CDS 84 - 548
  /gene="1"
  /product="gp1"
  /function="terminase, small subunit"
  /locus tag="Shaffner_1"
    /note=Original Glimmer call @bp 84 has strength 15.32; Genemark calls start at 84
    /note=SSC: 84-548 CP: yes SCS: both ST: SS BLAST-Start: [terminase small subunit [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 2.16816E-104 GAP: 0 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.218, -1.953940808934884, yes F: terminase, small subunit SIF-BLAST: ,,[terminase small subunit [Arthrobacter phage JuneStar]],,XEN13072,99.3506,2.16816E-104 SIF-HHPRED:  SIF-Syn: 

CDS 545 - 2242
  /gene="2"
  /product="gp2"
  /function="terminase, large subunit"
  /locus tag="Shaffner_2"
    /note=Original Glimmer call @bp 545 has strength 18.57; Genemark calls start at 545
    /note=SSC: 545-2242 CP: yes SCS: both ST: SS BLAST-Start: [terminase large subunit [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.089, -4.394706008439538, no F: terminase, large subunit SIF-BLAST: ,,[terminase large subunit [Arthrobacter phage Yang] ],,YP_009815620,99.823,0.0 SIF-HHPRED: Terminase large subunit; genome packaging, bacteriophage, ATPase, nuclease, VIRAL PROTEIN; HET: BR; 2.2A {Enterobacteria phage HK97},,,6Z6D_A,93.0973,100.0 SIF-Syn: 

CDS 2261 - 3796
  /gene="3"
  /product="gp3"
  /function="portal protein"
  /locus tag="Shaffner_3"
    /note=Original Glimmer call @bp 2261 has strength 19.06; Genemark calls start at 2261
    /note=SSC: 2261-3796 CP: yes SCS: both ST: SS BLAST-Start: [portal protein [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: 18 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.218, -2.033982896655645, yes F: portal protein SIF-BLAST: ,,[portal protein [Arthrobacter phage Yang] ],,YP_009815621,99.8043,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 3812 - 5824
  /gene="4"
  /product="gp4"
  /function="Capsid maturation protease and VIP2-like ADP-ribosyltransferase toxin"
  /locus tag="Shaffner_4"
    /note=Original Glimmer call @bp 3812 has strength 13.65; Genemark calls start at 3848
    /note=SSC: 3812-5824 CP: yes SCS: both-gl ST: SS BLAST-Start: [head maturation protease [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: 15 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.064, -2.338663114094478, yes F: Capsid maturation protease and VIP2-like ADP-ribosyltransferase toxin SIF-BLAST: ,,[head maturation protease [Arthrobacter phage Yang] ],,YP_009815622,99.1045,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 5872 - 6231
  /gene="5"
  /product="gp5"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_5"
    /note=Original Glimmer call @bp 5872 has strength 13.39; Genemark calls start at 5872
    /note=SSC: 5872-6231 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_CASSIA_5 [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 4.30652E-74 GAP: 47 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.218, -1.953940808934884, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_CASSIA_5 [Arthrobacter phage Cassia]],,WGH21078,97.479,4.30652E-74 SIF-HHPRED:  SIF-Syn: 

CDS 6350 - 6904
  /gene="6"
  /product="gp6"
  /function="scaffolding protein"
  /locus tag="Shaffner_6"
    /note=Original Glimmer call @bp 6350 has strength 16.45; Genemark calls start at 6350
    /note=SSC: 6350-6904 CP: yes SCS: both ST: SS BLAST-Start: [scaffolding protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 5.58317E-114 GAP: 118 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.984, -3.3503726477288405, yes F: scaffolding protein SIF-BLAST: ,,[scaffolding protein [Arthrobacter phage JuneStar]],,XEN13077,95.6522,5.58317E-114 SIF-HHPRED:  SIF-Syn: 

CDS 6931 - 7878
  /gene="7"
  /product="gp7"
  /function="major capsid protein"
  /locus tag="Shaffner_7"
    /note=Original Glimmer call @bp 6931 has strength 20.62; Genemark calls start at 6931
    /note=SSC: 6931-7878 CP: yes SCS: both ST: SS BLAST-Start: [major capsid protein [Arthrobacter phage Cassia] ],,NCBI, q1:s1 100.0% 0.0 GAP: 26 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.121, -2.8084998623841946, yes F: major capsid protein SIF-BLAST: ,,[major capsid protein [Arthrobacter phage Cassia] ],,WGH21080,99.3651,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 7952 - 8347
  /gene="8"
  /product="gp8"
  /function="head-to-tail adaptor"
  /locus tag="Shaffner_8"
    /note=Original Glimmer call @bp 7952 has strength 12.81; Genemark calls start at 7952
    /note=SSC: 7952-8347 CP: yes SCS: both ST: SS BLAST-Start: [head-to-tail adaptor [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 1.8392E-82 GAP: 73 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.218, -2.0162541296952132, yes F: head-to-tail adaptor SIF-BLAST: ,,[head-to-tail adaptor [Arthrobacter phage Cassia]],,WGH21081,97.7099,1.8392E-82 SIF-HHPRED:  SIF-Syn: 

tRNA 8103 - 8192
  /gene="9"
  /product="tRNA-Asp(gtc)"
  /locus tag="SHAFFNER_9"
    /note=tRNA-Asp(gtc)

CDS 8359 - 8472
  /gene="10"
  /product="gp10"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_10"
    /note=Original Glimmer call @bp 8359 has strength 23.67; Genemark calls start at 8359
    /note=SSC: 8359-8472 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp09 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 8.84032E-16 GAP: 11 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.064, -2.2763497933341483, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein HOU52_gp09 [Arthrobacter phage Yang] ],,YP_009815627,100.0,8.84032E-16 SIF-HHPRED:  SIF-Syn: 

CDS 8469 - 8819
  /gene="11"
  /product="gp11"
  /function="head-to-tail stopper"
  /locus tag="Shaffner_11"
    /note=Original Glimmer call @bp 8469 has strength 18.01; Genemark calls start at 8469
    /note=SSC: 8469-8819 CP: yes SCS: both ST: SS BLAST-Start: [head-to-tail stopper [Arthrobacter phage Pumpkins]],,NCBI, q1:s1 100.0% 4.96832E-73 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.529, -3.534757715066017, yes F: head-to-tail stopper SIF-BLAST: ,,[head-to-tail stopper [Arthrobacter phage Pumpkins]],,XEN12893,98.2759,4.96832E-73 SIF-HHPRED:  SIF-Syn: 

CDS 8830 - 9132
  /gene="12"
  /product="gp12"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_12"
    /note=Original Glimmer call @bp 8830 has strength 12.93; Genemark calls start at 8830
    /note=SSC: 8830-9132 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp11 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 2.93174E-61 GAP: 10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.218, -2.4811409279978642, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein HOU52_gp11 [Arthrobacter phage Yang] ],,YP_009815629,100.0,2.93174E-61 SIF-HHPRED:  SIF-Syn: 

CDS 9132 - 9545
  /gene="13"
  /product="gp13"
  /function="tail terminator"
  /locus tag="Shaffner_13"
    /note=Original Glimmer call @bp 9132 has strength 13.96; Genemark calls start at 9132
    /note=SSC: 9132-9545 CP: yes SCS: both ST: SS BLAST-Start: [tail terminator [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 3.39317E-92 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.504, -4.547770211785489, yes F: tail terminator SIF-BLAST: ,,[tail terminator [Arthrobacter phage Yang] ],,YP_009815630,99.2701,3.39317E-92 SIF-HHPRED:  SIF-Syn: 

CDS 9558 - 10109
  /gene="14"
  /product="gp14"
  /function="major tail protein"
  /locus tag="Shaffner_14"
    /note=Original Glimmer call @bp 9558 has strength 18.88; Genemark calls start at 9558
    /note=SSC: 9558-10109 CP: yes SCS: both ST: SS BLAST-Start: [major tail protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 3.40996E-129 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.229, -2.0720764396375664, yes F: major tail protein SIF-BLAST: ,,[major tail protein [Arthrobacter phage JuneStar]],,XEN13084,100.0,3.40996E-129 SIF-HHPRED:  SIF-Syn: 

CDS 10202 - 10471
  /gene="15"
  /product="gp15"
  /function="tail assembly chaperone"
  /locus tag="Shaffner_15"
    /note=Original Glimmer call @bp 10202 has strength 20.94; Genemark calls start at 10202
    /note=SSC: 10202-10471 CP: yes SCS: both ST: SS BLAST-Start: [tail assembly chaperone [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 1.51119E-56 GAP: 92 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.229, -2.0720764396375664, yes F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Arthrobacter phage Yang] ],,YP_009815633,100.0,1.51119E-56 SIF-HHPRED:  SIF-Syn: 
    /note=frameshift

CDS 10510 - 10806
  /gene="16"
  /product="gp16"
  /function="tail assembly chaperone"
  /locus tag="Shaffner_16"
    /note=Original Glimmer call @bp 10510 has strength 11.01; Genemark calls start at 10510
    /note=SSC: 10510-10806 CP: no SCS: both ST: SS BLAST-Start: [tail assembly chaperone [Arthrobacter phage JuneStar]],,NCBI, q1:s103 100.0% 2.69982E-63 GAP: 38 bp gap LO: no RBS: Kibler 6, Karlin Medium, 0.672, -7.627551051726395, no F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Arthrobacter phage JuneStar]],,XEN13086,49.0,2.69982E-63 SIF-HHPRED:  SIF-Syn: 
    /note=frameshift

CDS 10823 - 13147
  /gene="17"
  /product="gp17"
  /function="tape measure protein"
  /locus tag="Shaffner_17"
    /note=Original Glimmer call @bp 10823 has strength 15.51; Genemark calls start at 10823
    /note=SSC: 10823-13147 CP: yes SCS: both ST: SS BLAST-Start: [tape measure protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 0.0 GAP: 16 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.218, -2.86135216970947, yes F: tape measure protein SIF-BLAST: ,,[tape measure protein [Arthrobacter phage JuneStar]],,XEN13087,97.9328,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 13140 - 14015
  /gene="18"
  /product="gp18"
  /function="minor tail protein"
  /locus tag="Shaffner_18"
    /note=Original Glimmer call @bp 13140 has strength 12.61; Genemark calls start at 13140
    /note=SSC: 13140-14015 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Arthrobacter phage Pumpkins]],,NCBI, q1:s1 100.0% 0.0 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.83, -2.7653702713535186, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Arthrobacter phage Pumpkins]],,XEN12900,99.3127,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 14028 - 15023
  /gene="19"
  /product="gp19"
  /function="minor tail protein"
  /locus tag="Shaffner_19"
    /note=Original Glimmer call @bp 14028 has strength 15.29; Genemark calls start at 14028
    /note=SSC: 14028-15023 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 0.0 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.229, -2.0720764396375664, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Arthrobacter phage JuneStar]],,XEN13089,100.0,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 15023 - 16144
  /gene="20"
  /product="gp20"
  /function="minor tail protein"
  /locus tag="Shaffner_20"
    /note=Original Glimmer call @bp 15023 has strength 18.89; Genemark calls start at 15023
    /note=SSC: 15023-16144 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.32, -3.9718914447963414, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Arthrobacter phage JuneStar]],,XEN13090,99.7319,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 16150 - 19755
  /gene="21"
  /product="gp21"
  /function="minor tail protein"
  /locus tag="Shaffner_21"
    /note=Original Glimmer call @bp 16150 has strength 11.73; Genemark calls start at 16150
    /note=SSC: 16150-19755 CP: no SCS: both ST: SS BLAST-Start: [minor tail protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 0.0 GAP: 5 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.676, -3.7378191248686026, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Arthrobacter phage JuneStar]],,XEN13091,97.169,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 19765 - 20106
  /gene="22"
  /product="gp22"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_22"
    /note=Original Glimmer call @bp 19765 has strength 14.57; Genemark calls start at 19765
    /note=SSC: 19765-20106 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_CASSIA_21 [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 8.91851E-71 GAP: 9 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.229, -2.0111200136961407, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_CASSIA_21 [Arthrobacter phage Cassia]],,WGH21094,98.2301,8.91851E-71 SIF-HHPRED:  SIF-Syn: 

CDS 20112 - 20384
  /gene="23"
  /product="gp23"
  /function="membrane protein"
  /locus tag="Shaffner_23"
    /note=Original Glimmer call @bp 20112 has strength 11.5; Genemark calls start at 20112
    /note=SSC: 20112-20384 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Arthrobacter phage Cassia] ],,NCBI, q1:s1 100.0% 3.1636E-57 GAP: 5 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.923, -5.56871349076728, no F: membrane protein SIF-BLAST: ,,[membrane protein [Arthrobacter phage Cassia] ],,WGH21095,100.0,3.1636E-57 SIF-HHPRED:  SIF-Syn: 

CDS 20393 - 20644
  /gene="24"
  /product="gp24"
  /function="membrane protein"
  /locus tag="Shaffner_24"
    /note=Original Glimmer call @bp 20393 has strength 15.03; Genemark calls start at 20393
    /note=SSC: 20393-20644 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 9.49646E-44 GAP: 8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.317, -3.9166971242758706, yes F: membrane protein SIF-BLAST: ,,[membrane protein [Arthrobacter phage Cassia]],,WGH21096,100.0,9.49646E-44 SIF-HHPRED:  SIF-Syn: 

CDS 20792 - 21406
  /gene="25"
  /product="gp25"
  /function="deoxynucleoside monophosphate kinase"
  /locus tag="Shaffner_25"
    /note=Original Glimmer call @bp 20792 has strength 18.12; Genemark calls start at 20792
    /note=SSC: 20792-21406 CP: yes SCS: both ST: SS BLAST-Start: [adenylate kinase [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 3.47328E-140 GAP: 147 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.442961286954254, yes F: deoxynucleoside monophosphate kinase SIF-BLAST: ,,[adenylate kinase [Arthrobacter phage Yang] ],,YP_009815642,99.0196,3.47328E-140 SIF-HHPRED:  SIF-Syn: 
    /note=big gap

CDS 21521 - 22108
  /gene="26"
  /product="gp26"
  /function="membrane protein"
  /locus tag="Shaffner_26"
    /note=Original Glimmer call @bp 21521 has strength 12.53; Genemark calls start at 21521
    /note=SSC: 21521-22108 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_CASSIA_25 [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 5.01452E-122 GAP: 114 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.585, -6.1964086969435535, no F: membrane protein SIF-BLAST: ,,[hypothetical protein SEA_CASSIA_25 [Arthrobacter phage Cassia]],,WGH21098,95.3846,5.01452E-122 SIF-HHPRED:  SIF-Syn: 
    /note=gap

CDS 22312 - 23145
  /gene="27"
  /product="gp27"
  /function="exonuclease"
  /locus tag="Shaffner_27"
    /note=Original Glimmer call @bp 22312 has strength 16.3; Genemark calls start at 22327
    /note=SSC: 22312-23145 CP: yes SCS: both-gl ST: SS BLAST-Start: [exonuclease [Arthrobacter phage Crewmate] ],,NCBI, q1:s1 100.0% 0.0 GAP: 203 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.064, -2.2763497933341483, yes F: exonuclease SIF-BLAST: ,,[exonuclease [Arthrobacter phage Crewmate] ],,YP_010678280,98.917,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 23255 - 23539
  /gene="28"
  /product="gp28"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_28"
    /note=Genemark calls start at 23255
    /note=SSC: 23255-23539 CP: yes SCS: genemark ST: SS BLAST-Start: [endonuclease VII [Arthrobacter phage Tuck]],,NCBI, q1:s40 98.9362% 3.10512E-49 GAP: 109 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.816, -6.189096607906054, no F: Hypothetical Protein SIF-BLAST: ,,[endonuclease VII [Arthrobacter phage Tuck]],,WAB10804,61.6541,3.10512E-49 SIF-HHPRED:  SIF-Syn: 
    /note=HHPRED has some good hits for Restriction Endonuclease (T4 phage), but NCBI data is not supporting it.

CDS 23536 - 23904
  /gene="29"
  /product="gp29"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_29"
    /note=Original Glimmer call @bp 23536 has strength 11.08; Genemark calls start at 23536
    /note=SSC: 23536-23904 CP: yes SCS: both ST: SS BLAST-Start: [DUF4406 domain-containing protein [Pseudarthrobacter siccitolerans] ],,NCBI, q1:s1 97.541% 1.66016E-60 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.045, -2.66590822473965, yes F: Hypothetical Protein SIF-BLAST: ,,[DUF4406 domain-containing protein [Pseudarthrobacter siccitolerans] ],,WP_083435243,84.4262,1.66016E-60 SIF-HHPRED:  SIF-Syn: 

CDS 23901 - 24305
  /gene="30"
  /product="gp30"
  /function="HNH endonuclease"
  /locus tag="Shaffner_30"
    /note=Original Glimmer call @bp 23901 has strength 14.14; Genemark calls start at 23901
    /note=SSC: 23901-24305 CP: yes SCS: both ST: SS BLAST-Start: [HNH endonuclease [Arthrobacter phage Crewmate] ],,NCBI, q1:s1 100.0% 1.97549E-91 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.501, -3.513874779476501, yes F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Arthrobacter phage Crewmate] ],,YP_010678283,100.0,1.97549E-91 SIF-HHPRED:  SIF-Syn: 

CDS 24435 - 25148
  /gene="31"
  /product="gp31"
  /function="recombination directionality factor"
  /locus tag="Shaffner_31"
    /note=Original Glimmer call @bp 24435 has strength 19.07; Genemark calls start at 24435
    /note=SSC: 24435-25148 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp30 [Arthrobacter phage Yang] ],,NCBI, q1:s1 99.5781% 6.64356E-163 GAP: 129 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.205, -4.423424636048095, no F: recombination directionality factor SIF-BLAST: ,,[hypothetical protein HOU52_gp30 [Arthrobacter phage Yang] ],,YP_009815648,97.4684,6.64356E-163 SIF-HHPRED:  SIF-Syn: 

CDS 25148 - 25294
  /gene="32"
  /product="gp32"
  /function="membrane protein"
  /locus tag="Shaffner_32"
    /note=Original Glimmer call @bp 25148 has strength 13.19; Genemark calls start at 25148
    /note=SSC: 25148-25294 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Arthrobacter phage Crewmate] ],,NCBI, q1:s1 100.0% 8.66012E-22 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.089, -4.455662434380964, yes F: membrane protein SIF-BLAST: ,,[membrane protein [Arthrobacter phage Crewmate] ],,YP_010678285,97.9167,8.66012E-22 SIF-HHPRED:  SIF-Syn: 

CDS 25370 - 25720
  /gene="33"
  /product="gp33"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_33"
    /note=Original Glimmer call @bp 25370 has strength 12.06; Genemark calls start at 25370
    /note=SSC: 25370-25720 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_PUMPKINS_32 [Arthrobacter phage Pumpkins]],,NCBI, q1:s1 100.0% 6.02221E-75 GAP: 75 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.075, -2.253486910374644, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_PUMPKINS_32 [Arthrobacter phage Pumpkins]],,XEN12915,95.6897,6.02221E-75 SIF-HHPRED:  SIF-Syn: 

CDS 25723 - 25989
  /gene="34"
  /product="gp34"
  /function="NrdH-like glutaredoxin"
  /locus tag="Shaffner_34"
    /note=Original Glimmer call @bp 25723 has strength 15.52; Genemark calls start at 25723
    /note=SSC: 25723-25989 CP: no SCS: both ST: SS BLAST-Start: [glutaredoxin [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 1.41607E-57 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.064, -2.9284886490054283, yes F: NrdH-like glutaredoxin SIF-BLAST: ,,[glutaredoxin [Arthrobacter phage Yang] ],,YP_009815651,100.0,1.41607E-57 SIF-HHPRED:  SIF-Syn: 

CDS 25986 - 26186
  /gene="35"
  /product="gp35"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_35"
    /note=Original Glimmer call @bp 25986 has strength 18.53; Genemark calls start at 25986
    /note=SSC: 25986-26186 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_35 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 2.5862E-39 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.984, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_35 [Arthrobacter phage JuneStar]],,XEN13106,100.0,2.5862E-39 SIF-HHPRED:  SIF-Syn: 

CDS 26183 - 26413
  /gene="36"
  /product="gp36"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_36"
    /note=Original Glimmer call @bp 26183 has strength 16.5; Genemark calls start at 26183
    /note=SSC: 26183-26413 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp35 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 6.33006E-46 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.601, -3.2441186272167593, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein HOU52_gp35 [Arthrobacter phage Yang] ],,YP_009815653,100.0,6.33006E-46 SIF-HHPRED:  SIF-Syn: 

CDS 26410 - 26769
  /gene="37"
  /product="gp37"
  /function="Holliday junction resolvase"
  /locus tag="Shaffner_37"
    /note=Original Glimmer call @bp 26410 has strength 16.86; Genemark calls start at 26410
    /note=SSC: 26410-26769 CP: yes SCS: both ST: SS BLAST-Start: [Holliday junction resolvase [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 3.23116E-79 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.874, -4.763756451838196, yes F: Holliday junction resolvase SIF-BLAST: ,,[Holliday junction resolvase [Arthrobacter phage JuneStar]],,XEN13108,98.3193,3.23116E-79 SIF-HHPRED:  SIF-Syn: 

CDS 27101 - 29602
  /gene="38"
  /product="gp38"
  /function="DNA primase/helicase"
  /locus tag="Shaffner_38"
    /note=Original Glimmer call @bp 27101 has strength 14.62; Genemark calls start at 27101
    /note=SSC: 27101-29602 CP: no SCS: both ST: SS BLAST-Start: [DNA primase/helicase [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 0.0 GAP: 331 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.442961286954254, yes F: DNA primase/helicase SIF-BLAST: ,,[DNA primase/helicase [Arthrobacter phage Cassia]],,WGH21110,96.8599,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 29611 - 29721
  /gene="39"
  /product="gp39"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_39"
    /note=Genemark calls start at 29611
    /note=SSC: 29611-29721 CP: yes SCS: genemark ST: SS BLAST-Start: [hypothetical protein PQE17_gp44 [Arthrobacter phage Crewmate] ],,NCBI, q1:s1 100.0% 8.31169E-16 GAP: 8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.083, -4.4057176022952405, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PQE17_gp44 [Arthrobacter phage Crewmate] ],,YP_010678295,97.2222,8.31169E-16 SIF-HHPRED:  SIF-Syn: 

CDS 29721 - 29843
  /gene="40"
  /product="gp40"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_40"
    /note=Original Glimmer call @bp 29721 has strength 4.92
    /note=SSC: 29721-29843 CP: yes SCS: glimmer ST: SS BLAST-Start: [hypothetical protein HOU52_gp40 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 5.27844E-18 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.694, -5.966914258667748, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein HOU52_gp40 [Arthrobacter phage Yang] ],,YP_009815658,100.0,5.27844E-18 SIF-HHPRED:  SIF-Syn: 

CDS 30040 - 31905
  /gene="41"
  /product="gp41"
  /function="DNA polymerase I"
  /locus tag="Shaffner_41"
    /note=Original Glimmer call @bp 30040 has strength 17.55; Genemark calls start at 30040
    /note=SSC: 30040-31905 CP: no SCS: both ST: SS BLAST-Start: [DNA polymerase I [Arthrobacter phage TforTroy]],,NCBI, q1:s1 100.0% 0.0 GAP: 196 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.442961286954254, yes F: DNA polymerase I SIF-BLAST: ,,[DNA polymerase I [Arthrobacter phage TforTroy]],,WVX88030,98.7118,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 31902 - 32204
  /gene="42"
  /product="gp42"
  /function="DNA ligase"
  /locus tag="Shaffner_42"
    /note=Original Glimmer call @bp 31902 has strength 13.75; Genemark calls start at 31902
    /note=SSC: 31902-32204 CP: no SCS: both ST: SS BLAST-Start: [DNA ligase [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 3.21684E-63 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.59, -5.4987073736983305, yes F: DNA ligase SIF-BLAST: ,,[DNA ligase [Arthrobacter phage Yang] ],,YP_009815660,98.0,3.21684E-63 SIF-HHPRED:  SIF-Syn: 

CDS 32201 - 32506
  /gene="43"
  /product="gp43"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_43"
    /note=Original Glimmer call @bp 32201 has strength 14.76; Genemark calls start at 32201
    /note=SSC: 32201-32506 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_45 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 7.22172E-63 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.722, -5.080915947802713, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_45 [Arthrobacter phage JuneStar]],,XEN13116,99.0099,7.22172E-63 SIF-HHPRED:  SIF-Syn: 

CDS 32695 - 33489
  /gene="44"
  /product="gp44"
  /function="DNA binding protein"
  /locus tag="Shaffner_44"
    /note=Original Glimmer call @bp 32695 has strength 19.34; Genemark calls start at 32695
    /note=SSC: 32695-33489 CP: yes SCS: both ST: SS BLAST-Start: [DNA binding protein [Arthrobacter phage Cassia]],,NCBI, q1:s1 99.2424% 1.36106E-165 GAP: 188 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -2.6453814847322845, yes F: DNA binding protein SIF-BLAST: ,,[DNA binding protein [Arthrobacter phage Cassia]],,WGH21117,96.1977,1.36106E-165 SIF-HHPRED:  SIF-Syn: 

CDS 33571 - 33933
  /gene="45"
  /product="gp45"
  /function="DNA binding protein"
  /locus tag="Shaffner_45"
    /note=Original Glimmer call @bp 33571 has strength 17.76; Genemark calls start at 33571
    /note=SSC: 33571-33933 CP: no SCS: both ST: SS BLAST-Start: [helix-turn-helix DNA binding domain protein [Arthrobacter phage Warda] ],,NCBI, q1:s1 100.0% 1.60892E-77 GAP: 81 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.722, -5.080915947802713, no F: DNA binding protein SIF-BLAST: ,,[helix-turn-helix DNA binding domain protein [Arthrobacter phage Warda] ],,YP_010677886,86.5672,1.60892E-77 SIF-HHPRED:  SIF-Syn: 

CDS 33959 - 34921
  /gene="46"
  /product="gp46"
  /function="DNA methyltransferase"
  /locus tag="Shaffner_46"
    /note=Original Glimmer call @bp 33959 has strength 17.89; Genemark calls start at 33959
    /note=SSC: 33959-34921 CP: yes SCS: both ST: SS BLAST-Start: [DNA methyltransferase [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: 25 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -2.996490344739583, yes F: DNA methyltransferase SIF-BLAST: ,,[DNA methyltransferase [Arthrobacter phage Yang] ],,YP_009815665,93.4375,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 35052 - 35648
  /gene="47"
  /product="gp47"
  /function="SprT-like protease"
  /locus tag="Shaffner_47"
    /note=Original Glimmer call @bp 35052 has strength 15.55; Genemark calls start at 35052
    /note=SSC: 35052-35648 CP: no SCS: both ST: SS BLAST-Start: [SprT-like protease [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 2.48778E-143 GAP: 130 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -2.707694805492614, yes F: SprT-like protease SIF-BLAST: ,,[SprT-like protease [Arthrobacter phage JuneStar]],,XEN13121,100.0,2.48778E-143 SIF-HHPRED:  SIF-Syn: 

CDS 35742 - 37160
  /gene="48"
  /product="gp48"
  /function="serine integrase"
  /locus tag="Shaffner_48"
    /note=Original Glimmer call @bp 35742 has strength 17.26; Genemark calls start at 35739
    /note=SSC: 35742-37160 CP: yes SCS: both-gl ST: SS BLAST-Start: [integrase [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: 93 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.805, -2.8970853586582503, yes F: serine integrase SIF-BLAST: ,,[integrase [Arthrobacter phage Yang] ],,YP_009815667,100.0,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 37408 - 37677
  /gene="49"
  /product="gp49"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_49"
    /note=Original Glimmer call @bp 37408 has strength 13.64; Genemark calls start at 37408
    /note=SSC: 37408-37677 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp50 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 8.1018E-53 GAP: 247 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.984, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein HOU52_gp50 [Arthrobacter phage Yang] ],,YP_009815668,100.0,8.1018E-53 SIF-HHPRED:  SIF-Syn: 

CDS 37680 - 37910
  /gene="50"
  /product="gp50"
  /function="RNA binding protein"
  /locus tag="Shaffner_50"
    /note=Original Glimmer call @bp 37680 has strength 16.9; Genemark calls start at 37680
    /note=SSC: 37680-37910 CP: no SCS: both ST: SS BLAST-Start: [RNA binding protein [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 2.27929E-46 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.064, -2.417348306996335, yes F: RNA binding protein SIF-BLAST: ,,[RNA binding protein [Arthrobacter phage JuneStar]],,XEN13124,98.6842,2.27929E-46 SIF-HHPRED:  SIF-Syn: 

CDS 37907 - 38329
  /gene="51"
  /product="gp51"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_51"
    /note=Original Glimmer call @bp 37907 has strength 20.8; Genemark calls start at 37907
    /note=SSC: 37907-38329 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein PQE13_gp52 [Arthrobacter phage Elezi] ],,NCBI, q1:s1 100.0% 2.89106E-31 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.397, -3.8116689268127657, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PQE13_gp52 [Arthrobacter phage Elezi] ],,YP_010678030,68.4211,2.89106E-31 SIF-HHPRED:  SIF-Syn: 

CDS 38326 - 38529
  /gene="52"
  /product="gp52"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_52"
    /note=Original Glimmer call @bp 38326 has strength 12.29; Genemark calls start at 38326
    /note=SSC: 38326-38529 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_56 [Arthrobacter phage JuneStar]],,NCBI, q3:s4 97.0149% 1.67113E-38 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 0.77, -7.152009625892923, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_56 [Arthrobacter phage JuneStar]],,XEN13127,95.5882,1.67113E-38 SIF-HHPRED:  SIF-Syn: 

CDS 38522 - 38959
  /gene="53"
  /product="gp53"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_53"
    /note=Original Glimmer call @bp 38522 has strength 16.61; Genemark calls start at 38522
    /note=SSC: 38522-38959 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_57 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 1.86613E-98 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.887, -2.7863799983944713, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_57 [Arthrobacter phage JuneStar]],,XEN13128,100.0,1.86613E-98 SIF-HHPRED:  SIF-Syn: 

CDS 38968 - 39162
  /gene="54"
  /product="gp54"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_54"
    /note=Original Glimmer call @bp 38968 has strength 14.04; Genemark calls start at 38968
    /note=SSC: 38968-39162 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_58 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 1.2515E-35 GAP: 8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.083, -4.4057176022952405, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_58 [Arthrobacter phage JuneStar]],,XEN13129,100.0,1.2515E-35 SIF-HHPRED:  SIF-Syn: 

CDS 39165 - 39368
  /gene="55"
  /product="gp55"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_55"
    /note=Original Glimmer call @bp 39165 has strength 19.64; Genemark calls start at 39165
    /note=SSC: 39165-39368 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_59 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 86.5672% 2.89941E-32 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.205, -4.213314289702982, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_59 [Arthrobacter phage JuneStar]],,XEN13130,83.8235,2.89941E-32 SIF-HHPRED:  SIF-Syn: 

CDS 39442 - 40410
  /gene="56"
  /product="gp56"
  /function="endolysin"
  /locus tag="Shaffner_56"
    /note=Original Glimmer call @bp 39442 has strength 18.35; Genemark calls start at 39442
    /note=SSC: 39442-40410 CP: no SCS: both ST: SS BLAST-Start: [peptidase [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 0.0 GAP: 73 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.218, -1.953940808934884, yes F: endolysin SIF-BLAST: ,,[peptidase [Arthrobacter phage Yang] ],,YP_009815677,97.205,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=doesn`t capture all coding potential, but Starterator data is very strong for this start site.

CDS 40529 - 40921
  /gene="57"
  /product="gp57"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_57"
    /note=Original Glimmer call @bp 40529 has strength 14.81; Genemark calls start at 40529
    /note=SSC: 40529-40921 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein PQE17_gp64 [Arthrobacter phage Crewmate] ],,NCBI, q2:s3 99.2308% 2.86945E-79 GAP: 118 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PQE17_gp64 [Arthrobacter phage Crewmate] ],,YP_010678315,82.9932,2.86945E-79 SIF-HHPRED:  SIF-Syn: 

CDS 41009 - 41206
  /gene="58"
  /product="gp58"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_58"
    /note=Original Glimmer call @bp 41009 has strength 20.05; Genemark calls start at 41009
    /note=SSC: 41009-41206 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_TFORTROY_61 [Arthrobacter phage TforTroy]],,NCBI, q1:s1 100.0% 3.28073E-39 GAP: 87 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_TFORTROY_61 [Arthrobacter phage TforTroy]],,WVX88049,98.4615,3.28073E-39 SIF-HHPRED:  SIF-Syn: 

CDS 41330 - 41665
  /gene="59"
  /product="gp59"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_59"
    /note=Original Glimmer call @bp 41330 has strength 18.5; Genemark calls start at 41330
    /note=SSC: 41330-41665 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_61 [Arthrobacter phage JuneStar]],,NCBI, q1:s1 100.0% 4.6577E-61 GAP: 123 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.887, -2.7863799983944713, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_61 [Arthrobacter phage JuneStar]],,XEN13132,91.8182,4.6577E-61 SIF-HHPRED:  SIF-Syn: 

CDS 41733 - 42047
  /gene="60"
  /product="gp60"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_60"
    /note=Original Glimmer call @bp 41733 has strength 17.21; Genemark calls start at 41733
    /note=SSC: 41733-42047 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_CASSIA_62 [Arthrobacter phage Cassia]],,NCBI, q1:s1 100.0% 1.46551E-64 GAP: 67 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.984, -2.442961286954254, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_CASSIA_62 [Arthrobacter phage Cassia]],,WGH21135,96.1538,1.46551E-64 SIF-HHPRED:  SIF-Syn: 

CDS 42040 - 42216
  /gene="61"
  /product="gp61"
  /function="membrane protein"
  /locus tag="Shaffner_61"
    /note=Original Glimmer call @bp 42040 has strength 14.49; Genemark calls start at 42040
    /note=SSC: 42040-42216 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Arthrobacter phage Adumb2043] ],,NCBI, q3:s2 94.8276% 4.03757E-29 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.984, -3.095100142625534, yes F: membrane protein SIF-BLAST: ,,[membrane protein [Arthrobacter phage Adumb2043] ],,YP_010677973,94.7368,4.03757E-29 SIF-HHPRED:  SIF-Syn: 

CDS 42209 - 42373
  /gene="62"
  /product="gp62"
  /function="membrane protein"
  /locus tag="Shaffner_62"
    /note=Original Glimmer call @bp 42209 has strength 15.19; Genemark calls start at 42209
    /note=SSC: 42209-42373 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp64 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 7.77557E-29 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.984, -2.5052746077145835, yes F: membrane protein SIF-BLAST: ,,[hypothetical protein HOU52_gp64 [Arthrobacter phage Yang] ],,YP_009815682,96.2963,7.77557E-29 SIF-HHPRED:  SIF-Syn: 

CDS 42370 - 42486
  /gene="63"
  /product="gp63"
  /function="membrane protein"
  /locus tag="Shaffner_63"
    /note=Original Glimmer call @bp 42370 has strength 16.43; Genemark calls start at 42370
    /note=SSC: 42370-42486 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein HOU52_gp65 [Arthrobacter phage Yang] ],,NCBI, q1:s1 100.0% 4.7326E-15 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.839, -4.976656753876107, yes F: membrane protein SIF-BLAST: ,,[hypothetical protein HOU52_gp65 [Arthrobacter phage Yang] ],,YP_009815683,97.3684,4.7326E-15 SIF-HHPRED:  SIF-Syn: 
    /note=not all coding potential captured, but best final score

CDS 42471 - 42779
  /gene="64"
  /product="gp64"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_64"
    /note=Original Glimmer call @bp 42471 has strength 3.19; Genemark calls start at 42471
    /note=SSC: 42471-42779 CP: yes SCS: both ST: SS BLAST-Start: [endonuclease VII [Arthrobacter phage Crewmate] ],,NCBI, q1:s1 100.0% 2.81598E-41 GAP: -16 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.418, -3.9764835383098616, yes F: Hypothetical Protein SIF-BLAST: ,,[endonuclease VII [Arthrobacter phage Crewmate] ],,YP_010678323,85.2941,2.81598E-41 SIF-HHPRED:  SIF-Syn: 

CDS 43052 - 43240
  /gene="65"
  /product="gp65"
  /function="Hypothetical Protein"
  /locus tag="Shaffner_65"
    /note=Original Glimmer call @bp 43052 has strength 12.33; Genemark calls start at 43052
    /note=SSC: 43052-43240 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_JUNESTAR_67 [Arthrobacter phage JuneStar]],,NCBI, q1:s3 100.0% 1.61585E-35 GAP: 272 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.218, -2.86135216970947, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_JUNESTAR_67 [Arthrobacter phage JuneStar]],,XEN13138,96.875,1.61585E-35 SIF-HHPRED:  SIF-Syn: