CDS 1 - 573
  /gene="1"
  /product="gp1"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_1"
    /note=Original Glimmer call @bp 13 has strength 15.32; Genemark calls start at 1
    /note=SSC: 1-573 CP: yes SCS: both-gm ST: SS BLAST-Start: [hypothetical protein AVT62_gp01 [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 9.26333E-97 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.471, -4.517411177510194, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp01 [Streptomyces phage TP1604] ],,YP_009200116,84.5745,9.26333E-97 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 716 - 1177
  /gene="2"
  /product="gp2"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_2"
    /note=
    /note=SSC: 716-1177 CP: yes SCS: neither ST: SS BLAST-Start: [hypothetical protein SEA_ASIS_2 [Streptomyces phage Asis]],,NCBI, q1:s1 100.0% 4.15602E-90 GAP: 142 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.649482460397077, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ASIS_2 [Streptomyces phage Asis]],,USH45377,94.8052,4.15602E-90 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis
    /note=Between the starting sites of 665 and 716, the coding potential did not cover 665; in the end, we chose 716. 
    /note=HHPred suggest small subunit of terminase

CDS 1174 - 2544
  /gene="3"
  /product="gp3"
  /function="terminase"
  /locus tag="RainyPolka_3"
    /note=Original Glimmer call @bp 1174 has strength 17.6; Genemark calls start at 1174
    /note=SSC: 1174-2544 CP: no SCS: both ST: SS BLAST-Start: [terminase large subunit [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.309, -7.113446230753563, no F: terminase SIF-BLAST: ,,[terminase large subunit [Streptomyces phage Geonosis]],,XBM94968,96.7177,0.0 SIF-HHPRED: Large subunit terminase; large terminase, VIRAL PROTEIN; 2.2A {Deep-sea thermophilic phage D6E},,,5OE8_A,93.6404,100.0 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 2590 - 2991
  /gene="4"
  /product="gp4"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_4"
    /note=Original Glimmer call @bp 2590 has strength 18.51; Genemark calls start at 2590
    /note=SSC: 2590-2991 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_4 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 99.2481% 3.94682E-77 GAP: 45 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.614, -3.3060637489568596, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_4 [Streptomyces phage Abt2graduatex2]],,ATN93707,91.7293,3.94682E-77 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 3048 - 3314
  /gene="5"
  /product="gp5"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_5"
    /note=Original Glimmer call @bp 3048 has strength 10.75; Genemark calls start at 3078
    /note=SSC: 3048-3314 CP: no SCS: both-gl ST: SS BLAST-Start: [hypothetical protein Geonosis_00005 [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 1.60128E-43 GAP: 56 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.526, -5.955490053384832, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein Geonosis_00005 [Streptomyces phage Geonosis]],,XBM94970,89.7727,1.60128E-43 SIF-HHPRED:  SIF-Syn: 

CDS complement (3366 - 3719)
  /gene="6"
  /product="gp6"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_6"
    /note=Original Glimmer call @bp 3719 has strength 14.47; Genemark calls start at 3719
    /note=SSC: 3719-3366 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_6 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.10675E-67 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.867, -4.963787326180191, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_6 [Streptomyces phage Abt2graduatex2]],,ATN93746,92.3077,1.10675E-67 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (3721 - 4083)
  /gene="7"
  /product="gp7"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_7"
    /note=Original Glimmer call @bp 4083 has strength 12.93; Genemark calls start at 4083
    /note=SSC: 4083-3721 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_7 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 83.3333% 4.50709E-60 GAP: 140 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.775, -5.22055569780072, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_7 [Streptomyces phage Abt2graduatex2]],,ATN93747,79.8319,4.50709E-60 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 4224 - 7268
  /gene="8"
  /product="gp8"
  /function="tape measure protein"
  /locus tag="RainyPolka_8"
    /note=Original Glimmer call @bp 4224 has strength 20.73; Genemark calls start at 4224
    /note=SSC: 4224-7268 CP: no SCS: both ST: SS BLAST-Start: [tape measure protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 140 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.649482460397077, yes F: tape measure protein SIF-BLAST: ,,[tape measure protein [Streptomyces phage Abt2graduatex2]],,ATN93748,96.7488,0.0 SIF-HHPRED: Tape Measure Protein, gp57; phage tail, tail tip, tape measure protein, VIRAL PROTEIN; 3.7A {Staphylococcus virus 80alpha},,,6V8I_BF,9.86193,99.9 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 7682 - 8032
  /gene="9"
  /product="gp9"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_9"
    /note=Original Glimmer call @bp 7682 has strength 14.14; Genemark calls start at 7682
    /note=SSC: 7682-8032 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT62_gp09 [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 2.47433E-76 GAP: 413 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.50848394673489, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp09 [Streptomyces phage TP1604] ],,YP_009200124,96.5517,2.47433E-76 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 8039 - 9838
  /gene="10"
  /product="gp10"
  /function="portal protein"
  /locus tag="RainyPolka_10"
    /note=Original Glimmer call @bp 8039 has strength 18.96; Genemark calls start at 8039
    /note=SSC: 8039-9838 CP: no SCS: both ST: SS BLAST-Start: [portal protein [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 0.0 GAP: 6 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -4.609715333525589, no F: portal protein SIF-BLAST: ,,[portal protein [Streptomyces phage Geonosis]],,XBM94975,94.7282,0.0 SIF-HHPRED: Portal protein; Prohead I, icosahedral symmetry, HK97, phage, capsid, VIRUS; 3.6A {Escherichia phage HK97},,,8FQL_D,62.7713,99.9 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 9835 - 13392
  /gene="11"
  /product="gp11"
  /function="capsid maturation protease"
  /locus tag="RainyPolka_11"
    /note=Original Glimmer call @bp 9835 has strength 18.83; Genemark calls start at 9835
    /note=SSC: 9835-13392 CP: no SCS: both ST: SS BLAST-Start: [capsid maturation protease [Streptomyces phage Asis]],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.895, -4.905314844093283, no F: capsid maturation protease SIF-BLAST: ,,[capsid maturation protease [Streptomyces phage Asis]],,USH45386,92.953,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 13397 - 13582
  /gene="12"
  /product="gp12"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_12"
    /note=Original Glimmer call @bp 13397 has strength 13.5; Genemark calls start at 13397
    /note=SSC: 13397-13582 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein Geonosis_00012 [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 1.69783E-29 GAP: 4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.859592806742189, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein Geonosis_00012 [Streptomyces phage Geonosis]],,XBM94977,95.082,1.69783E-29 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 13679 - 15376
  /gene="13"
  /product="gp13"
  /function="major capsid protein"
  /locus tag="RainyPolka_13"
    /note=Original Glimmer call @bp 13679 has strength 19.22; Genemark calls start at 13679
    /note=SSC: 13679-15376 CP: no SCS: both ST: SS BLAST-Start: [major capsid hexamer protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 99.469% 0.0 GAP: 96 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.23, -4.769282179590024, no F: major capsid protein SIF-BLAST: ,,[major capsid hexamer protein [Streptomyces phage Abt2graduatex2]],,ATN93752,95.4145,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (15440 - 15745)
  /gene="14"
  /product="gp14"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_14"
    /note=Original Glimmer call @bp 15745 has strength 13.24; Genemark calls start at 15745
    /note=SSC: 15745-15440 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_MISCHIEF19_39 [Streptomyces phage Mischief19]],,NCBI, q3:s4 96.0396% 2.82447E-27 GAP: 128 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.927, -3.5527928455068705, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_MISCHIEF19_39 [Streptomyces phage Mischief19]],,QBZ73524,68.5714,2.82447E-27 SIF-HHPRED:  SIF-Syn: not shown on Asis
    /note=This predicted protein has similarity to the protein encoded by Mischief19 gene 39 and phiSAJS1 gene 38

CDS 15874 - 16773
  /gene="15"
  /product="gp15"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_15"
    /note=Original Glimmer call @bp 15874 has strength 16.29; Genemark calls start at 15874
    /note=SSC: 15874-16773 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_MAIH_14 [Streptomyces phage Maih] ],,NCBI, q1:s1 98.9967% 0.0 GAP: 128 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.852, -3.15492870275902, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_MAIH_14 [Streptomyces phage Maih] ],,ALY07264,94.9664,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 16770 - 17204
  /gene="16"
  /product="gp16"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_16"
    /note=Original Glimmer call @bp 16770 has strength 14.06; Genemark calls start at 16770
    /note=SSC: 16770-17204 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_16 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.37966E-49 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.895, -4.905314844093283, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_16 [Streptomyces phage Abt2graduatex2]],,ATN93709,75.3521,1.37966E-49 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 17299 - 17994
  /gene="17"
  /product="gp17"
  /function="major tail protein"
  /locus tag="RainyPolka_17"
    /note=Original Glimmer call @bp 17299 has strength 15.32; Genemark calls start at 17299
    /note=SSC: 17299-17994 CP: no SCS: both ST: SS BLAST-Start: [major tail protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 99.5671% 1.4199E-161 GAP: 94 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.614, -3.368377069717189, yes F: major tail protein SIF-BLAST: ,,[major tail protein [Streptomyces phage Abt2graduatex2]],,ATN93760,97.8355,1.4199E-161 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 18081 - 18941
  /gene="18"
  /product="gp18"
  /function="head-to-tail adaptor"
  /locus tag="RainyPolka_18"
    /note=Original Glimmer call @bp 18081 has strength 17.63; Genemark calls start at 18081
    /note=SSC: 18081-18941 CP: no SCS: both ST: SS BLAST-Start: [head-to-tail adaptor [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 86 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.649482460397077, yes F: head-to-tail adaptor SIF-BLAST: ,,[head-to-tail adaptor [Streptomyces phage Abt2graduatex2]],,ATN93761,98.6014,0.0 SIF-HHPRED: Head completion protein; Neck, Portal, T5, VIRUS, VIRAL PROTEIN; 3.2A {Escherichia phage DT57C},,,8HQO_R,82.1678,99.2 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 18941 - 19603
  /gene="19"
  /product="gp19"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_19"
    /note=Original Glimmer call @bp 18941 has strength 7.63; Genemark calls start at 18941
    /note=SSC: 18941-19603 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT63_gp19 [Streptomyces phage YDN12] ],,NCBI, q1:s1 95.0% 5.02797E-137 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.095, -2.9440753374441266, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT63_gp19 [Streptomyces phage YDN12] ],,YP_009215322,95.283,5.02797E-137 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 19600 - 19980
  /gene="20"
  /product="gp20"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_20"
    /note=Original Glimmer call @bp 19600 has strength 8.93; Genemark calls start at 19600
    /note=SSC: 19600-19980 CP: no SCS: both ST: SS BLAST-Start: [head-to-tail connector [Streptomyces phage TP1604] ],,NCBI, q1:s1 99.2064% 5.94818E-79 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.924, -4.843798539558957, no F: Hypothetical Protein SIF-BLAST: ,,[head-to-tail connector [Streptomyces phage TP1604] ],,YP_009200134,96.8254,5.94818E-79 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis
    /note=The homologs of this gene in some BG phages were assigned the function of a tail assembly chaperone, but the evidence was not strong.

CDS 20343 - 20729
  /gene="21"
  /product="gp21"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_21"
    /note=Original Glimmer call @bp 20343 has strength 6.67; Genemark calls start at 20355
    /note=SSC: 20343-20729 CP: no SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_21 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 9.85024E-42 GAP: 362 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.859592806742189, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_21 [Streptomyces phage Abt2graduatex2]],,ATN93763,70.9677,9.85024E-42 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 20723 - 22063
  /gene="22"
  /product="gp22"
  /function="minor tail protein"
  /locus tag="RainyPolka_22"
    /note=Original Glimmer call @bp 20723 has strength 16.71; Genemark calls start at 20723
    /note=SSC: 20723-22063 CP: no SCS: both ST: SS BLAST-Start: [minor tail protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: -7 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.693, -3.490561115344053, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Streptomyces phage Abt2graduatex2]],,ATN93710,94.6188,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis
    /note=The function is called by synteny.

CDS 22064 - 23092
  /gene="23"
  /product="gp23"
  /function="minor tail protein"
  /locus tag="RainyPolka_23"
    /note=Original Glimmer call @bp 22064 has strength 19.76; Genemark calls start at 22064
    /note=SSC: 22064-23092 CP: no SCS: both ST: SS BLAST-Start: [minor tail protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.614, -3.3060637489568596, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Streptomyces phage Abt2graduatex2]],,ATN93764,98.538,0.0 SIF-HHPRED: Sipho_Gp37 ; Siphovirus ReqiPepy6 Gp37-like protein,,,PF14594.9,91.8129,99.6 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 23092 - 23613
  /gene="24"
  /product="gp24"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_24"
    /note=Original Glimmer call @bp 23092 has strength 9.85; Genemark calls start at 23092
    /note=SSC: 23092-23613 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_24 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.29438E-86 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.101, -4.532304881730868, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_24 [Streptomyces phage Abt2graduatex2]],,ATN93765,93.1034,1.29438E-86 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 23647 - 24375
  /gene="25"
  /product="gp25"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_25"
    /note=Original Glimmer call @bp 23647 has strength 9.91; Genemark calls start at 23662
    /note=SSC: 23647-24375 CP: no SCS: both-gl ST: SS BLAST-Start: [tail fiber assembly [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 3.98659E-100 GAP: 33 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.546, -3.978761577779152, yes F: Hypothetical Protein SIF-BLAST: ,,[tail fiber assembly [Streptomyces phage TP1604] ],,YP_009200139,91.7695,3.98659E-100 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 24385 - 25302
  /gene="26"
  /product="gp26"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_26"
    /note=Original Glimmer call @bp 24385 has strength 13.32; Genemark calls start at 24385
    /note=SSC: 24385-25302 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_26 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 3.00105E-114 GAP: 9 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.857, -2.8742224756987462, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_26 [Streptomyces phage Abt2graduatex2]],,ATN93755,93.4853,3.00105E-114 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (25352 - 25909)
  /gene="27"
  /product="gp27"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_27"
    /note=Original Glimmer call @bp 25909 has strength 13.64; Genemark calls start at 25909
    /note=SSC: 25909-25352 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_27 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.8712E-128 GAP: 94 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.5707972674952195, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_27 [Streptomyces phage Abt2graduatex2]],,ATN93770,98.9189,1.8712E-128 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 26004 - 27281
  /gene="28"
  /product="gp28"
  /function="endolysin"
  /locus tag="RainyPolka_28"
    /note=Original Glimmer call @bp 26004 has strength 17.06; Genemark calls start at 26004
    /note=SSC: 26004-27281 CP: no SCS: both ST: SS BLAST-Start: [endolysin [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 94 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.927, -2.6453814847322845, yes F: endolysin SIF-BLAST: ,,[endolysin [Streptomyces phage Abt2graduatex2]],,ATN93711,97.4118,0.0 SIF-HHPRED: N-acetylmuramoyl-L-alanine amidase; amidase, zinc binding, cell wall degradation, endolysine, hydrolase; HET: GOL, PO4; 1.21A {Clostridium intestinale} SCOP: d.118.1.0,,,6SSC_A,46.5882,98.3 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 27290 - 27523
  /gene="29"
  /product="gp29"
  /function="holin"
  /locus tag="RainyPolka_29"
    /note=Original Glimmer call @bp 27290 has strength 22.44; Genemark calls start at 27284
    /note=SSC: 27290-27523 CP: no SCS: both-gl ST: SS BLAST-Start: [holin [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.17778E-43 GAP: 8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.968, -3.0866669750886713, yes F: holin SIF-BLAST: ,,[holin [Streptomyces phage Abt2graduatex2]],,ATN93766,100.0,5.17778E-43 SIF-HHPRED: Phage_r1t_holin ; Putative lactococcus lactis phage r1t holin,,,PF16945.8,89.6104,99.7 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 27582 - 27845
  /gene="30"
  /product="gp30"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_30"
    /note=Original Glimmer call @bp 27582 has strength 12.98; Genemark calls start at 27630
    /note=SSC: 27582-27845 CP: no SCS: both-gl ST: SS BLAST-Start: [hypothetical protein AVT62_gp29 [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 2.67602E-46 GAP: 58 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.704, -3.196631460098011, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp29 [Streptomyces phage TP1604] ],,YP_009200144,94.2529,2.67602E-46 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (27905 - 28309)
  /gene="31"
  /product="gp31"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_31"
    /note=Original Glimmer call @bp 28309 has strength 16.54; Genemark calls start at 28309
    /note=SSC: 28309-27905 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_31 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.58076E-84 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.084, -3.6201507341789747, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_31 [Streptomyces phage Abt2graduatex2]],,ATN93756,96.2687,1.58076E-84 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (28309 - 28572)
  /gene="32"
  /product="gp32"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_32"
    /note=Original Glimmer call @bp 28572 has strength 8.95; Genemark calls start at 28572
    /note=SSC: 28572-28309 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_32 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.93817E-51 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.548, -4.353950185769375, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_32 [Streptomyces phage Abt2graduatex2]],,ATN93772,94.2529,5.93817E-51 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (28569 - 28781)
  /gene="33"
  /product="gp33"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_33"
    /note=Original Glimmer call @bp 28781 has strength 18.62; Genemark calls start at 28781
    /note=SSC: 28781-28569 CP: no SCS: both ST: SS BLAST-Start: [MULTISPECIES: hypothetical protein [unclassified Streptomyces] ],,NCBI, q1:s1 100.0% 2.18713E-26 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.023, -4.696275508110696, no F: Hypothetical Protein SIF-BLAST: ,,[MULTISPECIES: hypothetical protein [unclassified Streptomyces] ],,WP_383310542,78.5714,2.18713E-26 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (28778 - 29380)
  /gene="34"
  /product="gp34"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_34"
    /note=Original Glimmer call @bp 29380 has strength 17.31; Genemark calls start at 29380
    /note=SSC: 29380-28778 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_BABYGOTBAC_33 [Streptomyces phage BabyGotBac]],,NCBI, q3:s2 99.0% 3.24661E-112 GAP: 75 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.927, -2.6453814847322845, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_BABYGOTBAC_33 [Streptomyces phage BabyGotBac]],,APZ82201,90.625,3.24661E-112 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (29456 - 29566)
  /gene="35"
  /product="gp35"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_35"
    /note=Genemark calls start at 29566
    /note=SSC: 29566-29456 CP: no SCS: genemark ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_35 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.08074E-14 GAP: 73 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.50848394673489, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_35 [Streptomyces phage Abt2graduatex2]],,ATN93773,94.4444,5.08074E-14 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and BabyGotBac

CDS complement (29640 - 29810)
  /gene="36"
  /product="gp36"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_36"
    /note=Original Glimmer call @bp 29795 has strength 16.07; Genemark calls start at 29810
    /note=SSC: 29810-29640 CP: no SCS: both-gm ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_36 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 98.2143% 8.61546E-26 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.852, -3.711231203526307, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_36 [Streptomyces phage Abt2graduatex2]],,ATN93774,91.0714,8.61546E-26 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (29807 - 30406)
  /gene="37"
  /product="gp37"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_37"
    /note=Original Glimmer call @bp 30406 has strength 8.64; Genemark calls start at 30406
    /note=SSC: 30406-29807 CP: no SCS: both ST: SS BLAST-Start: [HNH endonuclease [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 4.60052E-138 GAP: 66 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.834, -4.954064444624791, no F: Hypothetical Protein SIF-BLAST: ,,[HNH endonuclease [Streptomyces phage Abt2graduatex2]],,ATN93757,97.4874,4.60052E-138 SIF-HHPRED: INTRON 3 (I-PPO) ENCODED ENDONUCLEASE; COMPLEX (HOMING ENDONUCLEASE-DNA), INTRON, ZINC, DNA BINDING, PROTEIN FOLDING, HYDROLASE-DNA COMPLEX; 1.8A {Physarum polycephalum} SCOP: d.4.1.3,,,1A73_A,48.2412,99.5 SIF-Syn: Similar to Abt2graduatex2 and Asis
    /note=The function call "HNH endonuclease was by BLAST; however, it seems this protein sequence does not have a stretch of H-N-H over a 30 aa span, it is better called a hypothetical protein. Also, the location of this gene is not at the beginning or the end of the genome.

CDS complement (30473 - 30700)
  /gene="38"
  /product="gp38"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_38"
    /note=Original Glimmer call @bp 30700 has strength 15.8; Genemark calls start at 30700
    /note=SSC: 30700-30473 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_38 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 2.74428E-41 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.993, -4.681417770958569, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_38 [Streptomyces phage Abt2graduatex2]],,ATN93775,94.5946,2.74428E-41 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (30700 - 31080)
  /gene="39"
  /product="gp39"
  /function="WhiB family transcription factor"
  /locus tag="RainyPolka_39"
    /note=Original Glimmer call @bp 31080 has strength 13.65; Genemark calls start at 31080
    /note=SSC: 31080-30700 CP: no SCS: both ST: SS BLAST-Start: [WhiB family transcription factor [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.78069E-73 GAP: 61 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.006, -2.5410833118725082, yes F: WhiB family transcription factor SIF-BLAST: ,,[WhiB family transcription factor [Streptomyces phage Abt2graduatex2]],,ATN93713,92.0635,1.78069E-73 SIF-HHPRED: Redox- and pH-responsive transcriptional regulator WhiB3; redox sensor, transcriptional factor, protein-DNA complex, TRANSCRIPTION, TRANSCRIPTION-DNA-Transferase complex; 2.44A {Mycobacterium tuberculosis},,,8CYF_A,63.4921,99.6 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (31142 - 31480)
  /gene="40"
  /product="gp40"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_40"
    /note=Original Glimmer call @bp 31480 has strength 14.21; Genemark calls start at 31480
    /note=SSC: 31480-31142 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_40 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 8.94044E-63 GAP: 153 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.614, -3.3060637489568596, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_40 [Streptomyces phage Abt2graduatex2]],,ATN93768,95.5357,8.94044E-63 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (31634 - 32578)
  /gene="41"
  /product="gp41"
  /function="DNA methyltransferase"
  /locus tag="RainyPolka_41"
    /note=Original Glimmer call @bp 32578 has strength 17.03; Genemark calls start at 32578
    /note=SSC: 32578-31634 CP: no SCS: both ST: SS BLAST-Start: [DNA methylase [Streptomyces phage YDN12] ],,NCBI, q1:s1 100.0% 0.0 GAP: 107 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.006, -2.5588120788329394, yes F: DNA methyltransferase SIF-BLAST: ,,[DNA methylase [Streptomyces phage YDN12] ],,YP_009215343,88.535,0.0 SIF-HHPRED: DNA (cytosine-5)-methyltransferase 1; DNMT1, DNA methytransferase1, DNA methylation, TRANSFERASE; HET: ZN, SAH; 2.622A {Homo sapiens},,,8C59_A,99.6815,100.0 SIF-Syn: Similar to Abt2graduatex2

CDS complement (32686 - 33609)
  /gene="42"
  /product="gp42"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_42"
    /note=Original Glimmer call @bp 33609 has strength 19.93; Genemark calls start at 33609
    /note=SSC: 33609-32686 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_42 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 167 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.5707972674952195, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_42 [Streptomyces phage Abt2graduatex2]],,ATN93777,93.5065,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (33777 - 34205)
  /gene="43"
  /product="gp43"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_43"
    /note=Original Glimmer call @bp 34205 has strength 20.22; Genemark calls start at 34205
    /note=SSC: 34205-33777 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT62_gp42 [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 5.8346E-85 GAP: 166 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.003, -4.677187045938851, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp42 [Streptomyces phage TP1604] ],,YP_009200157,96.4286,5.8346E-85 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (34372 - 34971)
  /gene="44"
  /product="gp44"
  /function="Hypothetical protein"
  /locus tag="RainyPolka_44"
    /note=Original Glimmer call @bp 34971 has strength 8.96; Genemark calls start at 34971
    /note=SSC: 34971-34372 CP: no SCS: both ST: SS BLAST-Start: [cysteine protease [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 3.94094E-111 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.718, -5.340269015678895, no F: Hypothetical protein SIF-BLAST: ,,[cysteine protease [Streptomyces phage Abt2graduatex2]],,ATN93714,94.9749,3.94094E-111 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (34974 - 36140)
  /gene="45"
  /product="gp45"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_45"
    /note=Original Glimmer call @bp 36140 has strength 23.73; Genemark calls start at 36140
    /note=SSC: 36140-34974 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_45 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 72 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.927, -2.6453814847322845, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_45 [Streptomyces phage Abt2graduatex2]],,ATN93715,95.1031,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS 36213 - 36413
  /gene="46"
  /product="gp46"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="RainyPolka_46"
    /note=Original Glimmer call @bp 36213 has strength 14.17; Genemark calls start at 36213
    /note=SSC: 36213-36413 CP: no SCS: both ST: SS BLAST-Start: [HTH DNA binding protein [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 6.40058E-33 GAP: 72 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.815, -5.822326712960318, no F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[HTH DNA binding protein [Streptomyces phage TP1604] ],,YP_009200160,90.9091,6.40058E-33 SIF-HHPRED: Recombination Directionality Factor RdfS; Excisionase, Recombination Directionality Factor, winged helix-turn-helix, superhelix, DNA BINDING PROTEIN; HET: GOL; 2.45A {Mesorhizobium japonicum R7A},,,8DGL_A,83.3333,98.0 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (36410 - 36940)
  /gene="47"
  /product="gp47"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_47"
    /note=Original Glimmer call @bp 36940 has strength 19.52; Genemark calls start at 36940
    /note=SSC: 36940-36410 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT62_gp46 [Streptomyces phage TP1604] ],,NCBI, q1:s1 93.75% 1.1231E-72 GAP: 14 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.597, -3.482870966776971, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp46 [Streptomyces phage TP1604] ],,YP_009200161,79.7688,1.1231E-72 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (36955 - 37287)
  /gene="48"
  /product="gp48"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_48"
    /note=Original Glimmer call @bp 37287 has strength 18.79; Genemark calls start at 37287
    /note=SSC: 37287-36955 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_48 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.63708E-69 GAP: 83 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.546, -3.513874779476501, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_48 [Streptomyces phage Abt2graduatex2]],,ATN93718,96.3636,1.63708E-69 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (37371 - 39380)
  /gene="49"
  /product="gp49"
  /function="DNA polymerase I"
  /locus tag="RainyPolka_49"
    /note=Original Glimmer call @bp 39380 has strength 20.39; Genemark calls start at 39380
    /note=SSC: 39380-37371 CP: no SCS: both ST: SS BLAST-Start: [DNA polymerase [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 0.0 GAP: 105 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.927, -2.707694805492614, yes F: DNA polymerase I SIF-BLAST: ,,[DNA polymerase [Streptomyces phage Geonosis]],,XBM95013,94.7683,0.0 SIF-HHPRED: DNA polymerase theta; DNA polymerase, protein-DNA complex, DNA repair, TRANSFERASE; HET: DDG, DG3; 2.26A {Homo sapiens},,,7ZUS_BBB,92.6756,100.0 SIF-Syn: Similar to Abt2graduatex2 and Asis

CDS complement (39486 - 41699)
  /gene="50"
  /product="gp50"
  /function="DNA primase"
  /locus tag="RainyPolka_50"
    /note=Original Glimmer call @bp 41699 has strength 17.95; Genemark calls start at 41699
    /note=SSC: 41699-39486 CP: no SCS: both ST: SS BLAST-Start: [DNA primase [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 629 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.317, -4.28556153901447, no F: DNA primase SIF-BLAST: ,,[DNA primase [Streptomyces phage Abt2graduatex2]],,ATN93721,96.2759,0.0 SIF-HHPRED: DNA primase; Helicase, DNA binding, AMPPNP, REPLICATION; HET: ANP; 3.1A {Staphylococcus aureus},,,7OM0_C,51.0176,99.9 SIF-Syn: Similar to Asis

CDS 42329 - 43408
  /gene="51"
  /product="gp51"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_51"
    /note=Original Glimmer call @bp 42329 has strength 20.23; Genemark calls start at 42329
    /note=SSC: 42329-43408 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_52 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 629 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.418, -3.8010267367911315, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_52 [Streptomyces phage Abt2graduatex2]],,ATN93722,89.3175,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 43405 - 44088
  /gene="52"
  /product="gp52"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_52"
    /note=Original Glimmer call @bp 43405 has strength 9.18; Genemark calls start at 43405
    /note=SSC: 43405-44088 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_53 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 4.28547E-129 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.895, -4.905314844093283, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_53 [Streptomyces phage Abt2graduatex2]],,ATN93723,88.1057,4.28547E-129 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 44180 - 46018
  /gene="53"
  /product="gp53"
  /function="DNA helicase"
  /locus tag="RainyPolka_53"
    /note=Original Glimmer call @bp 44180 has strength 19.42; Genemark calls start at 44180
    /note=SSC: 44180-46018 CP: no SCS: both ST: SS BLAST-Start: [helicase [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 0.0 GAP: 91 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.084, -2.314799364732351, yes F: DNA helicase SIF-BLAST: ,,[helicase [Streptomyces phage TP1604] ],,YP_009200169,98.2026,0.0 SIF-HHPRED: ATP-dependent DNA helicase uvsW; ATP-dependant helicase, T4-bacteriophage, Recombination, HYDROLASE; 2.7A {Enterobacteria phage T4},,,2OCA_A,57.5163,99.9 SIF-Syn: Similar to Abt2graduatex2

CDS 46116 - 46508
  /gene="54"
  /product="gp54"
  /function="RNA binding protein"
  /locus tag="RainyPolka_54"
    /note=Original Glimmer call @bp 46116 has strength 13.85; Genemark calls start at 46116
    /note=SSC: 46116-46508 CP: no SCS: both ST: SS BLAST-Start: [RNA binding protein [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 7.15213E-61 GAP: 97 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.006, -2.4787699911121788, yes F: RNA binding protein SIF-BLAST: ,,[RNA binding protein [Streptomyces phage Abt2graduatex2]],,ATN93725,84.375,7.15213E-61 SIF-HHPRED: RNase adapter protein RapZ; RNA binding Amino-sugar metabolism Kinase like domain PFK like domain, CHAPERONE; 1.17A {Escherichia coli},,,5O5S_A,91.5385,100.0 SIF-Syn: Similar to Abt2graduatex2

CDS 46505 - 46927
  /gene="55"
  /product="gp55"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_55"
    /note=Original Glimmer call @bp 46505 has strength 13.46; Genemark calls start at 46505
    /note=SSC: 46505-46927 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_56 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.4431E-75 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.649482460397077, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_56 [Streptomyces phage Abt2graduatex2]],,ATN93726,95.0,5.4431E-75 SIF-HHPRED: DUF3307 ; Protein of unknown function (DUF3307),,,PF11750.11,90.0,99.6 SIF-Syn: Similar to Abt2graduatex2

CDS 47032 - 47571
  /gene="56"
  /product="gp56"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_56"
    /note=Original Glimmer call @bp 47032 has strength 17.66; Genemark calls start at 47032
    /note=SSC: 47032-47571 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_57 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 3.73638E-120 GAP: 104 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.702, -3.120979338716238, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_57 [Streptomyces phage Abt2graduatex2]],,ATN93727,96.6851,3.73638E-120 SIF-HHPRED: Putative uncharacterized protein; DNA BINDING PROTEIN; NMR {Hyperthermus butylicus},,,2LVS_A,70.3911,96.4 SIF-Syn: Similar to Abt2graduatex2
    /note=DNA BINDING PROTEIN?

CDS 47593 - 48036
  /gene="57"
  /product="gp57"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_57"
    /note=Original Glimmer call @bp 47593 has strength 16.13; Genemark calls start at 47596
    /note=SSC: 47593-48036 CP: no SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_58 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.11898E-98 GAP: 21 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.539, -4.116640962647576, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_58 [Streptomyces phage Abt2graduatex2]],,ATN93728,97.9592,5.11898E-98 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 48033 - 48623
  /gene="58"
  /product="gp58"
  /function="RuvC-like resolvase"
  /locus tag="RainyPolka_58"
    /note=Original Glimmer call @bp 48033 has strength 14.63; Genemark calls start at 48033
    /note=SSC: 48033-48623 CP: no SCS: both ST: SS BLAST-Start: [RuvC-like Holliday junction resolvase [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 1.14845E-135 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.895, -5.3524728754355015, no F: RuvC-like resolvase SIF-BLAST: ,,[RuvC-like Holliday junction resolvase [Streptomyces phage TP1604] ],,YP_009200175,99.4898,1.14845E-135 SIF-HHPRED: c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]},,,d1hjra_,79.0816,99.8 SIF-Syn: Similar to Abt2graduatex2

CDS 48625 - 48873
  /gene="59"
  /product="gp59"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_59"
    /note=Original Glimmer call @bp 48625 has strength 16.77; Genemark calls start at 48625
    /note=SSC: 48625-48873 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT62_gp61 [Streptomyces phage TP1604] ],,NCBI, q1:s1 100.0% 2.04156E-35 GAP: 1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.519, -3.50848394673489, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT62_gp61 [Streptomyces phage TP1604] ],,YP_009200176,91.4634,2.04156E-35 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 48995 - 50059
  /gene="60"
  /product="gp60"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_60"
    /note=Original Glimmer call @bp 48995 has strength 18.92; Genemark calls start at 48995
    /note=SSC: 48995-50059 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_61 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 121 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.546, -4.279791573443133, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_61 [Streptomyces phage Abt2graduatex2]],,ATN93731,93.7853,0.0 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 50125 - 50481
  /gene="61"
  /product="gp61"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_61"
    /note=Original Glimmer call @bp 50125 has strength 15.81; Genemark calls start at 50125
    /note=SSC: 50125-50481 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein Geonosis_00063 [Streptomyces phage Geonosis]],,NCBI, q1:s1 100.0% 2.41047E-71 GAP: 65 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.597, -3.3418724531147843, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein Geonosis_00063 [Streptomyces phage Geonosis]],,XBM95028,94.9153,2.41047E-71 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2
    /note=Function similarity to pfam10590?

CDS 50481 - 50678
  /gene="62"
  /product="gp62"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_62"
    /note=Original Glimmer call @bp 50481 has strength 8.42; Genemark calls start at 50481
    /note=SSC: 50481-50678 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein AVT63_gp62 [Streptomyces phage YDN12] ],,NCBI, q1:s1 100.0% 1.21125E-31 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.618, -5.491506094349139, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein AVT63_gp62 [Streptomyces phage YDN12] ],,YP_009215365,89.2308,1.21125E-31 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 50764 - 50946
  /gene="63"
  /product="gp63"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_63"
    /note=Original Glimmer call @bp 50764 has strength 18.08; Genemark calls start at 50764
    /note=SSC: 50764-50946 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_64 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 3.07031E-26 GAP: 85 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.546, -4.279791573443133, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_64 [Streptomyces phage Abt2graduatex2]],,ATN93734,95.0,3.07031E-26 SIF-HHPRED: DUF5325 ; Family of unknown function (DUF5325),,,PF17259.5,98.3333,85.0 SIF-Syn: Similar to Abt2graduatex2

CDS 51041 - 51796
  /gene="64"
  /product="gp64"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_64"
    /note=Original Glimmer call @bp 51041 has strength 19.24; Genemark calls start at 51041
    /note=SSC: 51041-51796 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_65 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 7.82567E-172 GAP: 94 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.444, -3.7469643924750877, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_65 [Streptomyces phage Abt2graduatex2]],,ATN93735,95.9839,7.82567E-172 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 51882 - 52034
  /gene="65"
  /product="gp65"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_65"
    /note=Original Glimmer call @bp 51882 has strength 22.6; Genemark calls start at 51882
    /note=SSC: 51882-52034 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_66 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.4549E-21 GAP: 85 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.927, -2.996490344739583, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_66 [Streptomyces phage Abt2graduatex2]],,ATN93736,94.0,1.4549E-21 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 52034 - 52246
  /gene="66"
  /product="gp66"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_66"
    /note=Original Glimmer call @bp 52034 has strength 14.87; Genemark calls start at 52034
    /note=SSC: 52034-52246 CP: no SCS: both ST: SS BLAST-Start: [HicA-like toxin [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 5.3502E-42 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.53, -5.737781940530047, no F: Hypothetical Protein SIF-BLAST: ,,[HicA-like toxin [Streptomyces phage Abt2graduatex2]],,ATN93737,98.5714,5.3502E-42 SIF-HHPRED: HicA; N-terminal domain of the antitoxin HicB which acts as an inhibitor to HicA, ANTITOXIN; HET: EDO, SO4, PGE; 2.49A {Burkholderia pseudomallei K96243},,,6G26_G,94.2857,99.4 SIF-Syn: Similar to Abt2graduatex2
    /note=toxin in toxin/antitoxin system, HicA-like?

CDS 52480 - 52815
  /gene="67"
  /product="gp67"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_67"
    /note=Original Glimmer call @bp 52480 has strength 12.26; Genemark calls start at 52480
    /note=SSC: 52480-52815 CP: no SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_68 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 1.17824E-63 GAP: 233 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.519, -3.649482460397077, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_68 [Streptomyces phage Abt2graduatex2]],,ATN93738,97.2973,1.17824E-63 SIF-HHPRED:  SIF-Syn: Similar to Abt2graduatex2

CDS 52850 - 53845
  /gene="68"
  /product="gp68"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_68"
    /note=Original Glimmer call @bp 52850 has strength 13.87; Genemark calls start at 52850
    /note=SSC: 52850-53845 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_ABT2GRADUATEX2_69 [Streptomyces phage Abt2graduatex2]],,NCBI, q1:s1 100.0% 0.0 GAP: 34 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.597, -3.404185773875114, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_ABT2GRADUATEX2_69 [Streptomyces phage Abt2graduatex2]],,ATN93739,94.8641,0.0 SIF-HHPRED: Recombination Directionality Factor RdfS; Excisionase, Recombination Directionality Factor, winged helix-turn-helix, superhelix, DNA BINDING PROTEIN; HET: GOL; 2.45A {Mesorhizobium japonicum R7A},,,8DGL_A,15.4079,97.7 SIF-Syn: Similar to Abt2graduatex2
    /note=There may be a functional role for this gene product; see the conserved domain hits and HHPred hits.

CDS 53958 - 54467
  /gene="69"
  /product="gp69"
  /function="Hypothetical Protein"
  /locus tag="RainyPolka_69"
    /note=Original Glimmer call @bp 53958 has strength 17.51; Genemark calls start at 53958
    /note=SSC: 53958-54467 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein [Streptomyces sp. SAJ15] ],,NCBI, q6:s9 94.0828% 6.24944E-20 GAP: 112 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.927, -3.5527928455068705, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein [Streptomyces sp. SAJ15] ],,WP_144385685,43.128,6.24944E-20 SIF-HHPRED:  SIF-Syn: 
    /note=an orpham, pham125310, has some similarity to a hypothetical protein of Streptomyces

CDS 54789 - 56837
  /gene="70"
  /product="gp70"
  /function="FtsK-like DNA translocase"
  /locus tag="RainyPolka_70"
    /note=Original Glimmer call @bp 54789 has strength 18.35; Genemark calls start at 54789
    /note=SSC: 54789-56837 CP: no SCS: both ST: SS BLAST-Start: [FtsK-like DNA translocase [Streptomyces phage BayC] ],,NCBI, q1:s1 100.0% 0.0 GAP: 321 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.546, -3.4515614587161716, no F: FtsK-like DNA translocase SIF-BLAST: ,,[FtsK-like DNA translocase [Streptomyces phage BayC] ],,AWN08431,92.6686,0.0 SIF-HHPRED: DNA TRANSLOCASE FTSK; NUCLEOTIDE-BINDING, CHROMOSOME PARTITION, ATP-BINDING, DNA- BINDING, CELL DIVISION, DNA TRANSLOCATION, KOPS, MEMBRANE, DIVISOME, CELL CYCLE, MEMBRANE; HET: AGS; 2.25A {PSEUDOMONAS AERUGINOSA},,,2IUT_B,66.5689,99.9 SIF-Syn: Similar to Abt2graduatex2