glucose 4,6-dehydratase; ROSSMANN FOLD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics; HET: NAD; 2.07A {Pyrococcus horikoshii} SCOP: c.2.1.0 CDS 104102 - 104734 /note=100 % coverage based on the NCBI BLAST NUMOD3 domain-containing DNA-binding protein [Agromyces sp. NPDC058064] >gb|MFF2493648.1| NUMOD3 domain-containing DNA-binding protein [Agromyces sp. NPDC058064] WP_386938407 CDS complement (104662 - 104784) /note=HHpred: 4YJZ_L, scFv H2526; {Influenza A virus}, Probability 54.7,Percent Coverage 77.5 /note=NCBI Blast: N/A CDS 104800 - 106908 /note=HHpred: Heat shock protein 75 kDa, mitochondrial, Fibronectin binding protein fusion; Hsp90, CHAPERONE; HET: ADP;{Homo sapiens}, probability 98.5, percentage 22.2222, /note=NCBI Blast: hypothetical protein SEA_ATUIN_154, percent identity 55.5712, percent coverage 100, percent alligned 73.3427 /note=CDD: pfam13589, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. Percent Identity 22.963, Percent Aligned 39.2593, Percent Coverage 18.3761 CDS 106936 - 107907 /note=HHpred: DUF7666 Domain of unknown function, probability 98.6, percent coverage 33.7461, /note=NCI Blast: hypothetical protein SEA_ATUIN_155 [Arthrobacter phage Atuin], percent identity 66.2461, percent aligned 80.1262, percent coverage 100 CDS 107904 - 108107 /note=HHpred: Tmemb_185A ; Transmembrane Fragile-X-F protein, TMEM185A protein, probability 94.8, percent coverage 37.3134 /note=NCBI Blast: hypothetical protein HOY79_17550 Streptomyces sp., percent identity 50.6667, aligned 62.6667, coverage 92.5373 CDS 108156 - 108674 /note=HHpred: PF18143.6, HAD_SAK_2 ; HAD domain in Swiss Army Knife RNA repair proteins, probability 99.9, percent coverage 92.4419 /note=NCBI Blast: phosphatase [Arthrobacter phage Atuin], Percent Identity 72.5146, Percent Aligned 83.6257, Percent Coverage 100 /note=CDD: Percent Identity 19.5804, Aligned 39.8601, Coverage 93.0233 CDS 108781 - 109389 /note=HHpred: 8CTL_D, IscB; CRISPR, IscB, HEARO RNA, omega RNA, RNA BINDING PROTEIN-RNA-DNA complex; 3.1A {synthetic construct}, Probability 98.7, Percent Coverage 27.2277 /note=NCBl Blast: UDL16823, HNH endonuclease [Arthrobacter phage Atuin] Percent identity 57.0588, Percent Aligned 68.8235, Percent Coverage 83.6634 /note=CCD: COG1403, 5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms]. Percent Identity 39.0625, Percent Aligned 48.4375, Percent Coverage 27.7228 CDS 109408 - 109602 /note=HHpred: SCOP_d3pwfa2, g.41.5.0 (A:135-171) automated matches {Pyrococcus furiosus [TaxId: 2261]} | CLASS: Small proteins, FOLD: Rubredoxin-like, SUPFAM: Rubredoxin-like, FAM: automated matches, Probability 85.9, Percent Coverage 37.5 /note=NCBl Blast: UDL16824, hypothetical protein SEA_ATUIN_161 [Arthrobacter phage Atuin], Percent identity 93.75, Percent Aligned 96.875, Percent Coverage 100 CDS complement (109740 - 111167) /note=HHpred: cd07386, MPP_DNA_pol_II_small_archeal_C; archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain, Probability 99.4, Percent coverage 12.4211 /note=NCBl Blast: UDL16825, Mre11 double-strand break endo/exonuclease [Arthrobacter phage Atuin], Percent Identity 76.3889, Percent Aligned 82.3413, Percent Coverage 100 CDS 111232 - 111618 /note=HHpred: PF11753.13, DUF3310 ; Protein of unknown function (DUF3310), Probability 99.4, Percent coverage 42.1875 /note=NCBI Blast: XYN27238, MAG: nucleotide kinase [Caudoviricetes sp.], Percent Identity 75, Percent Aligned 87.5, Percent Coverage 55.4688 /note=CDD: pfam11753, Protein of unknown function (DUF3310). This is a family of conserved bacteriophage proteins of unknown function. Percent Identity 47.4576, Percent Aligned 61.0169, Percent Coverage 44.5312 CDS 111608 - 111799 /note=HHpred: cd01737, LSm16_N; Like-Sm protein 16, N-terminal domain., Probability 41.8 Percent Coverage 22.2222 /note=NCBI Blast: UDL16827, hypothetical protein SEA_ATUIN_164 [Arthrobacter phage Atuin], Percent Coverage 92.0635, Percent Aligned 95.2381, Percent Coverage 100 CDS 111799 - 112857 /note=HHpred: cd03821, GT4_Bme6-like; Brucella melitensis Bme6 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases., Probability 100, Percent Coverage 95.1705 /note=NCBI Blast: UDL16828, glycosyltransferase [Arthrobacter phage Atuin], Percent Identity 77.9037, Percent Aligned 87.8187, Percent Coverage 99.7159 /note=CDD: cd03794, Escherichia coli WbuB and similar proteins. Percent Identity 14.8338, Percent Aligned 27.3657, Percent Coverage 73.5795 CDS 112850 - 113089 /note=HHpred: PF19735.4, DUF6225, Family of unknown function (DUF6225), Probability 96.7, Percent Coverage 37.9747 /note=NCBI Blast: UDL16829 hypothetical protein SEA_ATUIN_166 [Arthrobacter phage Atuin], Percent Identity 71.6049, Percent Aligned 85.1852, Percent Coverage 100 CDS 113192 - 114172 /note=HHpred: PF06067.16, DUF932 ;Domain of unknown function (DUF932), Probability 99.9, Percent Coverage 68.4049 /note=NCBI Blast: UDL16830 hypothetical protein SEA_ATUIN_167 [Arthrobacter phage Atuin], Percent Identity 74.3284, Percent Aligned 82.9851, Percent Coverage 99.6933 /note=CDD: TIGR03299, phage/plasmid-like protein TIGR03299. Percent Identity 29.4498, Percent Aligned 44.9838, Percent Coverage 91.411 CDS 114299 - 115168 /note=HHpred: 8RRH_I Prohibitin 1; Chaperone, Lipid organization, Protease regulator, MEMBRANE PROTEIN; 16.3A {Homo sapiens}, Probability 100, Percent Coverage 91.6955 /note=NCBI Blast: UDL16831 membrane protein [Arthrobacter phage Atuin], Percent Identity 81.6327, Percent Aligned 89.1156, Percent Coverage 96.1938 /note=CDD: cd03401, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. Percent Identity 29.2308, Percent Aligned 50.2564, Percent Coverage 73.3564 CDS 115335 - 115940 /note=HHpred: 3BCV_A, Putative glycosyltransferase protein; Glycosyltransferase, Protein Structure Initiative II, PSI-II, 12059a, NYSGXRC, Structural Genomics, New York SGX Research Center for; HET: MSE; 2.35A {Bacteroides fragilis}, Probability 99.9, Coverage 97.0149 /note=NCBI Blast: UDL16832, glycosyltransferase [Arthrobacter phage Atuin] Percent Identity 88.6139, Percent Aligned 95.0495, Percent Coverage 99.5025 /note=CDD: COG0463, Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]. Percent Identity 25.4808, Percent Aligned 38.9423, Percent Coverage 98.0099 CDS 115934 - 116593 /note=HHpred: cd06421, CESA_CelA_like;, Probability 99.9, Percent Coverage 83.5616 /note=NCBI Blast: UDL16833, glycosyltransferase [Arthrobacter phage Atuin], Percent Identity 66.5138, Percent Aligned 76.6055, Percent Coverage 98.6301 /note=CDD: COG1216, Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]. Percent Identity 19.802, Percent Aligned 34.1584, Percent Coverage 79.9087 /note= /note=glycosyltransferase [Arthrobacter phage Atuin] CDS 116590 - 117027 /note=HHPRED cd02173 ECT; CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway.; NCBI BLAST UDL16834 nucleotidyl transferase [Arthrobacter phage Atuin] Identity: 90.3448% Aligned: 95.1724% Coverage:100% CDS 117098 - 117382 /note=HHPRED DUF2614 ; Zinc-ribbon containing domain, NCBI BLAST UDL16835 membrane protein [Arthrobacter phage Atuin] Identify: 88.0435% Aligned: 93.4783% Coverage:95.7447% /note= /note=NCBI /note= /note=UDL16835 No 2024-03-04 membrane protein membrane protein [Arthrobacter phage Atuin] ID:88.0435% ALIGN:93.4783% COVERAGE:95.7447% CDS 117390 - 118610 /note=HHPRED 5TT6_A T4 RNA ligase 1; metal catalysis, covalent nucleotidyltransferase, lysyl-AMP, LIGASE; HET: ATP; 2.187A {Enterobacteria phage T4} probability: 100% coverage: 90.3941% /note= /note=NCBI BLAST: UDL16836 RNA ligase [Arthrobacter phage Atuin] Identity: 73.6041 Aligned: 84.0102 Coverage: 95.8128 /note= /note=RNA ligase CDS 118611 - 119075 /note=HHPRED: 8H1R_C Uncharacterized lipoprotein YifL; Lipopolysaccharide, Lipoprotein, LptDE, MEMBRANE PROTEIN; HET: PCJ; 2.98A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)} Probability: 97.4 Coverage:14.2857 /note= /note=NCBI: UDL16837hypothetical protein SEA_ATUIN_174 [Arthrobacter phage Atuin] Identify 69.7368% Aligned: 73.0263% Coverage: 77.2727% /note= /note=hypothetical protein CDS 119087 - 120022 /note=HHPRED 4XRP_A Pnkp1; RNA repair, kinase, phosphatase, methyltransferase, ligase, PROTEIN BINDING; HET: PO4, SO4, GOL; 3.3A {Capnocytophaga gingivalis} Probability:100% Coverage:99.3569% /note= /note=UDL16838 Yes 2024-03-04 polynucleotide kinase polynucleotide kinase [Arthrobacter phage Atuin] Identity:87.055 Aligned:93.5275 Coverage:100 CDS 120022 - 120204 /note=HHPRED /note=PF02011.21 Glyco_hydro_48 ; Glycosyl hydrolase family Probability: 54.7% Coverage: 95% /note= /note=3CT8_A Putative glyoxalase; NP_243026.1, Putative Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein; HET: UNL; 2.1A {Bacillus halodurans C-125} Probability:55.3% Coverage:56.6667% /note= /note= /note= /note=No CCD or NCBI Blast results, function unknown CDS 120271 - 120525 /note=HHPRED PF24254.1 DUF7455 ; Domain of unknown function (DUF7455) Probability: 99.9% Coverage: 63.0952% /note= /note=NCBI QFG12905 hypothetical protein PBI_MIMI_183 [Arthrobacter phage Mimi] ID: 77.381 Alignment: 86.9048 Coverage: 100% /note= /note=No known function. CDS 120585 - 121331 /note=NCBI BLAST /note= /note=UDL16841 tRNA nucleotidyl transferase [Arthrobacter phage Atuin] ID89.7119 Align93.8272 Coverage 97.9839 /note= /note=db Blast Atuin 178 tRNA nucleotidyl transferase /note= /note=CCD COG0617 tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]. tRNA nucleotidyltransferase/poly(A) polymerase is part of the Pathway/BioSystem: tRNA modification. ID:19.6931 Align: 27.11 Function: 79.8387 CDS 121403 - 122689 /note=HHPRED /note=PF02562.22 PhoH ; PhoH-like protein Prob:99.9% Coverage:48.3645% /note=3B85_A Phosphate starvation-inducible protein; Corynebacterium glutamicum, PhoH2, ATPase, PFAM: PF02562, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural; HET: MSE, SO4; 2.35A {Corynebacterium glutamicum ATCC 13032} Probability 99.8% Coverage: 48.8318% /note= /note=NCIB /note=QFG12281 RecA-like DNA recombinase [Arthrobacter phage Racecar] ID 49.6487 ALIGNED: 70.0234 COVERAGE: 99.7664 /note=QFG12907 RecA-like DNA recombinase [Arthrobacter phage Mimi] ID 49.6487 ALIGNED: 69.7892 COVERAGE:99.7664 CDS 122700 - 122903 /note=HHPRED 7UQ2_D Vs.4; Binds 3`, 3`-cGAMP, VIRAL PROTEIN; HET: 4BW; 2.0A {Tequatrovirus} Probability: 99.8 COVERAGE:95.5224 /note= /note=NCBI /note= /note=WP_098795525 Acb2/Tad1 domain-containing protein [Bacillus sp. AFS040349] >gb|PGT89228.1| hypothetical protein COD11_04310 [Bacillus sp. AFS040349] ID:66.1765% ALIGNED: 76.4706% COVERAGE: 95.5224% CDS 123043 - 125577 /note=HHPRED no results /note= /note=NCBI WP_411721614 hypothetical protein, partial [Mycetocola sp.] ID:74.6289 ALIGNED: 88.2591 COVERAGE: 87.5592 CDS 125682 - 126464 /note=Function frequency: minor tail protein /note= /note=HHPRED no results /note= /note=NCBI /note=XKC21597 No 2024-11-13 hypothetical protein SEA_TALIA1610_188 [Arthrobacter phage Talia1610] ID:81.1538% Align: 90.7692% Coverage 100% /note= /note=No CCD CDS 126457 - 134247 /note=HHPRED 5A57_A ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE; HYDROLASE, ENDO-BETA-N-ACETYLGALACTOSAMINIDASE, GLYCOSIDE HYDROLASE FAMILY 101, GH101, T-ANTIGEN, MUCIN DEGRADATION; HET: 5G0, CIT, GAL, EDO; 1.46A {STREPTOCOCCUS PNEUMONIAE} Probability: 99.6% Coverage: 11.8644% /note= /note=No reliable NCBI blast /note= /note=CCD COG4625 Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown]. ID6.44444% Aligned: 7.44444% Coverage:18.7596% CDS 134327 - 135115 /note=HHPRED: PF12273.13 RCR ; Chitin synthesis regulation, resistance to Congo red Probability:89.6% Coverage: 9.54198% /note= /note=NCBI UDL16845 No 2024-03-04 membrane protein membrane protein [Arthrobacter phage Atuin] ID:87.1094% ALIGNED:92.1875% COVERAGE:97.3282% /note= /note=No CCD CDS 135235 - 135906 /note=RlaP ; RNA repair pathway DNA polymerase beta family probability 100 % coverage 94.1704; nucleotidyl transferase [Arthrobacter phage Atuin] identity 79.638 aligned 91.8552 coverage 96.4126 CDS 135899 - 136222 /note=HHPred: Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase; de-N-acetylase, Aggregatibacter actinomycetemcomitans, Zinc Inhibition, HYDROLASE; HET: MSE; 2.05A {Aggregatibacter actinomycetemcomitans} CDS 136212 - 137588 /note=HHPred:Mitochondrial chaperone BCS1; translocation, Rieske, mitochondira, inner mitochondiral membrane, TRANSLOCASE; 4.4A {Saccharomyces cerevisiae} CDS 137651 - 137923 /note=HHPred: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; MULTI PROTEIN COMPLEX, LIGASE, Protein biosynthesis; HET: ASN, ADP; 2.3A {Aquifex aeolicus} CDS 137916 - 138344 /note=HHpred: Transcriptional regulator WhiB1; nitric oxide, sigmaA, iron-sulfur, tuberculosis, Wbl protein, SIGNALING PROTEIN; HET: SF4; NMR {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)} CDS 138408 - 140498 /note=ATP-DEPENDENT DNA HELICASE TA0057; HYDROLASE, HELICASE, NUCLEOTIDE EXCISION REPAIR; HET: SO4; 2.2A {THERMOPLASMA ACIDOPHILUM} CDS 140506 - 141657 /note=DNA primase [Arthrobacter phage Atuin] 74.6114 85.2332 100 CDS 141690 - 141800 /note=DUF2605 ; Protein of unknown function (DUF2605) CDS complement (141654 - 141920) /note=DUF7029 ; Domain of unknown function (DUF7029) CDS 142224 - 142505 /note=b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} | CLASS: All beta proteins, FOLD: Immunoglobulin-like beta-sandwich, SUPFAM: PapD-like, FAM: Pilus chaperone CDS 142558 - 144219 /note=DNA helicase [Arthrobacter phage Atuin] 83.2432 90.0901 100 CDS 144293 - 144589 /note=hypothetical protein SEA_ATUIN_193 [Arthrobacter phage Atuin] 55.7895 70.5263 96.9388 CDS 144586 - 144753 /note=hypothetical protein SEA_ATUIN_194 [Arthrobacter phage Atuin] 64.2857 83.3333 76.3636 CDS 144812 - 145174 /note=hypothetical protein SEA_ATUIN_195 [Arthrobacter phage Atuin] 39.8438 62.5 99.1667 CDS 145224 - 145463 /note=hypothetical protein SEA_ATUIN_196 [Arthrobacter phage Atuin] 39.7727 60.2273 97.4684 CDS 145460 - 145726 /note=- (BLAST) 100 coverage on lipoprotein: /note= UDL16860 lipoprotein [Arthrobacter phage Atuin] 73.0337 79.7753 100% CDS 145723 - 145974 /note=100% coverage for lipoprotein in BLAST /note=PF25682.1 Phage_VG64 ; Mycobacterium phage VG64 82.6 95.1807 1 89 1 80 8.5 /note= UDL16861 lipoprotein [Arthrobacter phage Atuin] 40.4762 58.3333 91.5663 49 1 77 1 76 1 3.11694e-14 CDS 146138 - 146851 /note=strong evidence for terminase /note=- (Phagesbd function) terminase, large subunit 265098 BB2 3 100 /note=- (HHPRED) cd08050 TAF6C; C-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6). This model characterizes the carboxy (C)-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6), which is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. 36.8 39.6624 107 182 139 233 540 /note=- (BLAST) UDL16862 hypothetical protein SEA_ATUIN_199 [Arthrobacter phage Atuin] 34.4828 52.1552 99.5781 121 1 230 1 236 9 4.5336e-23 CDS 146866 - 147090 /note=strong evidence of hypothetical protein /note=- (Phagesdb function) tape measure protein 6087 EN 8 100 /note=- (HHPRED) 2JPI_A Hypothetical protein; alpha-Helix/Beta-sheet, Structural Genomics, Ontario Centre for Structural Proteomics, OCSP; NMR {Pseudomonas aeruginosa} 48.6 95.9459 15 98 1 72 180 /note=- (BLAST) UDL16863 No 2024-03-04 hypothetical protein SEA_ATUIN_200 [Arthrobacter phage Atuin] 84.507 94.3662 100 CDS 147100 - 147624 /note=100 coverage for both protease and hypothetical protein in BLAST. /note=- (HHPRED) 5OVU_B BETA-PROTEOBACTERIA PROTEASOME HOMOLOGUE; Protein Degradation, beta-proteobacteria proteasome homologue, hydrolase; HET: MLI; 2.1A {Cupriavidus metallidurans} 99.9 98.2759 1 191 2 173 1.6e-21 /note=note: lots of evidence here /note=- (BLAST) XLG27426 protease [Arthrobacter phage Pitbull] 52.5714 69.1429 98.8506 /note=note: lots of evidence here CDS 147624 - 147815 /note=- (HHPRED) PF13150.11 TraL_transposon ; Conjugative transposon protein TraL 95.2 61.9048 /note=note: relatively weak evidence /note=- (BLAST) UDL16864 membrane protein [Arthrobacter phage Atuin] 61.9048 82.5397 100 /note=note: coverage strong? no other evidence to support though CDS complement (147852 - 149306) /note=strong evidence for terminase /note=- (PHagesdb function frequency) evidence of terminase subunits /note=- (HHPRED) 8DGC_E Terminase, large subunit; phage defense, pattern-recognition receptor, nlr, stand, atpase, ANTIVIRAL PROTEIN; HET: ATP;{Salmonella enterica} 100 89.0496% (Coverage) /note=- (BLAST) UDL16596 Yes 2024-03-04 terminase terminase [Arthrobacter phage Atuin] 91.0569 94.5122 99.3802% (Coverage) CDS complement (149287 - 149559) /note=- (HHPRED) 3F0N_B MEVALONATE PYROPHOSPHATE DECARBOXYLASE; CHOLESTEROL BIOSYNTHESIS, LIPID SYNTHESIS, LYASE, STEROID BIOSYNTHESIS, STEROL BIOSYNTHESIS, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC ; HET: PO4; 1.9A {Mus musculus} SCOP: d.58.26.0, d.14.1.0 79.3 98.8889% (Coverage) /note=- (BLAST) UDL16597 hypothetical protein SEA_ATUIN_203 [Arthrobacter phage Atuin] 60 75 88.8889% (coverage) CDS 149616 - 150074 /note=tape measure protein? /note=- (HHPRED) 7NRC_A GCN1; Ribosome, Disome, GCN1, Translation, GAAC, ISR, Rbg2, Gir2; HET: 5CT; 3.9A {Saccharomyces cerevisiae S288C} 21.8 90.1316% (Coverage) /note=- (BLAST) UDL16598 hypothetical protein SEA_ATUIN_204 [Arthrobacter phage Atuin] 33.7423 49.0798 96.7105% (Coverage) CDS 150319 - 150549 /note=tape measure protein /note=not much evidence /note=- (HHPRED) 7P54_A Protein tweety homolog 2; Membrane protein, lipid metabolism, lipid transport; HET: NAG;{Homo sapiens} 82.1 97.3684% (coverage) CDS 150549 - 150650 /note=strong evidence of hypothetical protein with BLAST: /note=UDL16601 hypothetical protein SEA_ATUIN_207 [Arthrobacter phage Atuin] 65.625 84.375 100% (Coverage) CDS 150598 - 150942 /note=evidence of hypothetical protein from BLAST: /note=UDL16602 hypothetical protein SEA_ATUIN_208 [Arthrobacter phage Atuin] 29.4643 49.1071 89.4737% (coverage) /note=rest of evidence are relatively weak CDS 150987 - 151148 /note=- (BLAST) UDL16603 membrane protein [Arthrobacter phage Atuin] 46.2963 66.6667 98.1132% (coverage) /note=- (HHPRED) /note=evidence of hypothetical proteins with strong coverages /note=PF14965.11 DUF5345 ; Family of unknown function (DUF5345) 45.1 98.1132% (coverage) /note=PF11847.13 DUF2243 ; Predicted membrane protein (DUF2243) 31.6 96.2264% (coverage) CDS 151300 - 151581 /note=strongest evidence shown hypothetical protein in BLAST: /note=UDL16605 hypothetical protein SEA_ATUIN_211 [Arthrobacter phage Atuin] 24.2105 45.2632 82.7957% (coverage) CDS 151593 - 151862 /note=strong coverage of hypothetical protein in BLAST: /note=UDL16606 hypothetical protein SEA_ATUIN_212 [Arthrobacter phage Atuin] 33.3333 50 98.8764% (coverage) CDS 152202 - 152567 /note=hypothetical protein SEA_ATUIN_216 [Arthrobacter phage Atuin] 57.377 65.5738 99.1736 CDS 152564 - 152800 /note=hypothetical terminase from Phagesdb Function Freq /note=Tox-REase-5 ; Restriction endonuclease fold toxin 5 from HHPRED CDS 152800 - 153243 /note=phagesdb Function Freq 100% /note=UDL16612 73% coverage; hypothetical protein SEA_ATUIN_218 [Arthrobacter phage Atuin] accession, subcluster UNK 100% frequency CDS 153234 - 153539 /note=DUF7316 ; Family of unknown function (DUF7316) (Probability 90.5%, Coverage 11.88%) /note=Referenced HHPRED CDS 153536 - 153820 /note=hypothetical protein SEA_ATUIN_219 [Arthrobacter phage Atuin] /note= /note=NCBI and HHPRED CDS 153789 - 153989 /note=hypothetical protein SEA_ATUIN_221 [Arthrobacter phage Atuin] 55.1724 67.2414 83.3333 CDS 153983 - 154705 /note=hypothetical protein SEA_ATUIN_224 [Arthrobacter phage Atuin] 28.4722 46.5278 93.3333 CDS 154794 - 155192 /note=Phagesdb Function Frequency confirms hydrolase /note=DivIC ; Septum formation initiator 85.2% CDS 155226 - 155477 /note=hypothetical protein SEA_ATUIN_226 [Arthrobacter phage Atuin] 96% coverage CDS 155688 - 155897 /note=BBS2_CtH ; BBS2 C-terminal helix bundle probability 71.7 % coverage ~ 30% CDS 156481 - 156972 /note=lysin a 86% frequency /note=hypothetical protein SEA_ATUIN_230 [Arthrobacter phage Atuin] CDS 157153 - 157467 /note=Start chosen 157153; Glimmer and Genemark agree; Starterator start #??; Z-score 2.991; Gap -29 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred matches below strong threshold; CDD no hits CDS 157533 - 157697 /note=Start chosen 157533; Glimmer and Genemark agree; Starterator start #??; Z-score 2.613; Gap 65 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred match to PF19297.4 (94.2% probability, 96.2963% coverage, 0.6 e-val); CDD no hits CDS 157697 - 157900 /note=Start chosen 157697; Glimmer and Genemark agree; Starterator start #??; Z-score 2.562; Gap -1 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred matches below strong threshold; CDD no hits CDS 157891 - 158073 /note=Start chosen 157891; Glimmer and Genemark agree; Starterator start #??; Z-score 2.942; Gap -10 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred matches below strong threshold; CDD no hits CDS 158082 - 158318 /note=Start chosen 158082; No Glimmer start so checked GeneMark signals, Genemark start calls 158082; Starterator start #??; Z-score 3.153; Gap 8 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold); CDD no matches; CDS 158360 - 158626 /note=Start chosen 158360; No Glimmer start so checked GeneMark signals, Genemark start calls 158360; Starterator start #??; Z-score 2.913; Gap 41 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold; CDD no matches; CDS complement (158117 - 158632) /note=Start chosen 158632; Glimmer start calls 158632, No GeneMark start called so looked at GeneMark signals; Starterator start #??; Z-score 1.635; Gap 27 bp; /note=PhagesDB BLAST top hit is unknown function; HHpred no matches above threshold; CDD no matches; CDS 158660 - 159028 /note=Start chosen 158660; Glimmer and Genemark agree; Starterator start #??; Z-score 3.248; Gap 27 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred match to PF12957.13 (99.8% probability, 92.6229% coverage, 3e-17 e-value); CDD no matches above threshold; CDS 159103 - 159411 /note=Start chosen 159103; Glimmer and Genemark agree; Starterator start #??; Z-score 1.636; Gap 74 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred match to PF07116.16 (98.5% probability, 86.2745% coverage, 0.0000046 e-value); CDD no matches above threshold; CDS 159468 - 159686 /note=Start chosen 159468; Glimmer and Genemark agree; Starterator start #??; Z-score 2.737; Gap 56 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold; CDD no matches; /note= /note=Hypothetical Protein OBI_RACECAR_322 [Arthrobacter phage Racecar] >gb|QFG12790.1| hypothetical protein PBI_MIMI_317 [Arthrobacter phage Mimi] >gb|WWQ87641.1| Hypothetical Protein OBI_RACECAR_33 [Arthrobacter phage Racecar] >gb|WWQ87728.1| hypothetical protein PBI_MIMI_32 [Arthrobacter phage Mimi] 67.6056 77.4648 100 CDS 159683 - 159877 /note=Start chosen 159683; Glimmer and Genemark agree; Starterator start #??; Z-score 2.508; Gap -4 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold; CDD no matches; CDS 159944 - 160192 /note=Start chosen 159944; Glimmer and Genemark agree; Starterator start #??; Z-score 3.248; Gap 66 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold; CDD no matches; CDS 160189 - 160458 /note=Start chosen 160189; No Glimmer start so checked GeneMark signals, Genemark start calls 160189; Starterator start #??; Z-score 1.55; Gap -4 bp; /note=PhagesDB BLAST top hits mostly unknown functions, one hit for major tail protein, one hit for tail tube; HHpred match to PF19679.4 (99.8% probability, 96.6292% coverage, 1.1e-17 e-value); CDD no matches above threshold; CDS 160455 - 160724 /note=Start chosen 160455; Glimmer and Genemark agree; Starterator start #??; Z-score 2.713; Gap -4 bp; /note=PhagesDB BLAST no named functions in top hits; HHpredno matches above threshold; CDD no matches; CDS 160800 - 161456 /note=Start chosen 160800; Glimmer and Genemark agree; Starterator start #??; Z-score 2.737; Gap 75 bp; /note=PhagesDB BLAST no named functions in top hits; HHpred no matches above threshold; CDD no matches; CDS 161441 - 162082 /note=Gene Stop at 162082. Start Location called at 161441 by Glimmer, Genemark called at 161465. Both locations capture full coding potential according to Genemark Gene Activity Sheet. Start Location 161465 has Starterator manual annotations. Along with a higher Z Score and better Gap. Selecting 161465 as the start for this gene. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 162082 - 162303 /note=Gene Stop at 162303. Glimmer call at 162160, with Genemark call at 162082. Both calls fully capture coding potential from Genemark Gene Activity Sheet. No Starterator report due to Genes Status as an Orpham. Genemark Start of 162082 selected due to higher Z Score and Better Gap. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 162303 - 162548 /note=Gene Stop at 162548. Glimmer and Genemark call start at 162303. Fully Captures coding potential according to Genemark Gene Activity Sheet. Selected start has two manual annotations on Starterator. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 162618 - 162806 /note=Gene Stop at 162806. Glimmer and Genemark call start at 162618. Fully Captures coding potential according to Genemark Gene Activity Sheet. No manual annotations in the Starterator. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 162799 - 163353 /note=Gene Stop at 163,353. Glimmer and Genemark call start at 162,799. Coding potential is fully captured according to Genemark Gene Activity Sheet. Starterator has no manual annotations for this start. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 163350 - 163466 /note=Gene Stop at 163,466. Glimmer and Genemark call start at 163350. Gene Coding Potential minimal on Genemark Gene Activity Sheet. Starterator report not available due to gene status as Orpham. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 163463 - 163657 /note=Gene Stop at 163657. Gene start called at 163463 by Glimmer and Genemark. Selected Start has one manual annotation. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 163668 - 165281 /note=Gene Stop at 165,281. Glimmer and Genemark call start at 163,668. Called Start has 4 manual annotations on Starterator. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 165274 - 165486 /note=Gene Stop at 165,486. Glimmer and Genemark call start at 165,274. Starterator has no manual annotations for this start. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 165483 - 165779 /note=Gene Stop at 165,779. Glimmer and Genemark called start at 165,483. Coding potential is fully captured according to Genemark Gene Activity Sheet. Starterator report not available due to gene status as Orpham. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 165838 - 166365 /note=Gene Stop at 166,365. Glimmer and Genemark call start at 165,838. Starterator has no manual annotations for this start. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 166358 - 166630 /note=Gene Stop at 166,630. Glimmer and Genemark call start at 166,358. Starterator has 3 manual annotations for this start. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 166709 - 166993 /note=Gene Stop at 166,993. Glimmer and Genemark call start at 166,709. Starterator has 6 manual annotations for this start. Coding potential is fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 166974 - 167186 /note=Gene Stop at 167,186. Glimmer and Genemark call start 166,974. Starterator has no manual annotations for this start. Coding Potential fully captured according to Genemark Gene Activity Sheet. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 167226 - 167618 /note=Gene Stop at 167,618. Glimmer and Genemark call start at 167,226. Coding Potential fully captured according to Genemark Gene Activity Sheet. Starterator has no manual annotations for this start. Blast results show no significant similarities with any genes of clustermates or other known genes. CDS 167615 - 167977 /note=BLAST: /note=hypothetical protein SEA_ATUIN_261 [Arthrobacter phage Atuin] /note=% identity: 39.3258 /note=% aligned: 50.5618 /note=% coverage: 65.8333 /note=e-value: 1.89291e-12 /note= /note=HHpred: /note=d.165.1.1 (A:) automated matches {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} | CLASS: Alpha and beta proteins (a+b), FOLD: Ribosome inactivating proteins (RIP), SUPFAM: Ribosome inactivating proteins (RIP), FAM: Plant cytotoxins /note=proability:72.2 /note=%coverage:55 CDS 168038 - 168373 /note=HHpred: /note=YorP ; YorP protein /note=Probability: 97.8 /note=% coverage: 49.5495 CDS 168370 - 168663 /note=BLAST: /note=MULTISPECIES: hypothetical protein [Microbacterium] >gb|EPD84113.1| hypothetical protein HMPREF1529_02153 [Microbacterium sp. oral taxon 186 str. F0373] /note=%coverage:93.8144 /note=%identity:38.2022 /note=%aligned:56.1798 /note= /note=HHPRED: /note=d.348.1.1 (A:75-126) Uncharacterized protein YegP {Escherichia coli [TaxId: 562]} | CLASS: Alpha and beta proteins (a+b), FOLD: YegP-like, SUPFAM: YegP-like, FAM: YegP-like /note=%coverage:35.0515 /note=probability:42.3 CDS 168664 - 168963 /note=BLAST: /note=hypothetical protein SEA_ATUIN_279 [Arthrobacter phage Atuin] /note=%identity:53.9216 /note=%aligned:66.6667 /note=%coverage:92.9293 /note=evalue:5.22209e-28 /note= /note=HHpred: /note=SP-RING_ZMIZ2; SP-RING finger found in zinc finger MIZ domain-containing protein 2 (Zmiz2) and similar proteins. /note=%coverage:11.1111 /note=probability:85.2 CDS 168960 - 169268 /note=HHpred: /note=VinK_C ; VinK acyltransferase small domain /note=%coverage:34.3137 /note=probability:37.2 CDS 169276 - 169626 /note=BLAST: /note=hypothetical protein SEA_ATUIN_281 [Arthrobacter phage Atuin] /note=%identity:60.5042 /note=%aligned:69.7479 /note=%coverage:81.8966 /note= /note=HHpred: /note=RIBOSOME RECYCLING FACTOR; TRANSLATION, RIBOSOME, HINGE VARIABILITY; 2.6A {Thermus thermophilus} SCOP: d.67.3.1 /note=probability:75.8 /note=%coverage:57.7586 CDS 169623 - 169949 /note=HHpred: /note=NifU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], ISC, IscU, NifU, asymmetric trimer, three conserved Cys, BIOSYNTHETIC PROTEIN; HET: SO4; 2.3A {Aquifex aeolicus} SCOP: d.224.1.0 /note=probability:81.1 /note=%coverage:54.6296 /note= /note=BLAST: /note=hypothetical protein [Micromonospora aurantiaca (nom. illeg.)] >gb|MEV7264695.1| hypothetical protein [Micromonospora aurantiaca (nom. illeg.)] /note=%identity:22.0588 /note=%aligned:27.9412 /note=%coverage56.4815 CDS 169975 - 170157 /note=HHpred: /note=Ryanodine receptor 3; Ryanodine Receptor Calcium Release Channel, METAL TRANSPORT; HET: SO4, GOL; 1.75A {Homo sapiens} /note=probability:62 /note=%coverage:75 /note= /note=BLAST: /note=hypothetical protein [Arthrobacter sp. UYCo732] >gb|MET4143854.1| hypothetical protein [Arthrobacter sp. UYCo732] /note=%identity:10.3774 /note=%aligned:12.7358 /note=%coverage:75 CDS 170154 - 170558 /note=HHpred: /note=Phage_g100 ; Phage g100-like protein /note=probability:59.9 /note=%coverage:79.1045 /note= /note=BLAST: /note=hypothetical protein SEA_TALIA1610_269 [Arthrobacter phage Talia1610] /note=%identity:16.0156 /note=%aligned:22.2656 /note=%coverage:81.3433 CDS 170551 - 170886 /note=HHpred: /note=a.97.1.0 (A:299-465) automated matches {Stenotrophomonas maltophilia [TaxId: 522373]} | CLASS: All alpha proteins, FOLD: An anticodon-binding domain of class I aminoacyl-tRNA synthetases, SUPFAM: An anticodon-binding domain of class I aminoacyl-tRNA synthetases, FAM: automated matches /note=Probability: 59.5 /note=%coverage: 54.0541 CDS 170896 - 171408 /note=HHpred: /note=DUF7769 ; Domain of unknown function (DUF7769) /note=Probability: 55.2 /note=%coverage:20.5882 CDS 171405 - 171704 /note=HHpred: /note=Cell division protein FtsL; FtsWIQLB, Gram-negative bacteria, membrane protein, divisome, CELL CYCLE;{Pseudomonas aeruginosa} /note=probability:94.5 /note=%coverage: 57.5758 /note= /note=BLAST: /note=hypothetical protein SEA_ATUIN_272 [Arthrobacter phage Atuin] /note=%identity:33.3333 /note=%aligned:56.9892 /note=%coverage:86.8687 CDS 171781 - 172005 /note=HHpred: /note=LNG binder; Cobra toxin, protein design, diffusion, deep learning, DE NOVO PROTEIN, DE NOVO PROTEIN-TOXIN complex; 2.68A {synthetic construct} /note=probability:50.4 /note=%coverage:58.1081 CDS 172008 - 172460 /note=HHpred: /note=VEG ; Biofilm formation stimulator VEG /note=probability74.5 /note=%coverage:28.6667 /note= /note=BLAST: /note=protein SEA_ATUIN_288 [Arthrobacter phage Atuin] /note=%identity:40.4255 /note=%aligned:57.4468 /note=%coverage:60 CDS 172474 - 172902 /note=HHpred FCH_F-BAR; The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Probabilty:46 Coverage:28.169% /note=Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. /note=NCBI Blast hypothetical protein SEA_ATUIN_286 [Arthrobacter phage Atuin] Coverage:25.3521% Identity:36.6197% Aligned:39.4366 CDS 172902 - 173321 /note=HHpred DUF3039 ; Protein of unknown function probablty:71.3 Coverage:12.9496 /note=NCIB Blast hypothetical protein [Nocardioides sp. Leaf285] >gb|KQP63031.1| hypothetical protein ASF47_18645 [Nocardioides sp. Leaf285] Identity:35.8025 Aligned:46.9136 Coverage:51.0791 CDS 173361 - 173651 /note=HHpred VEG ; Biofilm formation stimulator VEG Probability: 86.9 Coverage: 59.375 /note=NCIB Blast hypothetical protein SEA_ATUIN_288 [Arthrobacter phage Atuin] Identity:76.5957 Aligned:87.234 Coverage:98.9583 CDS 174205 - 174603 /note=Conserved membrane protein; S-layer, dimer, N-glycosylation, STRUCTURAL PROTEIN;{Sulfolobus acidocaldarius DSM 639} Probability:94.3 Coverage:61.3636% /note=hypothetical protein SEA_ATUIN_290 [Arthrobacter phage Atuin] Identity:40.4255 Aligned:56.7376 Coverage:100% CDS 174600 - 175055 /note=HHpred Merozoite surface protein-1; Merozoite surface protein 1, malaria, Plasmodium falciparum, MSP-1, p190, GPI-anchored membrane protein, MEMBRANE PROTEIN; 3.1A {Plasmodium falciparum} Probabiltiy:75.2 Coverage:81.457% /note=NCBI hypothetical protein SEA_ATUIN_291 [Arthrobacter phage Atuin] Identity:31.5068 Aligned:45.2055 Probabilty:78.8079% CDS 175058 - 175339 /note=Hhpred-Hypothetical UPF0134 protein MPN010; DUF16, MPN010, hypothetical protein, coiled-coil, stutter, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center; 1.8A {Mycoplasma pneumoniae} SCOP: h.1.30.1 Probability:73.6 Coverage:32.2581% CDS 175339 - 175674 /note=HHpred-HalD ; Halogenase D Probailyty:87.1 Coverage:36.036% /note=NCBI-hypothetical protein SEA_ATUIN_293 [Arthrobacter phage Atuin] Identity:53.7736% Aligned:66.0377% Coverage:91.8919% CDS 175674 - 176192 /note=HHPRED-subunit-f; ATP synthase, mitochondria, MEMBRANE PROTEIN; HET: MG, AME, LMT, Q7G, UTP, CDL, ATP, PC1, ADP, PEE; 3.2A {Trypanosoma brucei brucei} Probabitly: 67.8 Coverage:19.7674% /note=NCBI-hypothetical protein SEA_TALIA1610_278 [Arthrobacter phage Talia1610] Identity:31.1765% Aligned:51.7647% Coverage:97.6744% CDS 176158 - 176370 /note=HHpred-Major facilitator superfamily domain-containing protein 1; MFS transporter, MFSD family, nutrition transporter, lysosomal transporter, outward open, MEMBRANE PROTEIN; HET: NAG;{Mus musculus} Probabilityy:89.7 Coverage:70% /note=NCBI-no data CDS 176367 - 176618 /note=HHpred-Photosystem I reaction center subunit VIII PsaI; Green alga, PSI, Coelastrella, membrane protein, Cryo-EM, PHOTOSYNTHESIS; HET: SQD, DGA, CHL, LMG, CL0, SPH, OCA, C7Z, SF4, 3PH, CLA, PQN, LHG, DGD, NKP, T7X, BCR, DAO, LMT, LPX, RRX, LUT;{Coelastrella} Probability:82.1 Coverage:22.8916% /note=NCBI-hypothetical protein SEA_ATUIN_295 [Arthrobacter phage Atuin] Identity:57.3171% Aligned:78.0488% Coverage:95.1807% CDS 176781 - 177110 /note=HHpred-FYDLN_acid ; Protein of unknown function (FYDLN_acid) Probability:49.3 Coverage:49.5413% /note=NCBI-hypothetical protein [Pseudarthrobacter cellobiosi] >gb|MCO4257357.1| hypothetical protein [Pseudarthrobacter cellobiosi] Identity: 34.375% Aligned:44.7917% Coverage:88.9908% /note=hypothetical protein [Paenarthrobacter nicotinovorans] >gb|MDQ0100490.1| hypothetical protein [Paenarthrobacter nicotinovorans] Identity:30% Aligned:47% Coverage:88.9908% CDS 177161 - 177649 /note=HHpred-DUF4537 ; Domain of unknown function (DUF4537) Probability:86.2 Coverage:67.284% /note=No NCBI blast CDS 177646 - 177867 /note=HHpred-DUF2759 ; Protein of unknown function (DUF2759) Probability:88.8 Coverage:58.9041% /note=no NCBI blast CDS 177903 - 178079 /note=HHpred-4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family; membrane protein, lipid glycosyltransferase, zinc, GT-C fold, Structural Genomics, PSI-Biology, New York Consortium on Membrane Protein; HET: DSL, MPG, PO4, EPE, PC; 2.7A {Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)} Probability:72.6 coverage:94.8276% /note=No NCBI blast CDS 178060 - 178398 /note=HHpred-Isoform ATE1-2 of Arginyl-tRNA--protein transferase 1; arginylation, ATE1, apo, TRANSFERASE;{Homo sapiens} Probability:19.2 Coverage:23.2143% CDS 178865 - 179119 /note=hypothetical protein SEA_ATUIN_1 [Arthrobacter phage Atuin] /note=identity 29.9517 /note=aligned 34.7826 /note=coverage 94.0476 /note=DUF1786 ; Putative pyruvate format-lyase activating enzyme (DUF1786) /note=probability 33.9 /note=coverage 77.381 CDS 179124 - 179249 /note=RMtype1_S_MmaC5ORF1169P_TRD1-CR1_like; Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Methanococcus maripaludis C5 S subunit (S. /note=probability 87.7 /note=coverage 88.2353 CDS 179246 - 179521 /note=zf-Tbcl_FmdE ; FmdE treble clef zinc finger /note=probability 87.8 /note=coverage 26.3736 /note=c.95.1.0 (A:186-350) automated matches {Micrococcus luteus [TaxId: 465515]} | CLASS: Alpha and beta proteins (a/b), FOLD: Thiolase-like, SUPFAM: Thiolase-like, FAM: automated matches /note=probability 60.8 /note=coverage 92.3077 CDS complement (179707 - 179874) /note=4-nitrophenylphosphatase; TM1742, 4-nitrophenylphosphatase, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, HYDROLASE; HET: MSE; 2.4A {Thermotoga maritima} SCOP: l.1.1.1, c.108.1.14 /note=probability 29.3 /note=coverage 98.1818 CDS complement (180007 - 181509) /note=hypothetical protein SEA_ATUIN_304 [Arthrobacter phage Atuin] >gb|WWQ87550.1| hypothetical protein SEA_ATUIN_4 [Arthrobacter phage Atuin] /note=identity 87.4 /note=aligned 93.2 /note=coverage 99.8 /note=DndB ; DNA-sulfur modification-associated /note=probability 100 /note=coverage 72.6 /note=DGQHR motif containing domain. Uncharacterized diverse domain family with conserved DGQHR motif, in addition to QR and FXXXN motifs. Some proteins have been identified as parts of DNA phosphorothioation systems. Related to dndB, which acts in the regulation of DNA modifications, including DNA phosphorothioation. These proteins show similarity to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, and other members of the ParB/Srx superfamily. /note=identity 27.0742 /note=aligned 41.4847 /note=DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif. /note=identity 18.1009 /note=aligned 35.905 /note=coverage 64.4 CDS 181753 - 181965 /note=b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | CLASS: All beta proteins, FOLD: SH3-like barrel, SUPFAM: Translation proteins SH3-like domain, FAM: N-utilization substance G protein NusG, C-terminal domain /note=probability 98.7 /note=coverage 64.2857 /note=30S ribosomal protein S4e; 30S ribosomal protein S4e rps4e RS4E_THEAC TaR28 NESG, Structural Genomics, PSI-2, Protein; HET: MSE; 1.75A {Thermoplasma acidophilum} /note=probability 54.7 /note=coverage 98.5714 /note=KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54. /note=identity 35.7143 /note=aligned 57.1429 /note=KOW: an acronym for the authors` surnames (Kyrpides, Ouzounis and Woese). KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The KOW motif contains an invariants glycine residue and comprises alternating blocks of hydrophilic and hydrophobic residues. /note=identity 26.5306 /note=aligned 40.8163 /note=coverage 44.2857 CDS 182100 - 182444 /note=hypothetical protein SEA_ATUIN_305 [Arthrobacter phage Atuin] >gb|WWQ87551.1| hypothetical protein SEA_ATUIN_5 [Arthrobacter phage Atuin] /note=identity 76.5217 /note=aligned 83.4783 /note=hypothetical protein; Dimer, Hypothetical Protein, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN; HET: MSE; 2.35A {Bacillus cereus} SCOP: d.166.1.6, l.1.1.1 /note=probability 20.4 /note=coverage 39.4737 /note=Uncharacterized protein AcrF1; anti-CRISPR proteins, Csy complex, Type I-F CRISPR/Cas system, IMMUNE SYSTEM-RNA complex;{Pseudomonas aeruginosa (strain UCBPP-PA14)} /note=probability 90.3 /note=coverage 17.5439 CDS 182503 - 182970 /note=hypothetical protein [Arthrobacter sp.] /note=identity 32.3944 /note=aligned 46.4789 /note=hypothetical protein [Arthrobacter mobilis] >gb|NKX56933.1| hypothetical protein [Arthrobacter mobilis] identity 29.2683 /note=aligned 47.9675 /note=coverage 91.7293 /note=TraB; Symmetry alteration, Symmetry mismatch, Drug resistance, Type IV secretion system (T4SS), STRUCTURAL PROTEIN; 2.95A {Salmonella typhi} /note=probability 78.7 /note=coverage 71.4286 /note=Peroxisomal membrane protein PEX14; Peroxisomal transport, Import, PEX, TRANSPORT PROTEIN, PROTEIN TRANSPORT;{Trypanosoma cruzi} /note=probability 56 /note=coverage 89.4737 CDS 183037 - 183390 /note=hypothetical protein SEA_ATUIN_308 [Arthrobacter phage Atuin] >gb|WWQ87554.1| hypothetical protein SEA_ATUIN_8 [Arthrobacter phage Atuin] /note=identity 82.0513 /note=aligned 86.3248 /note=Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 2.14A {Candidatus Thorarchaeota archaeon SMTZ1-45} /note=probability 53.3 /note=coverage 21.3675 /note=Shikimate dehydrogenase; shikimate pathway, OXIDOREDUCTASE; HET: SO4; 1.45A {Thermotoga maritima} /note=probability 37.4 /note=coverage 58.1197 /note=insect luciferase, similar to plant 4-coumarate: CoA ligases. This family contains insect firefly luciferases that share significant sequence similarity to plant 4-coumarate:coenzyme A ligases, despite their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. identity 3.7594 /note=coverage 5.45113 CDS 183420 - 183722 /note=GM130_C ; GM130 C-terminal binding motif /note=probability 40.8 /note=coverage 23 /note=a.136.1.1 (A:) Hypothetical protein NMB1681 {Neisseria meningitidis [TaxId: 487]} | CLASS: All alpha proteins, FOLD: FinO-like, SUPFAM: FinO-like, FAM: FinO-like /note=probability 25.2 /note=coverage 39 CDS 183805 - 184038 /note=d.157.1.0 (A:) automated matches {Serratia marcescens [TaxId: 615]} | CLASS: Alpha and beta proteins (a+b), FOLD: Metallo-hydrolase/oxidoreductase, SUPFAM: Metallo-hydrolase/oxidoreductase, FAM: automated matches /note=probability 65.2 /note=coverage 63.6364 /note=Maltose-binding periplasmic protein,Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; HCN channels, cyclic nucleotide regulated channels, cyclic nucleotide binding domain, TRANSPORT PROTEIN; HET: GLC, NO3; 2.042A {Escherichia coli O157:H7} /note=probability 29.2 /note=coverage 85.7143 CDS 184048 - 184242 /note=PilZNR ; Flagellar protein YcgR /note=probability 70.2 /note=coverage 51.5625 /note=NURA; HYDROLASE, DNA REPAIR, REPLICATION; HET: MSE; 2.5A {SULFOLOBUS SOLFATARICUS} /note=probability 22.6 /note=coverage 92.1875 CDS complement (183811 - 184245) /note=tau-AnmTx Ueq 12-1; PROTEIN, sea anemone, antimicrobial peptide, TRPA1 potentiator, membrane protein, toxin; NMR {Urticina eques} /note=probability 56.7 /note=coverage 5.55556 /note=Diacylglycerol kinase catalytic domain protein; Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Type IV effectors ortholog, TRANSFERASE; HET: AMP, MSE; 2.05A {Enterococcus faecalis} SCOP: e.52.1.0, l.1.1.1 /note=probability 23.4 /note=coverage 59.0278 CDS 184322 - 184723 /note=hypothetical protein [uncultured Alistipes sp.] /note=identity 51.25 /note=aligned 63.75 /note=MAG: hypothetical protein EKK58_09205 [Candidatus Babelota bacterium] /note=identity 25.8993 /note=aligned 38.8489 /note=probability 71.4286 /note=Uncharacterized protein yjdK; RNase, biofilm, UNKNOWN FUNCTION; NMR {Escherichia coli} /note=probability 62.2 /note=coverage 18.797 /note=Transcription initiation factor IIE subunit beta; Pre-initiation complex, TRANSCRIPTION; HET: ZN, ADP; 2.9A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} /note=probability /note=coverage 24.8 76.6917 CDS 184805 - 185038 /note=hypothetical protein SEA_ATUIN_12 [Arthrobacter phage Atuin] /note=identity 87.013 /note=aligned 89.6104 /note=hypothetical protein SEA_ATUIN_312 [Arthrobacter phage Atuin] /note=identity 84.375 /note=aligned 87.5 /note=coverage 100 /note=DUF7203 ; Family of unknown function (DUF7203) /note=probability 62.9 /note=coverage 12.5 /note=PIN_YqxD-like; LabA-like PIN domain of uncharacterized Bacillus subtilis YqxD and related proteins. probability 20.1 /note=coverage 87.5 CDS 185117 - 185596 /note=Start 185,118 chosen; Glimmer & GeneMark agree; Starterator supports Start 2 (consensus). Z-score >2 , gap 78 bp, All GM coding potential covered. PhagesDB BLAST no named functions; HHpred and NCBI Blast matches below strong threshold. hypothetical protein SEA_ATUIN_13 [Arthrobacter phage Atuin] >gb|WWQ87565.1| hypothetical protein SEA_ATUIN_313 [Arthrobacter phage Atuin] 24.581% identity, 31.2849% aligned, 55.9748% coverage. CDS 185683 - 185964 /note=Start 185683 chosen; Glimmer & GeneMark agree. Z-score >2, gap 86 bp, All GM coding potential covered. PhagesDB BLAST unknown function but phagesdb function frequency possible minor tail protein or capsid protein; HHpred uninformitive; NCBI Blast: nonexistent. CDS 185961 - 186161 /note=Start 185961 chosen; Glimmer & GeneMark agree;Z-score> 2, gap -4 bp. PhagesDB BLAST no named functions; HHpred matches a possible protein kinase; NCBI Blast Hypothetical protein-SEA_ATUIN_13 [Arthrobacter phage Atuin] with 81.8182% coverage 25.1397 % identity 27.933% aligned. CDS 186177 - 186683 /note=Start 186345 chosen; Glimmer & GeneMark do not agree;Z-score> 2, gap 183 bp. PhagesDB BLAST no named functions; HHpred matches hypothetical protein; Phagesdb function frequency possible Possible major tail protein. NCBI Blast Hypothetical protein SEA_TALIA1610_34 [Arthrobacter phage Talia1610] with 36.7925% identity 56.6038% aligned 62.5% coverage. CDS 186852 - 187349 /note=Start 186852 chosen; Glimmer & GeneMark agree;Z-score> 2, gap 168 bp. PhagesDB BLAST no named functions; HHpred matches CAA_C ; CCA-adding enzyme, C-terminal domain~ 75% coverage; Phagesdb function frequency possible tape measure protein. NCBI Blast MAG: hypothetical protein DCC58_16935 [Chloroflexota bacterium] 76.9697% coverage 30.6569 % identity, 42.3358% aligned. Z score > 2. Possible tape measure protein. CDS 187440 - 187667 /note=Start 187,440 chosen; Glimmer & GeneMark agree; Z-score> 2, gap 90 bp. PhagesDB BLAST no named functions; HHpred matches for unknown proetins; NCBI Blast unknown. CDS 187715 - 188128 /note=Start 187715 chosen; Glimmer & GeneMark agree;Z-score> 2, gap 47 bp. PhagesDB BLAST no named functions but Phagesdb Function frequency tail assembly chaperone 91% frequency; HHpred matches putative NTP pyrophosphohydrolase; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: MSE; 1.78A {Exiguobacterium sibiricum 255-15}~ 85% coverage ; NCBI Blast Hypothetical protein SEA_ATUIN_333 [Arthrobacter phage Atuin] >gb|WWQ87557.1| hypothetical protein SEA_ATUIN_33 [Arthrobacter phage Atuin]. CDS 188184 - 188381 /note=Start 188,184 chosen; Glimmer start and GeneMark agree. Z-score>2, gap 40 bp, All GM coding potential covered. PhagesDB BLAST no named functions; NCBI Blast Hypothetical protein SEA_ATUIN_18 [Arthrobacter phage Atuin] >gb|WWQ87570.1| hypothetical protein SEA_ATUIN_318 [Arthrobacter phage Atuin] 70.5882% identity, 79.4118% aligned, 98.4615% coverage. CDS 188422 - 188724 /note=Start 188,422 chosen; Glimmer start and GeneMark agree. Z-score>2, gap 40 bp, All GM coding potential covered. PhagesDB BLAST no named functions; NCBI Blast hypothetical protein SEA_ATUIN_19 [Arthrobacter phage Atuin] >gb|WWQ87571.1| hypothetical protein SEA_ATUIN_319 [Arthrobacter phage Atuin] 43.5644% identity, 64.3564% aligned, 97% coverage. CDS 188816 - 189118 /note=Start 188,816 chosen; Glimmer start and GeneMark agree. Z-score>2, gap 91 bp, All GM coding potential covered. PhagesDB BLAST no named functions but function frequency with 100% polynucleotide kinase; NCBI Blast Hypothetical protein SEA_TALIA1610_30 [Arthrobacter phage Talia1610] >gb|XKC21719.1| hypothetical protein SEA_TALIA1610_316 [Arthrobacter phage Talia1610] 44.2308% identity, 58.6538% aligned, 90% coverage. CDS 189267 - 189542 /note=Start 189,267 chosen; No Glimmer start or score only GeneMark. Z-score>2, gap 148 bp, All GM coding potential covered. PhagesDB BLAST no named functions but function frequency with 100% integrase; NCBI Blast Hypothetical protein SEA_ATUIN_24 [Arthrobacter phage Atuin] >gb|WWQ87576.1| hypothetical protein SEA_ATUIN_324 [Arthrobacter phage Atuin] 46.6667% identity, 62.2222% aligned, 91.2088% coverage. CDS 189778 - 190218 /note=Start 189820 chosen; Glimmer & GeneMark do not agree;Z-score> 2, gap 124 bp. PhagesDB BLAST no named functions; NCBI Blast hypothetical protein SEA_ATUIN_25 [Arthrobacter phage Atuin] >gb|WWQ87577.1| hypothetical protein SEA_ATUIN_325 [Arthrobacter phage Atuin] CDS 190369 - 190587 /note=Start 190369 chosen; Glimmer & GeneMark agree. Z-score >2, gap 150 bp, PhagesDB BLAST no named functions; HHpred no matches not strong; NCBI Blast nonexistent. CDS 190645 - 190965 /note=Start 190,645 chosen; No Glimmer start or score only GeneMark. Z-score>2, gap 57 bp, All GM coding potential covered. PhagesDB BLAST no named functions but function frequency with 25% dna primase/helicase ; NCBI Blast hypothetical protein SEA_ATUIN_27 [Arthrobacter phage Atuin] >gb|WWQ87579.1| hypothetical protein SEA_ATUIN_327 [Arthrobacter phage Atuin] 63.6364% identity, 79.2208% aligned, 66.9811% coverage. CDS 190688 - 190903 /note=HHPRED: 0S ribosomal protein L14P; ribosome 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION, RIBOSOME; HET: NA, CL, OMG, UR3, MG, 1MA, PSU, PPU, SR, OMU; 2.2A {Haloarcula marismortui} SCOP: b.39.1.1 42.9 probability. Possible tail protein with Phagesdb. CDS complement (191104 - 191241) /note=NCBI Blast - hypothetical protein SEA_ATUIN_28 [Arthrobacter phage Atuin] >gb|WWQ87580.1| hypothetical protein SEA_ATUIN_328 [Arthrobacter phage Atuin] /note=62.2222% coverage, 47.7273% identity, 54.5455% aligned CDS complement (191277 - 191435) /note=Transcription elongation factor SPT5; KOW motif, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics; NMR {Homo sapiens} SCOP: l.1.1.1, b.34.5.5 /Probability 95.6%, Coverage 67.3077% /note=YorP ; YorP protein / Probability 93.9% Coverage 42.3077% /note=Transcription elongation factor SPT5; Transcription, Spt5, RNA processing, Transcription elongation.; HET: GOL, SO4, MSE; 1.601A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} / Probability 92.9% Coverage 65.3846% /note=b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} | CLASS: All beta proteins, FOLD: SH3-like barrel, SUPFAM: Translation proteins SH3-like domain, FAM: SPT5 KOW domain-like / Probability 92.4% Coverage 69.2308% CDS 191482 - 191976 /note=SpoVR_C ; SpoVR-like C-terminal domain / Probability 43.9%, Coverage 11.5854% CDS complement (191454 - 191669) /note=MtrF ; Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) / Coverage 52.1127%, Probability 18.9 CDS complement (191752 - 191970) /note=NCBI Blast- UDL16723 hypothetical protein SEA_ATUIN_330 [Arthrobacter phage Atuin] /Identity 74.6667%, Aligned 82.6667%, Coverage 100% CDS complement (192078 - 192323) /note=HHPRED- /note=DUF7767 ; Domain of unknown function (DUF7767) /Probability 74.8%, Coverage 76.5432%, E-value 12 /note=DUF4783 ; Domain of unknown function (DUF4783) /Probability 72.2%, Coverage 71.6049%, E-value 43 CDS complement (192418 - 192633) /note=SCOP_d2i2tp1 CLASS: All beta proteins, FOLD: SH3-like barrel, SUPFAM: Translation proteins SH3-like domain, FAM: Ribosomal protein L19 / Probability 56.3%, Coverage 28.169% CDS complement (192923 - 193105) /note=PF15899.11 BNR_6 ; BNR-Asp box repeat/ Probability 58%, Coverage 15% /note= PF24666.1 zf-C2H2_fungi_2 ; Fungal C2H2 zinc finger/ Probability 54.8%, Coverage 26.6667% CDS complement (193200 - 193415) /note=Phagesdb Function Frequency - kinase 143390 subcluster FC / Frequency 100% /note=HHPRED- PF16138.10 DUF4846 ; Domain of unknown function (4846) Probability 72.1%, Coverage 78.8732% CDS complement (193725 - 194342) /note=NCBI BLAST- /note=UDL16729 hypothetical protein SEA_ATUIN_336 [Arthrobacter phage Atuin] >gb|WWQ87559.1| hypothetical protein SEA_ATUIN_36 [Arthrobacter phage Atuin] / Identity 50.2618%, Aligned 65.9686%, Coverage 99.0244% /note=XKC21490 hypothetical protein SEA_TALIA1610_44 [Arthrobacter phage Talia1610] >gb|XKC21732.1| hypothetical protein SEA_TALIA1610_330 [Arthrobacter phage Talia1610] / Identity 48.9247%, Aligned 65.9686%, Coverage 100%