CDS 330 - 446 /gene="1" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_1" /note=Original Glimmer call @bp 330 has strength 12.98; Genemark calls start at 336 /note=SSC: Start = 330, Stop = 446. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.631 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 117 bp is the longest possible ORF. GAP: 0 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 1, Function= function unknown, EValue= 3.0E-15. NCBIBLAST= PhageName= hypothetical protein AVT12_gp01 [Mycobacterium phage Equemioh13] >ref|YP_010063617.1| hypothetical protein KIY82_gp01 [Mycobacterium phage Centaur] >gb|AMB18491.1| hypothetical protein NASIATALIE_1 [Mycobacterium phage NaSiaTalie] >gb|AOZ63945.1| hypothetical protein SEA_BAEHEXIC_1 [Mycobacterium phage Baehexic] >gb|ASZ72791.1| hypothetical protein SEA_DRAKE55_1 [Mycobacterium phage Drake55] >gb|ATN92248.1| hypothetical protein SEA_UPDAWG_1 [Mycobacterium phage Updawg] >gb|AYD86276.1| hypothetical protein SEA_FLARE16_1 [Mycobacterium phage Flare16] >gb|QDM57203.1| hypothetical protein SEA_WIDEWALE_1 [Mycobacterium phage WideWale] >gb|QXN74030.1| hypothetical protein SEA_MICULUCIGAS_1 [Mycobacterium Phage MiculUcigas] >gb|UJD20930.1| hypothetical protein SEA_HARRYHOUDINI_1 [Mycobacterium phage HarryHoudini], Coverage= 100.0, SubjectRange= 1:38, QueryRange= 1:38, EValue= 6.63263E-17. HHPRED= . CDD= . CDS 642 - 1376 /gene="2" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_2" /note=Genemark calls start at 642 /note=SSC: Start = 642, Stop = 1376. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.7 is the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 735 bp is the longest possible ORF. GAP: 195 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 2, Function= function unknown, EValue= 1.0E-147. NCBIBLAST= PhageName= nuclease [Mycobacterium phage Equemioh13] >ref|YP_010063618.1| nuclease [Mycobacterium phage Centaur] >gb|ATN92249.1| hypothetical protein SEA_UPDAWG_2 [Mycobacterium phage Updawg] >gb|AYD86277.1| hypothetical protein SEA_FLARE16_2 [Mycobacterium phage Flare16] >gb|QDM57204.1| hypothetical protein SEA_WIDEWALE_2 [Mycobacterium phage WideWale] >gb|QXN74031.1| hypothetical protein SEA_MICULUCIGAS_2 [Mycobacterium Phage MiculUcigas] >gb|AIT13319.1| VIP2 protein [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:244, QueryRange= 1:244, EValue= 0.0. HHPRED= Accession= PF14386.11, Description= DUF4417 ; Domain of unknown function (DUF4417), Probability= 100.0. Coverage= 75.8197, SubjectRange= 1:187, QueryRange= 1:211. CDD= Accession= pfam14386, Coverage= 73.3607, SubjectRange= 4:182, QueryRange= 4:211, EValue= 0.0. CDS 1312 - 2313 /gene="3" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_3" /note=Original Glimmer call @bp 1303 has strength 8.18; Genemark calls start at 1312 /note=SSC: Start = 1312, Stop = 2313. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.312 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 1002 bp is not the longest possible ORF. GAP: -65 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 3, Function= VIP2-like toxin, EValue= 0.0. NCBIBLAST= PhageName= VIP2-like toxin [Mycobacterium phage Flare16], Coverage= 100.0, SubjectRange= 1:333, QueryRange= 1:333, EValue= 0.0. HHPRED= Accession= 3B21_A, Description= ORF169b; Shigella, Bacterial protein, effector, type 3 secretion system, UNKNOWN FUNCTION; 2.01A {Shigella flexneri}, Probability= 99.4. Coverage= 46.8468, SubjectRange= 55:207, QueryRange= 55:252. CDD= Accession= pfam15644, Coverage= 31.8318, SubjectRange= 2:111, QueryRange= 2:220, EValue= 2.33189E-11. CDS 2313 - 2627 /gene="4" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_4" /note=Original Glimmer call @bp 2313 has strength 9.91; Genemark calls start at 2292 /note=SSC: Start = 2313, Stop = 2627. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 315 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 4, Function= function unknown, EValue= 1.0E-57. NCBIBLAST= PhageName= hypothetical protein NASIATALIE_4 [Mycobacterium phage NaSiaTalie] >gb|AYD86279.1| hypothetical protein SEA_FLARE16_4 [Mycobacterium phage Flare16] >gb|QXN74033.1| hypothetical protein SEA_MICULUCIGAS_4 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:104, QueryRange= 1:104, EValue= 8.95871E-67. HHPRED= Accession= PF15567.11, Description= Imm35 ; Immunity protein 35, Probability= 99.5. Coverage= 53.8462, SubjectRange= 23:74, QueryRange= 23:84. CDD= . /note=Could be an immunity protein- but not strong enough data to call as such CDS 2624 - 2920 /gene="5" /product="HNH endonuclease" /function="HNH endonuclease" /locus tag="Sknot_5" /note=Original Glimmer call @bp 2624 has strength 0.65 /note=SSC: Start = 2624, Stop = 2920. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.471 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 297 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: HNH endonuclease. FS: PHDBLAST= PhageName= Benvolio, ProteinNumber= 5, Function= HNH endonuclease, EValue= 9.0E-56. NCBIBLAST= PhageName= HNH endonuclease [Mycobacterium phage Larenn] >ref|YP_010063621.1| HNH endonuclease [Mycobacterium phage Centaur] >ref|YP_010064097.1| HNH endonuclease [Mycobacterium phage Malec] >gb|AMB18495.1| HNH endonuclease [Mycobacterium phage NaSiaTalie] >gb|AYD86280.1| HNH endonuclease [Mycobacterium phage Flare16] >gb|QXN74034.1| HNH endonuclease [Mycobacterium Phage MiculUcigas] >gb|AIW02901.1| HNH endonuclease [Mycobacterium phage Larenn] >gb|AZF93390.1| HNH endonuclease [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:98, QueryRange= 1:98, EValue= 1.81928E-64. HHPRED= Accession= 8ZOL_B, Description= CRISPR system Cascade subunit CasD; Cryo-EM strcuture, Cascade, CRISPR-Cas, IMMUNE SYSTEM/RNA, IMMUNE SYSTEM-RNA complex; 2.55A {Candidatus Cloacimonetes bacterium ADurb.Bin088}, Probability= 96.6. Coverage= 71.4286, SubjectRange= 274:342, QueryRange= 274:77. CDD= Accession= COG1403, Coverage= 48.9796, SubjectRange= 14:64, QueryRange= 14:71, EValue= 3.0482E-5. CDS 2959 - 3429 /gene="6" /product="terminase, small subunit" /function="terminase, small subunit" /locus tag="Sknot_6" /note=Original Glimmer call @bp 2959 has strength 8.2; Genemark calls start at 2959 /note=SSC: Start = 2959, Stop = 3429. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.955 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 471 bp is the longest possible ORF. GAP: 38 bp. ST: SS=NA. F: terminase, small subunit. FS: PHDBLAST= PhageName= Drake55, ProteinNumber= 6, Function= terminase small subunit, EValue= 6.0E-85. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage Piro94] >ref|YP_009203276.1| minor tail protein [Mycobacterium phage Equemioh13] >ref|YP_010063622.1| minor tail protein [Mycobacterium phage Centaur] >gb|AMB18496.1| hypothetical protein NASIATALIE_6 [Mycobacterium phage NaSiaTalie] >gb|AOZ63950.1| terminase small subunit [Mycobacterium phage Baehexic] >gb|ASZ72796.1| terminase small subunit [Mycobacterium phage Drake55] >gb|ATN92252.1| hypothetical protein SEA_UPDAWG_6 [Mycobacterium phage Updawg] >gb|AYD86281.1| hypothetical protein SEA_FLARE16_6 [Mycobacterium phage Flare16] >gb|QDM57208.1| hypothetical protein SEA_WIDEWALE_6 [Mycobacterium phage WideWale] >gb|QXN74035.1| terminase small subunit [Mycobacterium Phage MiculUcigas] , Coverage= 100.0, SubjectRange= 1:156, QueryRange= 1:156, EValue= 7.68479E-110. HHPRED= Accession= 6Z6E_A, Description= Terminase small subunit; genome packaging, bacteriophage, DNA binding, VIRAL PROTEIN; 1.4A {Enterobacteria phage HK97}, Probability= 98.2. Coverage= 54.4872, SubjectRange= 24:124, QueryRange= 24:120. CDD= . CDS 3515 - 4480 /gene="7" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_7" /note=Original Glimmer call @bp 3515 has strength 13.93; Genemark calls start at 3515 /note=SSC: Start = 3515, Stop = 4480. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.964 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 966 bp is the longest possible ORF. GAP: 85 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 7, Function= function unknown, EValue= 0.0. NCBIBLAST= PhageName= hypothetical protein SEA_FLARE16_7 [Mycobacterium phage Flare16], Coverage= 100.0, SubjectRange= 1:321, QueryRange= 1:321, EValue= 0.0. HHPRED= Accession= 9D93_Mf, Description= Minor tail protein; Bacteriophage, tail tip, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.9. Coverage= 88.4735, SubjectRange= 281:647, QueryRange= 281:301. CDD= . /note=high level match in hhpred to minor tail protein, but in wrong position in genome. CDS 4591 - 4749 /gene="8" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_8" /note=Original Glimmer call @bp 4591 has strength 16.01; Genemark calls start at 4591 /note=SSC: Start = 4591, Stop = 4749. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.934 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 159 bp is the longest possible ORF. GAP: 110 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 8, Function= function unknown, EValue= 3.0E-22. NCBIBLAST= PhageName= hypothetical protein SEA_BAEHEXIC_9 [Mycobacterium phage Baehexic] >gb|AYD86283.1| hypothetical protein SEA_FLARE16_8 [Mycobacterium phage Flare16] >gb|QXN74037.1| hypothetical protein SEA_MICULUCIGAS_8 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:52, QueryRange= 1:52, EValue= 2.53001E-26. HHPRED= Accession= 6IJE_A, Description= Tai4; ANTITOXIN; HET: EDO; 1.55A {Rhizobium radiobacter}, Probability= 88.8. Coverage= 78.8462, SubjectRange= 67:102, QueryRange= 67:50. CDD= . CDS 4749 - 6053 /gene="9" /product="lysin A" /function="lysin A" /locus tag="Sknot_9" /note=Original Glimmer call @bp 4749 has strength 7.77; Genemark calls start at 4749 /note=SSC: Start = 4749, Stop = 6053. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.126 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 1305 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: lysin A. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 9, Function= lysin A, EValue= 0.0. NCBIBLAST= PhageName= lysin A [Mycobacterium phage Flare16] >gb|QXN74038.1| lysin A [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:434, QueryRange= 1:434, EValue= 0.0. HHPRED= Accession= 8AUC_B, Description= Cell wall-associated hydrolases (Invasion-associated proteins); bacterial cell division peptidoglycan hydrolysis, regulatory protein, CELL CYCLE; 3.5A {Corynebacterium glutamicum ATCC 13032}, Probability= 70.7. Coverage= 32.2581, SubjectRange= 463:582, QueryRange= 463:148. CDD= Accession= pfam06737, Coverage= 19.1244, SubjectRange= 1:71, QueryRange= 1:278, EValue= 3.36703E-9. /note=based on synteny, positioning of gene in genome and phamerator evidence of conserved domains of RPR and Lt-TF_like I am calling function as lysin A CDS 6050 - 6487 /gene="10" /product="holin" /function="holin" /locus tag="Sknot_10" /note=Original Glimmer call @bp 6050 has strength 12.37; Genemark calls start at 6050 /note=SSC: Start = 6050, Stop = 6487. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.621 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 438 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: holin. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 10, Function= holin, EValue= 1.0E-75. NCBIBLAST= PhageName= holin [Mycobacterium phage NaSiaTalie] >gb|AYD86285.1| holin [Mycobacterium phage Flare16], Coverage= 100.0, SubjectRange= 1:145, QueryRange= 1:145, EValue= 8.32886E-95. HHPRED= Accession= PF16081.10, Description= Phage_holin_7_1 ; Mycobacterial 2 TMS Phage Holin (M2 Hol) Family, Probability= 100.0. Coverage= 85.5172, SubjectRange= 1:120, QueryRange= 1:128. CDD= Accession= pfam16081, Coverage= 86.8966, SubjectRange= 1:121, QueryRange= 1:129, EValue= 1.60689E-37. CDS 6484 - 7461 /gene="11" /product="lysin B" /function="lysin B" /locus tag="Sknot_11" /note=Original Glimmer call @bp 6484 has strength 12.74; Genemark calls start at 6484 /note=SSC: Start = 6484, Stop = 7461. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.439 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 978 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: lysin B. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 11, Function= lysin B, EValue= 0.0. NCBIBLAST= PhageName= lysin B [Mycobacterium phage NaSiaTalie], Coverage= 100.0, SubjectRange= 1:325, QueryRange= 1:325, EValue= 0.0. HHPRED= Accession= 3HC7_A, Description= Gene 12 protein; alpha/beta sandwich, CELL ADHESION; 2.0A {Mycobacterium phage D29}, Probability= 100.0. Coverage= 78.4615, SubjectRange= 2:254, QueryRange= 2:325. CDD= Accession= pfam08237, Coverage= 25.5385, SubjectRange= 10:95, QueryRange= 10:192, EValue= 0.00699234. CDS 7484 - 9271 /gene="12" /product="terminase" /function="terminase" /locus tag="Sknot_12" /note=Original Glimmer call @bp 7484 has strength 10.94; Genemark calls start at 7592 /note=SSC: Start = 7484, Stop = 9271. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 1788 bp is not the longest possible ORF. GAP: 22 bp. ST: SS=NA. F: terminase. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 12, Function= terminase, EValue= 0.0. NCBIBLAST= PhageName= terminase large subunit [Mycobacterium phage Centaur] >gb|AMB18502.1| terminase large subunit [Mycobacterium phage NaSiaTalie] >gb|AOZ63957.1| terminase large subunit [Mycobacterium phage Baehexic] >gb|AYD86287.1| terminase [Mycobacterium phage Flare16] >gb|QXN74041.1| terminase [Mycobacterium Phage MiculUcigas] >gb|AZF93398.1| terminase [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:595, QueryRange= 1:595, EValue= 0.0. HHPRED= Accession= 6Z6D_A, Description= Terminase large subunit; genome packaging, bacteriophage, ATPase, nuclease, VIRAL PROTEIN; HET: BR; 2.2A {Enterobacteria phage HK97}, Probability= 100.0. Coverage= 92.1008, SubjectRange= 11:501, QueryRange= 11:585. CDD= Accession= COG4626, Coverage= 82.8571, SubjectRange= 82:541, QueryRange= 82:580, EValue= 6.19056E-30. CDS 9268 - 10728 /gene="13" /product="portal protein" /function="portal protein" /locus tag="Sknot_13" /note=Original Glimmer call @bp 9268 has strength 11.08; Genemark calls start at 9268 /note=SSC: Start = 9268, Stop = 10728. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.181 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 1461 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: portal protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 15, Function= portal protein, EValue= 0.0. NCBIBLAST= PhageName= portal protein [Mycobacterium phage Piro94] >ref|YP_009203284.1| portal protein [Mycobacterium phage Equemioh13] >ref|YP_010063630.1| portal protein [Mycobacterium phage Centaur] >gb|AMB18503.1| portal protein [Mycobacterium phage NaSiaTalie] >gb|AOZ63958.1| portal protein [Mycobacterium phage Baehexic] >gb|ATN92256.1| portal protein [Mycobacterium phage Updawg] >gb|AYD86288.1| portal protein [Mycobacterium phage Flare16] >gb|QDM57216.1| portal protein [Mycobacterium phage WideWale] >gb|QXN74042.1| portal protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:486, QueryRange= 1:486, EValue= 0.0. HHPRED= Accession= 9D94_Fd, Description= Portal protein; Bacteriophage, portal, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 100.0. Coverage= 89.3004, SubjectRange= 9:454, QueryRange= 9:448. CDD= Accession= pfam05133, Coverage= 79.4239, SubjectRange= 43:412, QueryRange= 43:447, EValue= 3.58441E-26. CDS 10758 - 11609 /gene="14" /product="capsid maturation protease" /function="capsid maturation protease" /locus tag="Sknot_14" /note=Original Glimmer call @bp 10758 has strength 5.26; Genemark calls start at 10758 /note=SSC: Start = 10758, Stop = 11609. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.193 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 852 bp is the longest possible ORF. GAP: 29 bp. ST: SS=NA. F: capsid maturation protease. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 16, Function= capsid maturation protease, EValue= 1.0E-164. NCBIBLAST= PhageName= head maturation protease [Mycobacterium phage Piro94] >ref|YP_009203285.1| head maturation protease [Mycobacterium phage Equemioh13] >ref|YP_010063631.1| head maturation protease [Mycobacterium phage Centaur] >gb|AMB18504.1| capsid maturation protein [Mycobacterium phage NaSiaTalie] >gb|AOZ63959.1| capsid maturation protease [Mycobacterium phage Baehexic] >gb|ASZ72805.1| capsid maturation protease [Mycobacterium phage Drake55] >gb|ATN92257.1| capsid maturation protease [Mycobacterium phage Updawg] >gb|AYD86289.1| capsid maturation protease [Mycobacterium phage Flare16] >gb|QDM57217.1| capsid maturation protease [Mycobacterium phage WideWale] >gb|QXN74043.1| capsid maturation protease [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:283, QueryRange= 1:283, EValue= 0.0. HHPRED= Accession= PF06152.16, Description= Phage_min_cap2 ; Phage minor capsid protein 2, Probability= 96.6. Coverage= 60.0707, SubjectRange= 192:332, QueryRange= 192:269. CDD= . CDS 11659 - 12183 /gene="15" /product="scaffolding protein" /function="scaffolding protein" /locus tag="Sknot_15" /note=Original Glimmer call @bp 11659 has strength 9.38; Genemark calls start at 11659 /note=SSC: Start = 11659, Stop = 12183. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.955 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 525 bp is not the longest possible ORF. GAP: 49 bp. ST: SS=NA. F: scaffolding protein. FS: PHDBLAST= . NCBIBLAST= PhageName= head scaffolding protein [Mycobacterium phage Equemioh13] >ref|YP_010063632.1| head scaffolding protein [Mycobacterium phage Centaur] >gb|AMB18505.1| scaffolding protein [Mycobacterium phage NaSiaTalie] >gb|ATN92258.1| scaffolding protein [Mycobacterium phage Updawg] >gb|AYD86290.1| scaffolding protein [Mycobacterium phage Flare16] >gb|QDM57218.1| scaffolding protein [Mycobacterium phage WideWale] >gb|QXN74044.1| scaffolding protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:174, QueryRange= 1:174, EValue= 4.75925E-122. HHPRED= Accession= 6B0X_g, Description= Scaffold protein; major capsid protein, HK97-like fold, scaffolding protein, procapsid, VIRUS; 3.8A {Staphylococcus phage 80alpha}, Probability= 98.1. Coverage= 61.4943, SubjectRange= 51:164, QueryRange= 51:136. CDD= . CDS 12213 - 13169 /gene="16" /product="major capsid protein" /function="major capsid protein" /locus tag="Sknot_16" /note=Original Glimmer call @bp 12213 has strength 18.17; Genemark calls start at 12213 /note=SSC: Start = 12213, Stop = 13169. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 957 bp is the longest possible ORF. GAP: 29 bp. ST: SS=NA. F: major capsid protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 16, Function= major capsid protein, EValue= 0.0. NCBIBLAST= PhageName= major capsid protein [Mycobacterium phage Equemioh13] >ref|YP_010063633.1| major capsid protein [Mycobacterium phage Centaur] >gb|ATN92259.1| major capsid protein [Mycobacterium phage Updawg] >gb|AYD86291.1| major capsid protein [Mycobacterium phage Flare16] >gb|QDM57219.1| major capsid protein [Mycobacterium phage WideWale] >gb|QXN74045.1| major capsid protein [Mycobacterium Phage MiculUcigas] >gb|AIT13334.1| major capsid protein [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:318, QueryRange= 1:318, EValue= 0.0. HHPRED= Accession= 8ECK_C, Description= Major capsid protein; HK97-fold, T=7, tailed bacteriophage, VIRUS; 2.6A {Gordonia phage Cozz}, Probability= 100.0. Coverage= 99.3711, SubjectRange= 1:316, QueryRange= 1:317. CDD= Accession= pfam05065, Coverage= 89.9371, SubjectRange= 1:272, QueryRange= 1:313, EValue= 4.60487E-17. CDS 13239 - 13418 /gene="17" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_17" /note=Original Glimmer call @bp 13239 has strength 6.69; Genemark calls start at 13239 /note=SSC: Start = 13239, Stop = 13418. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.631 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 180 bp is the longest possible ORF. GAP: 69 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= WideWale, ProteinNumber= 19, Function= function unknown, EValue= 4.0E-28. NCBIBLAST= PhageName= head-tail connector protein [Mycobacterium phage Piro94] >ref|YP_009203288.1| head-tail connector protein [Mycobacterium phage Equemioh13] >gb|AMB18507.1| head-to-tail connector protein [Mycobacterium phage NaSiaTalie] >gb|AOZ63962.1| head-to-tail connector protein [Mycobacterium phage Baehexic] >gb|ATN92286.1| head-to-tail connector protein [Mycobacterium phage Updawg] >gb|AYD86292.1| head-to-tail connector complex protein [Mycobacterium phage Flare16] >gb|QDM57220.1| hypothetical protein SEA_WIDEWALE_19 [Mycobacterium phage WideWale] >gb|QXN74046.1| hypothetical protein SEA_MICULUCIGAS_17 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:59, QueryRange= 1:59, EValue= 3.22513E-33. HHPRED= . CDD= . CDS 13422 - 13799 /gene="18" /product="head-to-tail adaptor" /function="head-to-tail adaptor" /locus tag="Sknot_18" /note=Original Glimmer call @bp 13422 has strength 11.81; Genemark calls start at 13422 /note=SSC: Start = 13422, Stop = 13799. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.877 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 378 bp is the longest possible ORF. GAP: 3 bp. ST: SS=NA. F: head-to-tail adaptor. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 20, Function= head-to-tail adaptor, EValue= 3.0E-65. NCBIBLAST= PhageName= head-tail adaptor Ad1 [Mycobacterium phage Piro94] >ref|YP_009203289.1| head-tail adaptor Ad1 [Mycobacterium phage Equemioh13] >ref|YP_010063635.1| head-tail adaptor Ad1 [Mycobacterium phage Centaur] >gb|AMB18508.1| head-to-tail adaptor [Mycobacterium phage NaSiaTalie] >gb|ASZ72809.1| head-to-tail adaptor [Mycobacterium phage Drake55] >gb|ATN92287.1| head-to-tail adaptor [Mycobacterium phage Updawg] >gb|AYD86293.1| head-to-tail adaptor [Mycobacterium phage Flare16] >gb|QDM57221.1| head-to-tail adaptor [Mycobacterium phage WideWale] >gb|QXN74047.1| head-to-tail adaptor [Mycobacterium Phage MiculUcigas] >gb|UJD20948.1| head-to-tail adaptor [Mycobacterium phage HarryHoudini], Coverage= 100.0, SubjectRange= 1:125, QueryRange= 1:125, EValue= 2.15691E-84. HHPRED= Accession= 9D94_Ga, Description= Head-to-tail adaptor; Bacteriophage, portal, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.9. Coverage= 98.4, SubjectRange= 2:124, QueryRange= 2:124. CDD= Accession= pfam09355, Coverage= 84.0, SubjectRange= 1:113, QueryRange= 1:117, EValue= 6.76328E-35. CDS 13796 - 13990 /gene="19" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_19" /note=Original Glimmer call @bp 13796 has strength 8.24; Genemark calls start at 13796 /note=SSC: Start = 13796, Stop = 13990. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.287 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 195 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 19, Function= head-to-tail connector complex protein, EValue= 4.0E-33. NCBIBLAST= PhageName= head-tail connector protein [Mycobacterium phage Piro94] >ref|YP_009203290.1| head-tail connector protein [Mycobacterium phage Equemioh13] >ref|YP_010063636.1| head-tail connector protein [Mycobacterium phage Centaur] >gb|AMB18509.1| head-to-tail connector protein [Mycobacterium phage NaSiaTalie] >gb|ATN92288.1| head-to-tail connector protein [Mycobacterium phage Updawg] >gb|AYD86294.1| head-to-tail connector complex protein [Mycobacterium phage Flare16] >gb|QDM57222.1| hypothetical protein SEA_WIDEWALE_21 [Mycobacterium phage WideWale] >gb|QXN74048.1| hypothetical protein SEA_MICULUCIGAS_19 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:64, QueryRange= 1:64, EValue= 7.13929E-38. HHPRED= . CDD= . CDS 13990 - 14358 /gene="20" /product="head-to-tail stopper" /function="head-to-tail stopper" /locus tag="Sknot_20" /note=Original Glimmer call @bp 13990 has strength 11.56; Genemark calls start at 13990 /note=SSC: Start = 13990, Stop = 14358. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.9 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 369 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: head-to-tail stopper. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 22, Function= head-to-tail stopper, EValue= 6.0E-67. NCBIBLAST= PhageName= head closure Hc1 [Mycobacterium phage Piro94] >ref|YP_009203291.1| head closure Hc1 [Mycobacterium phage Equemioh13] >ref|YP_010063637.1| head closure Hc1 [Mycobacterium phage Centaur] >gb|AMB18510.1| head-to-tail stopper [Mycobacterium phage NaSiaTalie] >gb|ASZ72811.1| head-to-tail stopper [Mycobacterium phage Drake55] >gb|ATN92289.1| head-to-tail stopper [Mycobacterium phage Updawg] >gb|AYD86295.1| head-to-tail stopper [Mycobacterium phage Flare16] >gb|QDM57223.1| head-to-tail stopper [Mycobacterium phage WideWale] >gb|QXN74049.1| head-to-tail stopper [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:122, QueryRange= 1:122, EValue= 2.91184E-85. HHPRED= Accession= 9D94_Hc, Description= Head-to-tail stopper; Bacteriophage, portal, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.8. Coverage= 99.1803, SubjectRange= 1:126, QueryRange= 1:122. CDD= . CDS 14358 - 14693 /gene="21" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_21" /note=Original Glimmer call @bp 14358 has strength 11.32; Genemark calls start at 14358 /note=SSC: Start = 14358, Stop = 14693. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.062 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 336 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 23, Function= function unknown, EValue= 1.0E-58. NCBIBLAST= PhageName= tail completion or Neck1 protein [Mycobacterium phage Piro94] >ref|YP_009203292.1| tail completion or Neck1 protein [Mycobacterium phage Equemioh13] >ref|YP_010063638.1| tail completion or Neck1 protein [Mycobacterium phage Centaur] >gb|AMB18511.1| head-to-tail connector protein [Mycobacterium phage NaSiaTalie] >gb|AOZ63966.1| head-to-tail connector protein [Mycobacterium phage Baehexic] >gb|ATN92281.1| head-to-tail connector protein [Mycobacterium phage Updawg] >gb|AYD86296.1| head-to-tail connector complex protein [Mycobacterium phage Flare16] >gb|QDM57224.1| hypothetical protein SEA_WIDEWALE_23 [Mycobacterium phage WideWale] >gb|QXN74050.1| hypothetical protein SEA_MICULUCIGAS_21 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:111, QueryRange= 1:111, EValue= 1.13826E-74. HHPRED= Accession= PF11114.13, Description= Minor_capsid_2 ; Minor capsid protein, Probability= 92.5. Coverage= 71.1712, SubjectRange= 1:70, QueryRange= 1:81. CDD= Accession= pfam17395, Coverage= 69.3694, SubjectRange= 4:74, QueryRange= 4:81, EValue= 3.42189E-5. CDS 14703 - 15131 /gene="22" /product="tail terminator" /function="tail terminator" /locus tag="Sknot_22" /note=Original Glimmer call @bp 14703 has strength 8.08; Genemark calls start at 14769 /note=SSC: Start = 14703, Stop = 15131. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.274 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 429 bp is the longest possible ORF. GAP: 9 bp. ST: SS=NA. F: tail terminator. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 24, Function= tail terminator, EValue= 1.0E-77. NCBIBLAST= PhageName= tail terminator [Mycobacterium phage Piro94] >ref|YP_009203293.1| tail terminator [Mycobacterium phage Equemioh13] >ref|YP_010063639.1| tail terminator [Mycobacterium phage Centaur] >gb|AMB18512.1| tail terminator [Mycobacterium phage NaSiaTalie] >gb|AOZ63967.1| tail terminator [Mycobacterium phage Baehexic] >gb|ATN92282.1| tail terminator [Mycobacterium phage Updawg] >gb|AYD86297.1| tail terminator [Mycobacterium phage Flare16] >gb|QDM57225.1| tail terminator [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:142, QueryRange= 1:142, EValue= 2.43152E-98. HHPRED= Accession= 9D94_Ic, Description= Tail terminator; Bacteriophage, portal, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.9. Coverage= 95.7747, SubjectRange= 1:147, QueryRange= 1:138. CDD= . CDS 15150 - 15740 /gene="23" /product="major tail protein" /function="major tail protein" /locus tag="Sknot_23" /note=Original Glimmer call @bp 15150 has strength 15.84; Genemark calls start at 15150 /note=SSC: Start = 15150, Stop = 15740. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.737 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 591 bp is the longest possible ORF. GAP: 18 bp. ST: SS=NA. F: major tail protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 23, Function= major tail protein, EValue= 1.0E-112. NCBIBLAST= PhageName= major tail protein [Mycobacterium phage Piro94] >ref|YP_009203294.1| major tail protein [Mycobacterium phage Equemioh13] >gb|AMB18513.1| major tail protein [Mycobacterium phage NaSiaTalie] >gb|AOZ63968.1| major tail protein [Mycobacterium phage Baehexic] >gb|ATN92283.1| major tail protein [Mycobacterium phage Updawg] >gb|AYD86298.1| major tail protein [Mycobacterium phage Flare16] >gb|QDM57226.1| major tail protein [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:196, QueryRange= 1:196, EValue= 2.52174E-140. HHPRED= Accession= 9D9L_J, Description= Major tail protein; Bacteriophage, tail tube, VIRUS, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.9. Coverage= 96.9388, SubjectRange= 1:190, QueryRange= 1:191. CDD= . CDS 15854 - 16258 /gene="24" /product="tail assembly chaperone" /function="tail assembly chaperone" /locus tag="Sknot_24" /note=Original Glimmer call @bp 15854 has strength 15.05; Genemark calls start at 15854 /note=SSC: Start = 15854, Stop = 16258. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.535 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 405 bp is not the longest possible ORF. GAP: 113 bp. ST: SS=NA. F: tail assembly chaperone. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 24, Function= tail assembly chaperone, EValue= 6.0E-70. NCBIBLAST= PhageName= tail assembly chaperone [Mycobacterium phage Piro94] >ref|YP_009203296.1| tail assembly chaperone [Mycobacterium phage Equemioh13] >gb|AMB18515.1| tail assembly chaperone [Mycobacterium phage NaSiaTalie] >gb|AOZ63969.1| tail assembly chaperone [Mycobacterium phage Baehexic] >gb|ATN92284.1| tail assembly chaperone [Mycobacterium phage Updawg] >gb|AYD86299.1| tail assembly chaperone [Mycobacterium phage Flare16] >gb|QDM57227.1| tail assembly chaperone [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:134, QueryRange= 1:134, EValue= 7.22599E-89. HHPRED= Accession= PF17388.7, Description= GP24_25 ; Mycobacteriophage tail assembly protein, Probability= 100.0. Coverage= 95.5224, SubjectRange= 1:126, QueryRange= 1:129. CDD= Accession= pfam17388, Coverage= 96.2687, SubjectRange= 1:123, QueryRange= 1:129, EValue= 5.11956E-29. CDS join(15854..16234,16234..16683) /gene="25" /product="tail assembly chaperone" /function="tail assembly chaperone" /locus tag="Sknot_25" /note= /note=SSC: Start = 15854, Stop = 16683. (Forward). CP: Does not contain all GeneMarkHost capacity. SD: ZScore 2.535 is not the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 831 bp is not the longest possible ORF. GAP: -405 bp. ST: SS=NA. F: tail assembly chaperone. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 25, Function= tail assembly chaperone, EValue= 1.0E-156. NCBIBLAST= PhageName= tail assembly chaperone [Mycobacterium phage Piro94] >ref|YP_009203295.1| tail assembly chaperone [Mycobacterium phage Equemioh13] >gb|AOZ63970.1| tail assembly chaperone [Mycobacterium phage Baehexic] >gb|ATN92285.1| tail assembly chaperone [Mycobacterium phage Updawg] >gb|AYD86300.1| tail assembly chaperone [Mycobacterium phage Flare16] >gb|QDM57228.1| tail assembly chaperone [Mycobacterium phage WideWale] >gb|AIK67742.1| tail assembly chaperone [Mycobacterium phage Piro94], Coverage= 100.0, SubjectRange= 1:276, QueryRange= 1:276, EValue= 0.0. HHPRED= Accession= PF17388.7, Description= GP24_25 ; Mycobacteriophage tail assembly protein, Probability= 100.0. Coverage= 46.3768, SubjectRange= 1:126, QueryRange= 1:129. CDD= Accession= pfam17388, Coverage= 46.7391, SubjectRange= 1:123, QueryRange= 1:129, EValue= 3.1443E-29. CDS 16673 - 19180 /gene="26" /product="tape measure protein" /function="tape measure protein" /locus tag="Sknot_26" /note=Original Glimmer call @bp 16673 has strength 12.67; Genemark calls start at 16673 /note=SSC: Start = 16673, Stop = 19180. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.757 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 2508 bp is the longest possible ORF. GAP: -12 bp. ST: SS=NA. F: tape measure protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 26, Function= tape measure protein, EValue= 0.0. NCBIBLAST= PhageName= tape measure protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:835, QueryRange= 1:835, EValue= 0.0. HHPRED= Accession= 9D93_Nb, Description= Tapemeasure protein; Bacteriophage, tail tip, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 100.0. Coverage= 29.7006, SubjectRange= 561:823, QueryRange= 561:834. CDD= . CDS 19201 - 20217 /gene="27" /product="minor tail protein" /function="minor tail protein" /locus tag="Sknot_27" /note=Original Glimmer call @bp 19201 has strength 12.24; Genemark calls start at 19201 /note=SSC: Start = 19201, Stop = 20217. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.955 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 1017 bp is the longest possible ORF. GAP: 20 bp. ST: SS=NA. F: minor tail protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 27, Function= minor tail protein, EValue= 0.0. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage Centaur] >gb|AMB18517.1| minor tail protein [Mycobacterium phage NaSiaTalie] >gb|AYD86302.1| minor tail protein [Mycobacterium phage Flare16] >gb|AZF93413.1| minor tail protein [Mycobacterium phage Centaur] >gb|QXN74056.1| minor tail protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:338, QueryRange= 1:338, EValue= 0.0. HHPRED= Accession= 9D93_Mf, Description= Minor tail protein; Bacteriophage, tail tip, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.9. Coverage= 80.7692, SubjectRange= 7:280, QueryRange= 7:275. CDD= . CDS 20214 - 21986 /gene="28" /product="minor tail protein" /function="minor tail protein" /locus tag="Sknot_28" /note=Original Glimmer call @bp 20214 has strength 11.37; Genemark calls start at 20190 /note=SSC: Start = 20214, Stop = 21986. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.126 is not the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 1773 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: minor tail protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 28, Function= minor tail protein, EValue= 0.0. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage NaSiaTalie], Coverage= 100.0, SubjectRange= 1:590, QueryRange= 1:590, EValue= 0.0. HHPRED= Accession= 3D37_B, Description= Tail protein, 43 kDa; tail protein, structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics, UNKNOWN FUNCTION; 2.1A {Neisseria meningitidis MC58} SCOP: b.106.1.1, Probability= 98.7. Coverage= 91.1864, SubjectRange= 1:337, QueryRange= 1:563. CDD= . CDS 22003 - 22449 /gene="29" /product="minor tail protein" /function="minor tail protein" /locus tag="Sknot_29" /note=Original Glimmer call @bp 22003 has strength 6.07; Genemark calls start at 22003 /note=SSC: Start = 22003, Stop = 22449. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.161 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 447 bp is not the longest possible ORF. GAP: 16 bp. ST: SS=NA. F: minor tail protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 29, Function= minor tail protein, EValue= 3.0E-87. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage Drake55] >gb|AYD86304.1| minor tail protein [Mycobacterium phage Flare16] >gb|QXN74058.1| minor tail protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:148, QueryRange= 1:148, EValue= 1.13647E-105. HHPRED= . CDD= . CDS 22446 - 22775 /gene="30" /product="minor tail protein" /function="minor tail protein" /locus tag="Sknot_30" /note=Original Glimmer call @bp 22446 has strength 10.12; Genemark calls start at 22446 /note=SSC: Start = 22446, Stop = 22775. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.877 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 330 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: minor tail protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 30, Function= minor tail protein, EValue= 1.0E-56. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage Equemioh13] >gb|ATN92278.1| minor tail protein [Mycobacterium phage Updawg] >gb|AYD86305.1| minor tail protein [Mycobacterium phage Flare16] >gb|QDM57233.1| hypothetical protein SEA_WIDEWALE_32 [Mycobacterium phage WideWale] >gb|QXN74059.1| minor tail protein [Mycobacterium Phage MiculUcigas] >gb|AIT13348.1| hypothetical protein PBI_EQUEMIOH13_32 [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:109, QueryRange= 1:109, EValue= 1.43467E-72. HHPRED= Accession= PF10874.13, Description= DUF2746 ; Protein of unknown function (DUF2746), Probability= 100.0. Coverage= 92.6606, SubjectRange= 1:100, QueryRange= 1:102. CDD= . CDS 22776 - 24998 /gene="31" /product="minor tail protein" /function="minor tail protein" /locus tag="Sknot_31" /note=Original Glimmer call @bp 22776 has strength 12.16; Genemark calls start at 22776 /note=SSC: Start = 22776, Stop = 24998. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.198 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 2223 bp is the longest possible ORF. GAP: 0 bp. ST: SS=NA. F: minor tail protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 31, Function= minor tail protein, EValue= 0.0. NCBIBLAST= PhageName= minor tail protein [Mycobacterium phage Flare16], Coverage= 100.0, SubjectRange= 1:740, QueryRange= 1:740, EValue= 0.0. HHPRED= Accession= 9D93_Pb, Description= Minor tail protein; Bacteriophage, tail tip, VIRAL PROTEIN;{Mycobacterium phage Bxb1}, Probability= 99.7. Coverage= 17.4324, SubjectRange= 10:130, QueryRange= 10:142. CDD= . CDS 25055 - 25213 /gene="32" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_32" /note=Original Glimmer call @bp 25055 has strength 8.87; Genemark calls start at 25055 /note=SSC: Start = 25055, Stop = 25213. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.316 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 159 bp is the longest possible ORF. GAP: 56 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 32, Function= function unknown, EValue= 3.0E-24. NCBIBLAST= PhageName= hypothetical protein KIY81_gp60 [Mycobacterium phage Bugsy] >gb|AMB18522.1| hypothetical protein NASIATALIE_32 [Mycobacterium phage NaSiaTalie] >gb|AYD86307.1| hypothetical protein SEA_FLARE16_32 [Mycobacterium phage Flare16] >gb|QGJ90556.1| hypothetical protein SEA_BUGSY_34 [Mycobacterium phage Bugsy] >gb|QXN74061.1| hypothetical protein SEA_MICULUCIGAS_32 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:52, QueryRange= 1:52, EValue= 2.55797E-26. HHPRED= . CDD= . CDS complement (25210 - 25380) /gene="33" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_33" /note=Original Glimmer call @bp 25380 has strength 6.61; Genemark calls start at 25380 /note=SSC: Start = 25380, Stop = 25210. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.859 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 171 bp is not the longest possible ORF. GAP: 1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 33, Function= function unknown, EValue= 5.0E-26. NCBIBLAST= PhageName= hypothetical protein KIY81_gp59 [Mycobacterium phage Bugsy] >gb|AMB18523.1| hypothetical protein NASIATALIE_33 [Mycobacterium phage NaSiaTalie] >gb|AYD86308.1| hypothetical protein SEA_FLARE16_33 [Mycobacterium phage Flare16] >gb|QGJ90557.1| hypothetical protein SEA_BUGSY_35 [Mycobacterium phage Bugsy] >gb|QXN74062.1| hypothetical protein SEA_MICULUCIGAS_33 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:56, QueryRange= 1:56, EValue= 7.87366E-31. HHPRED= . CDD= . CDS complement (25382 - 26566) /gene="34" /product="tyrosine integrase" /function="tyrosine integrase" /locus tag="Sknot_34" /note=Original Glimmer call @bp 26449 has strength 13.33; Genemark calls start at 26449 /note=SSC: Start = 26566, Stop = 25382. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.955 is not the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 1185 bp is the longest possible ORF. GAP: 326 bp. ST: SS=NA. F: tyrosine integrase. FS: PHDBLAST= PhageName= Bugsy, ProteinNumber= 36, Function= tyrosine integrase, EValue= 0.0. NCBIBLAST= PhageName= tyrosine-type recombinase/integrase [Mycobacterium phage Bugsy] >gb|QGJ90558.1| tyrosine integrase [Mycobacterium phage Bugsy] >gb|QXN74063.1| tyrosine integrase [Mycobacterium Phage MiculUcigas], Coverage= 94.6701, SubjectRange= 1:373, QueryRange= 1:394, EValue= 0.0. HHPRED= Accession= 1Z1B_A, Description= Integrase; PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX; HET: PTR; 3.8A {Enterobacteria phage lambda} SCOP: d.163.1.1, d.10.1.4, Probability= 100.0. Coverage= 89.3401, SubjectRange= 10:348, QueryRange= 10:378. CDD= Accession= COG0582, Coverage= 86.802, SubjectRange= 22:359, QueryRange= 22:368, EValue= 4.46979E-25. CDS 26893 - 27330 /gene="35" /product="membrane protein" /function="membrane protein" /locus tag="Sknot_35" /note=Original Glimmer call @bp 26782 has strength 7.25; Genemark calls start at 26893 /note=SSC: Start = 26893, Stop = 27330. (Forward). CP: Does not contain all GeneMarkHost capacity. SD: ZScore 1.949 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 438 bp is not the longest possible ORF. GAP: 326 bp. ST: SS=NA. F: membrane protein. FS: PHDBLAST= . NCBIBLAST= PhageName= excisionase [Mycobacterium phage Bugsy] >gb|AMB18525.1| hypothetical protein NASIATALIE_35 [Mycobacterium phage NaSiaTalie] >gb|AYD86310.1| hypothetical protein SEA_FLARE16_35 [Mycobacterium phage Flare16] >gb|QGJ90559.1| hypothetical protein SEA_BUGSY_37 [Mycobacterium phage Bugsy] >gb|QXN74064.1| membrane protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:145, QueryRange= 1:145, EValue= 3.61039E-96. HHPRED= . CDD= . CDS 27377 - 27772 /gene="36" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_36" /note=Original Glimmer call @bp 27377 has strength 6.0; Genemark calls start at 27377 /note=SSC: Start = 27377, Stop = 27772. (Forward). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.604 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 396 bp is the longest possible ORF. GAP: 46 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 36, Function= function unknown, EValue= 1.0E-75. NCBIBLAST= PhageName= hypothetical protein KIY81_gp56 [Mycobacterium phage Bugsy] >gb|AYD86311.1| hypothetical protein SEA_FLARE16_36 [Mycobacterium phage Flare16] >gb|QGJ90560.1| hypothetical protein SEA_BUGSY_38 [Mycobacterium phage Bugsy], Coverage= 100.0, SubjectRange= 1:131, QueryRange= 1:131, EValue= 3.46545E-91. HHPRED= . CDD= . CDS complement (27850 - 27984) /gene="37" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_37" /note=Original Glimmer call @bp 27984 has strength 15.9; Genemark calls start at 27984 /note=SSC: Start = 27984, Stop = 27850. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.086 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 135 bp is the longest possible ORF. GAP: 3 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 37, Function= function unknown, EValue= 2.0E-18. NCBIBLAST= PhageName= hypothetical protein KIY81_gp55 [Mycobacterium phage Bugsy] >gb|AMB18527.1| hypothetical protein NASIATALIE_37 [Mycobacterium phage NaSiaTalie] >gb|AYD86312.1| hypothetical protein SEA_FLARE16_37 [Mycobacterium phage Flare16] >gb|QGJ90561.1| hypothetical protein SEA_BUGSY_39 [Mycobacterium phage Bugsy] >gb|QXN74066.1| hypothetical protein SEA_MICULUCIGAS_37 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:44, QueryRange= 1:44, EValue= 4.19135E-22. HHPRED= . CDD= . CDS complement (27988 - 28158) /gene="38" /product="excise" /function="excise" /locus tag="Sknot_38" /note=Original Glimmer call @bp 28158 has strength 10.35; Genemark calls start at 28158 /note=SSC: Start = 28158, Stop = 27988. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 171 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: excise. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 38, Function= excise, EValue= 4.0E-25. NCBIBLAST= PhageName= excisionase family DNA-binding protein [Mycobacterium phage Bugsy] >gb|AMB18528.1| hypothetical protein NASIATALIE_38 [Mycobacterium phage NaSiaTalie] >gb|AYD86313.1| excise [Mycobacterium phage Flare16] >gb|QFP95521.1| excise [Mycobacterium phage GaugeLDP] >gb|QXN74067.1| excise [Mycobacterium Phage MiculUcigas] >gb|QGJ90562.1| hypothetical protein SEA_BUGSY_40 [Mycobacterium phage Bugsy], Coverage= 100.0, SubjectRange= 1:56, QueryRange= 1:56, EValue= 1.48204E-31. HHPRED= Accession= 8DGL_C, Description= Recombination Directionality Factor RdfS; Excisionase, Recombination Directionality Factor, winged helix-turn-helix, superhelix, DNA BINDING PROTEIN; HET: GOL; 2.45A {Mesorhizobium japonicum R7A}, Probability= 98.6. Coverage= 91.0714, SubjectRange= 18:69, QueryRange= 18:54. CDD= Accession= TIGR01764, Coverage= 85.7143, SubjectRange= 3:49, QueryRange= 3:53, EValue= 7.90373E-8. CDS complement (28158 - 28550) /gene="39" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_39" /note=Original Glimmer call @bp 28550 has strength 12.86; Genemark calls start at 28550 /note=SSC: Start = 28550, Stop = 28158. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.12 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 393 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 39, Function= function unknown, EValue= 1.0E-70. NCBIBLAST= PhageName= hypothetical protein KIY81_gp53 [Mycobacterium phage Bugsy] >gb|AMB18529.1| hypothetical protein NASIATALIE_39 [Mycobacterium phage NaSiaTalie] >gb|AYD86314.1| hypothetical protein SEA_FLARE16_39 [Mycobacterium phage Flare16] >gb|QGJ90563.1| hypothetical protein SEA_BUGSY_41 [Mycobacterium phage Bugsy] >gb|QXN74068.1| hypothetical protein SEA_MICULUCIGAS_39 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:130, QueryRange= 1:130, EValue= 2.90389E-88. HHPRED= Accession= 4ZXQ_B, Description= Tail needle protein gp26; Viral protein, P22, Tail Needle, Membrane penetration; 2.75A {Enterobacteria phage P22}, Probability= 93.2. Coverage= 45.3846, SubjectRange= 74:133, QueryRange= 74:128. CDD= Accession= NF040697, Coverage= 29.2308, SubjectRange= 89:128, QueryRange= 89:126, EValue= 0.00828941. CDS complement (28547 - 28813) /gene="40" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_40" /note=Original Glimmer call @bp 28813 has strength 11.56; Genemark calls start at 28813 /note=SSC: Start = 28813, Stop = 28547. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 267 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 40, Function= function unknown, EValue= 7.0E-48. NCBIBLAST= PhageName= hypothetical protein KIY81_gp52 [Mycobacterium phage Bugsy] >gb|AMB18530.1| hypothetical protein NASIATALIE_40 [Mycobacterium phage NaSiaTalie] >gb|QGJ90564.1| hypothetical protein SEA_BUGSY_42 [Mycobacterium phage Bugsy], Coverage= 100.0, SubjectRange= 1:88, QueryRange= 1:88, EValue= 7.27625E-59. HHPRED= . CDD= . CDS complement (28810 - 29094) /gene="41" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_41" /note=Original Glimmer call @bp 29094 has strength 12.51; Genemark calls start at 29094 /note=SSC: Start = 29094, Stop = 28810. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.778 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 285 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 41, Function= function unknown, EValue= 8.0E-49. NCBIBLAST= PhageName= hypothetical protein KIY81_gp51 [Mycobacterium phage Bugsy] >ref|YP_010063657.1| hypothetical protein KIY82_gp65 [Mycobacterium phage Centaur] >gb|AMB18531.1| hypothetical protein NASIATALIE_41 [Mycobacterium phage NaSiaTalie] >gb|AYD86316.1| hypothetical protein SEA_FLARE16_41 [Mycobacterium phage Flare16] >gb|AZF93426.1| hypothetical protein SEA_CENTAUR_42 [Mycobacterium phage Centaur] >gb|QGJ90565.1| hypothetical protein SEA_BUGSY_43 [Mycobacterium phage Bugsy], Coverage= 100.0, SubjectRange= 1:94, QueryRange= 1:94, EValue= 1.18959E-61. HHPRED= . CDD= . CDS complement (29094 - 29321) /gene="42" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_42" /note=Original Glimmer call @bp 29321 has strength 11.32; Genemark calls start at 29321 /note=SSC: Start = 29321, Stop = 29094. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.567 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 228 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 42, Function= function unknown, EValue= 1.0E-40. NCBIBLAST= PhageName= hypothetical protein KIY82_gp64 [Mycobacterium phage Centaur] >gb|AMB18532.1| hypothetical protein NASIATALIE_42 [Mycobacterium phage NaSiaTalie] >gb|AYD86317.1| hypothetical protein SEA_FLARE16_42 [Mycobacterium phage Flare16] >gb|AZF93427.1| hypothetical protein SEA_CENTAUR_43 [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:75, QueryRange= 1:75, EValue= 2.21746E-48. HHPRED= . CDD= . CDS complement (29321 - 29542) /gene="43" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_43" /note=Original Glimmer call @bp 29542 has strength 13.41; Genemark calls start at 29524 /note=SSC: Start = 29542, Stop = 29321. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 222 bp is the longest possible ORF. GAP: 30 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 44, Function= function unknown, EValue= 5.0E-36. NCBIBLAST= PhageName= hypothetical protein AVV38_gp60 [Mycobacterium phage Piro94] >ref|YP_010063576.1| hypothetical protein KIY81_gp49 [Mycobacterium phage Bugsy] >ref|YP_010063659.1| hypothetical protein KIY82_gp63 [Mycobacterium phage Centaur] >gb|AMB18533.1| hypothetical protein NASIATALIE_43 [Mycobacterium phage NaSiaTalie] >gb|AOZ63986.1| hypothetical protein SEA_BAEHEXIC_42 [Mycobacterium phage Baehexic] >gb|ASZ72834.1| hypothetical protein SEA_DRAKE55_45 [Mycobacterium phage Drake55] >gb|ATN92239.1| hypothetical protein SEA_UPDAWG_44 [Mycobacterium phage Updawg] >gb|AYD86318.1| hypothetical protein SEA_FLARE16_43 [Mycobacterium phage Flare16] >gb|QDM57245.1| hypothetical protein SEA_WIDEWALE_44 [Mycobacterium phage WideWale] >gb|QXN74072.1| hypothetical protein SEA_MICULUCIGAS_43 [Mycobacterium Phage MiculUcigas] , Coverage= 100.0, SubjectRange= 1:73, QueryRange= 1:73, EValue= 1.13389E-43. HHPRED= . CDD= . CDS complement (29573 - 31360) /gene="44" /product="DNA polymerase I" /function="DNA polymerase I" /locus tag="Sknot_44" /note=Original Glimmer call @bp 31360 has strength 16.08; Genemark calls start at 31360 /note=SSC: Start = 31360, Stop = 29573. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.781 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 1788 bp is the longest possible ORF. GAP: 7 bp. ST: SS=NA. F: DNA polymerase I. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 44, Function= DNA polymerase I, EValue= 0.0. NCBIBLAST= PhageName= DNA polymerase [Mycobacterium phage Centaur] >gb|AYD86319.1| DNA polymerase I [Mycobacterium phage Flare16] >gb|AZF93429.1| DNA polymerase I [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:595, QueryRange= 1:595, EValue= 0.0. HHPRED= Accession= 7SXQ_A, Description= Apicoplast DNA polymerase; DNA polymerase, exonulease, apicoplast, Plasmodium falciparum, REPLICATION, TRANSFERASE; HET: EDO, PEG; 2.5A {Plasmodium falciparum (isolate 3D7)}, Probability= 100.0. Coverage= 97.479, SubjectRange= 52:627, QueryRange= 52:590. CDD= . CDS complement (31368 - 31562) /gene="45" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_45" /note=Original Glimmer call @bp 31562 has strength 16.12; Genemark calls start at 31562 /note=SSC: Start = 31562, Stop = 31368. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.126 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 195 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 45, Function= function unknown, EValue= 2.0E-30. NCBIBLAST= PhageName= hypothetical protein AVT12_gp60 [Mycobacterium phage Equemioh13] >ref|YP_010063661.1| hypothetical protein KIY82_gp61 [Mycobacterium phage Centaur] >gb|AMB18535.1| hypothetical protein NASIATALIE_45 [Mycobacterium phage NaSiaTalie] >gb|ATN92241.1| hypothetical protein SEA_UPDAWG_46 [Mycobacterium phage Updawg] >gb|AYD86320.1| hypothetical protein SEA_FLARE16_45 [Mycobacterium phage Flare16] >gb|QDM57247.1| hypothetical protein SEA_WIDEWALE_46 [Mycobacterium phage WideWale] >gb|QXN74074.1| hypothetical protein SEA_MICULUCIGAS_45 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:64, QueryRange= 1:64, EValue= 9.25164E-39. HHPRED= . CDD= . CDS complement (31562 - 31747) /gene="46" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_46" /note=Original Glimmer call @bp 31747 has strength 13.8; Genemark calls start at 31747 /note=SSC: Start = 31747, Stop = 31562. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.24 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 186 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 47, Function= function unknown, EValue= 5.0E-28. NCBIBLAST= PhageName= hypothetical protein AVV38_gp57 [Mycobacterium phage Piro94] >ref|YP_009203316.1| hypothetical protein AVT12_gp59 [Mycobacterium phage Equemioh13] >ref|YP_010063579.1| hypothetical protein KIY81_gp46 [Mycobacterium phage Bugsy] >ref|YP_010063662.1| hypothetical protein KIY82_gp60 [Mycobacterium phage Centaur] >gb|AMB18536.1| hypothetical protein NASIATALIE_46 [Mycobacterium phage NaSiaTalie] >gb|ATN92242.1| hypothetical protein SEA_UPDAWG_47 [Mycobacterium phage Updawg] >gb|AYD86321.1| hypothetical protein SEA_FLARE16_46 [Mycobacterium phage Flare16] >gb|QDM57248.1| hypothetical protein SEA_WIDEWALE_47 [Mycobacterium phage WideWale] >gb|QXN74075.1| hypothetical protein SEA_MICULUCIGAS_46 [Mycobacterium Phage MiculUcigas] >gb|UJD20975.1| hypothetical protein SEA_HARRYHOUDINI_47 [Mycobacterium phage HarryHoudini], Coverage= 100.0, SubjectRange= 1:61, QueryRange= 1:61, EValue= 9.06647E-34. HHPRED= . CDD= . CDS complement (31747 - 32181) /gene="47" /product="helix-turn-helix DNA binding domain" /function="helix-turn-helix DNA binding domain" /locus tag="Sknot_47" /note=Original Glimmer call @bp 32181 has strength 14.07; Genemark calls start at 32181 /note=SSC: Start = 32181, Stop = 31747. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.137 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 435 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: helix-turn-helix DNA binding domain. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 48, Function= helix-turn-helix DNA-binding domain protein, EValue= 4.0E-77. NCBIBLAST= PhageName= HTH DNA binding protein [Mycobacterium phage Bugsy] >ref|YP_010063663.1| HTH DNA binding protein [Mycobacterium phage Centaur] >gb|AMB18537.1| hypothetical protein NASIATALIE_47 [Mycobacterium phage NaSiaTalie] >gb|AOZ63990.1| HTH DNA binding protein [Mycobacterium phage Baehexic] >gb|AYD86322.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage Flare16] >gb|QXN74076.1| helix-turn-helix DNA-binding domain protein [Mycobacterium Phage MiculUcigas] >gb|AZF93432.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:144, QueryRange= 1:144, EValue= 2.0069E-99. HHPRED= Accession= 3UJ3_X, Description= DNA-invertase; helix-turn-helix, site-specific recombinase, RECOMBINATION; 3.51A {Enterobacteria phage Mu}, Probability= 99.8. Coverage= 97.2222, SubjectRange= 41:182, QueryRange= 41:142. CDD= Accession= cd00569, Coverage= 27.7778, SubjectRange= 3:42, QueryRange= 3:139, EValue= 5.62393E-4. CDS complement (32178 - 32390) /gene="48" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_48" /note=Original Glimmer call @bp 32390 has strength 11.01; Genemark calls start at 32390 /note=SSC: Start = 32390, Stop = 32178. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.725 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 213 bp is not the longest possible ORF. GAP: 1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 49, Function= function unknown, EValue= 1.0E-35. NCBIBLAST= PhageName= hypothetical protein AVT12_gp57 [Mycobacterium phage Equemioh13] >ref|YP_010063581.1| hypothetical protein KIY81_gp44 [Mycobacterium phage Bugsy] >ref|YP_010063664.1| hypothetical protein KIY82_gp58 [Mycobacterium phage Centaur] >gb|AOZ63991.1| hypothetical protein SEA_BAEHEXIC_47 [Mycobacterium phage Baehexic] >gb|ATN92232.1| hypothetical protein SEA_UPDAWG_49 [Mycobacterium phage Updawg] >gb|AYD86323.1| hypothetical protein SEA_FLARE16_48 [Mycobacterium phage Flare16] >gb|QDM57250.1| hypothetical protein SEA_WIDEWALE_49 [Mycobacterium phage WideWale] >gb|QXN74077.1| hypothetical protein SEA_MICULUCIGAS_48 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:70, QueryRange= 1:70, EValue= 1.59586E-42. HHPRED= Accession= SCOP_d2rd1a1, Description= b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]} | CLASS: All beta proteins, FOLD: Sm-like fold, SUPFAM: Sm-like ribonucleoproteins, FAM: YgdI/YgdR-like, Probability= 95.5. Coverage= 67.1429, SubjectRange= 4:52, QueryRange= 4:54. CDD= . /note=possible lipoprotein based on HHPRED CDS complement (32392 - 33120) /gene="49" /product="ThyX-like thymidylate synthase" /function="ThyX-like thymidylate synthase" /locus tag="Sknot_49" /note=Original Glimmer call @bp 33120 has strength 13.96; Genemark calls start at 33120 /note=SSC: Start = 33120, Stop = 32392. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.561 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 729 bp is the longest possible ORF. GAP: 73 bp. ST: SS=NA. F: ThyX-like thymidylate synthase. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 50, Function= ThyX-like thymidylate synthase, EValue= 1.0E-139. NCBIBLAST= PhageName= thymidylate synthase [Mycobacterium phage Equemioh13] >ref|YP_010063582.1| thymidylate synthase [Mycobacterium phage Bugsy] >ref|YP_010063665.1| thymidylate synthase [Mycobacterium phage Centaur] >gb|AOZ63992.1| ThyX-like thymidylate synthase [Mycobacterium phage Baehexic] >gb|ASZ72840.1| ThyX-like thymidylate synthase [Mycobacterium phage Drake55] >gb|ATN92233.1| ThyX-like thymidylate synthase [Mycobacterium phage Updawg] >gb|AYD86324.1| ThyX-like thymidylate synthase [Mycobacterium phage Flare16] >gb|QDM57251.1| ThyX-like thymidylate synthase [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:242, QueryRange= 1:242, EValue= 3.80615E-176. HHPRED= Accession= 3FNN_A, Description= Thymidylate synthase thyX; ThyX, thymidylate synthase, FAD, Flavoprotein, Methyltransferase, Nucleotide biosynthesis, Transferase; HET: FAD; 2.3A {Corynebacterium glutamicum}, Probability= 100.0. Coverage= 97.9339, SubjectRange= 13:239, QueryRange= 13:238. CDD= Accession= COG1351, Coverage= 80.1653, SubjectRange= 11:196, QueryRange= 11:232, EValue= 0.0. CDS complement (33194 - 33718) /gene="50" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_50" /note=Original Glimmer call @bp 33703 has strength 13.54; Genemark calls start at 33718 /note=SSC: Start = 33718, Stop = 33194. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.709 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 525 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 50, Function= function unknown, EValue= 4.0E-98. NCBIBLAST= PhageName= ribonucleoside reductase class II [Mycobacterium phage Centaur] >gb|AMB18540.1| hypothetical protein NASIATALIE_50 [Mycobacterium phage NaSiaTalie] >gb|AOZ63993.1| DNA binding protein [Mycobacterium phage Baehexic] >gb|AYD86325.1| hypothetical protein SEA_FLARE16_50 [Mycobacterium phage Flare16] >gb|QDM57252.1| hypothetical protein SEA_WIDEWALE_51 [Mycobacterium phage WideWale] >gb|AZF93435.1| hypothetical protein SEA_CENTAUR_51 [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:174, QueryRange= 1:174, EValue= 4.79311E-124. HHPRED= . CDD= . CDS complement (33715 - 35751) /gene="51" /product="ribonucleotide reductase" /function="ribonucleotide reductase" /locus tag="Sknot_51" /note=Original Glimmer call @bp 35712 has strength 14.34; Genemark calls start at 35712 /note=SSC: Start = 35751, Stop = 33715. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.024 is the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 2037 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: ribonucleotide reductase. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 51, Function= ribonucleotide reductase, EValue= 0.0. NCBIBLAST= PhageName= ribonucleotide reductase [Mycobacterium phage Centaur] >gb|AMB18541.1| ribonucleotide reductase [Mycobacterium phage NaSiaTalie] >gb|AYD86326.1| ribonucleotide reductase [Mycobacterium phage Flare16] >gb|AZF93436.1| ribonucleotide reductase [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:678, QueryRange= 1:678, EValue= 0.0. HHPRED= Accession= 1L1L_B, Description= RIBONUCLEOSIDE TRIPHOSPHATE REDUCTASE; 10-stranded alpha-beta barrel, central finger loop, OXIDOREDUCTASE; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4, Probability= 100.0. Coverage= 99.41, SubjectRange= 20:739, QueryRange= 20:678. CDD= . CDS complement (35751 - 35954) /gene="52" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_52" /note=Original Glimmer call @bp 35954 has strength 11.85; Genemark calls start at 35954 /note=SSC: Start = 35954, Stop = 35751. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.561 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 204 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Drake55, ProteinNumber= 54, Function= function unknown, EValue= 9.0E-34. NCBIBLAST= PhageName= hypothetical protein AVV38_gp51 [Mycobacterium phage Piro94] >ref|YP_009203322.1| hypothetical protein AVT12_gp53 [Mycobacterium phage Equemioh13] >ref|YP_010063668.1| hypothetical protein KIY82_gp54 [Mycobacterium phage Centaur] >gb|AMB18542.1| hypothetical protein NASIATALIE_52 [Mycobacterium phage NaSiaTalie] >gb|AOZ63995.1| hypothetical protein SEA_BAEHEXIC_51 [Mycobacterium phage Baehexic] >gb|ASZ72843.1| hypothetical protein SEA_DRAKE55_54 [Mycobacterium phage Drake55] >gb|ATN92290.1| hypothetical protein SEA_UPDAWG_53 [Mycobacterium phage Updawg] >gb|AYD86327.1| hypothetical protein SEA_FLARE16_52 [Mycobacterium phage Flare16] >gb|QDM57254.1| hypothetical protein SEA_WIDEWALE_53 [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:67, QueryRange= 1:67, EValue= 1.91542E-40. HHPRED= . CDD= . CDS complement (35951 - 36133) /gene="53" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_53" /note=Original Glimmer call @bp 36133 has strength 10.71; Genemark calls start at 36133 /note=SSC: Start = 36133, Stop = 35951. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.448 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 183 bp is the longest possible ORF. GAP: -17 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 53, Function= function unknown, EValue= 2.0E-31. NCBIBLAST= PhageName= hypothetical protein AVT12_gp52 [Mycobacterium phage Equemioh13] >gb|AMB18543.1| hypothetical protein NASIATALIE_53 [Mycobacterium phage NaSiaTalie] >gb|AOZ63996.1| hypothetical protein SEA_BAEHEXIC_52 [Mycobacterium phage Baehexic] >gb|ATN92291.1| hypothetical protein SEA_UPDAWG_54 [Mycobacterium phage Updawg] >gb|AYD86328.1| hypothetical protein SEA_FLARE16_53 [Mycobacterium phage Flare16] >gb|QDM57255.1| hypothetical protein SEA_WIDEWALE_54 [Mycobacterium phage WideWale] >gb|QXN74082.1| hypothetical protein SEA_MICULUCIGAS_53 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:60, QueryRange= 1:60, EValue= 8.47883E-36. HHPRED= Accession= PF17468.7, Description= GP52 ; Phage gene product 52, Probability= 100.0. Coverage= 98.3333, SubjectRange= 1:60, QueryRange= 1:60. CDD= Accession= pfam17468, Coverage= 100.0, SubjectRange= 1:61, QueryRange= 1:60, EValue= 9.133E-35. CDS complement (36117 - 36812) /gene="54" /product="DNA binding protein" /function="DNA binding protein" /locus tag="Sknot_54" /note=Original Glimmer call @bp 36812 has strength 12.34; Genemark calls start at 36812 /note=SSC: Start = 36812, Stop = 36117. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.572 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 696 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: DNA binding protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 55, Function= function unknown, EValue= 1.0E-129. NCBIBLAST= PhageName= sigma-K factor [Mycobacterium phage Equemioh13] >ref|YP_010063670.1| sigma-K factor [Mycobacterium phage Centaur] >gb|AOZ63997.1| DNA binding protein [Mycobacterium phage Baehexic] >gb|ATN92292.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage Updawg] >gb|QDM57256.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage WideWale] >gb|QXN74083.1| RNA polymerase sigma factor [Mycobacterium Phage MiculUcigas] >gb|AIT13371.1| hypothetical protein PBI_EQUEMIOH13_55 [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:231, QueryRange= 1:231, EValue= 2.66856E-168. HHPRED= Accession= 7QH5_B, Description= RNA polymerase sigma factor; sigma factor, Streptomyces, transcription, ECF56; HET: GOL; 2.2A {Streptomyces tsukubensis NRRL18488}, Probability= 98.9. Coverage= 64.5022, SubjectRange= 58:232, QueryRange= 58:154. CDD= . CDS complement (36809 - 36961) /gene="55" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_55" /note=Original Glimmer call @bp 36961 has strength 9.77; Genemark calls start at 36961 /note=SSC: Start = 36961, Stop = 36809. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.778 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 153 bp is the longest possible ORF. GAP: 2 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 56, Function= function unknown, EValue= 1.0E-21. NCBIBLAST= PhageName= hypothetical protein AVT12_gp50 [Mycobacterium phage Equemioh13] >ref|YP_010063671.1| hypothetical protein KIY82_gp51 [Mycobacterium phage Centaur] >gb|AMB18545.1| hypothetical protein NASIATALIE_55 [Mycobacterium phage NaSiaTalie] >gb|AOZ63998.1| hypothetical protein SEA_BAEHEXIC_54 [Mycobacterium phage Baehexic] >gb|ATN92293.1| hypothetical protein SEA_UPDAWG_56 [Mycobacterium phage Updawg] >gb|AYD86330.1| hypothetical protein SEA_FLARE16_55 [Mycobacterium phage Flare16] >gb|QDM57257.1| hypothetical protein SEA_WIDEWALE_56 [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:50, QueryRange= 1:50, EValue= 2.18998E-26. HHPRED= . CDD= . CDS complement (36964 - 37734) /gene="56" /product="metallophosphatase" /function="metallophosphatase" /locus tag="Sknot_56" /note=Original Glimmer call @bp 37734 has strength 12.7; Genemark calls start at 37734 /note=SSC: Start = 37734, Stop = 36964. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.955 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 771 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: metallophosphatase. FS: PHDBLAST= PhageName= Drake55, ProteinNumber= 58, Function= metallophosphoesterase, EValue= 1.0E-151. NCBIBLAST= PhageName= metallo-phosphoesterase [Mycobacterium phage Piro94] >ref|YP_009203326.1| metallo-phosphoesterase [Mycobacterium phage Equemioh13] >ref|YP_010063672.1| metallo-phosphoesterase [Mycobacterium phage Centaur] >gb|AMB18546.1| metallophosphoesterase [Mycobacterium phage NaSiaTalie] >gb|AOZ63999.1| metallophosphoesterase [Mycobacterium phage Baehexic] >gb|ASZ72847.1| metallophosphoesterase [Mycobacterium phage Drake55] >gb|ATN92294.1| metallophosphoesterase [Mycobacterium phage Updawg] >gb|AYD86331.1| metallophosphoesterase [Mycobacterium phage Flare16] >gb|QDM57258.1| metallophosphoesterase [Mycobacterium phage WideWale] >gb|QXN74085.1| metallophosphoesterase [Mycobacterium Phage MiculUcigas] , Coverage= 100.0, SubjectRange= 1:256, QueryRange= 1:256, EValue= 0.0. HHPRED= Accession= SCOP_d1s3la_, Description= d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} | CLASS: Alpha and beta proteins (a+b), FOLD: Metallo-dependent phosphatases, SUPFAM: Metallo-dependent phosphatases, FAM: YfcE-like, Probability= 99.8. Coverage= 92.1875, SubjectRange= 1:164, QueryRange= 1:239. CDD= Accession= pfam00149, Coverage= 39.8438, SubjectRange= 2:82, QueryRange= 2:105, EValue= 0.00222079. CDS complement (37731 - 38048) /gene="57" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_57" /note=Original Glimmer call @bp 38048 has strength 14.17; Genemark calls start at 38048 /note=SSC: Start = 38048, Stop = 37731. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.399 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 318 bp is the longest possible ORF. GAP: 73 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 57, Function= function unknown, EValue= 3.0E-55. NCBIBLAST= PhageName= hypothetical protein NASIATALIE_57 [Mycobacterium phage NaSiaTalie] >gb|AYD86332.1| hypothetical protein SEA_FLARE16_57 [Mycobacterium phage Flare16] >gb|QXN74086.1| hypothetical protein SEA_MICULUCIGAS_57 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:105, QueryRange= 1:105, EValue= 1.4891E-71. HHPRED= . CDD= . CDS complement (38122 - 38754) /gene="58" /product="DNA primase" /function="DNA primase" /locus tag="Sknot_58" /note=Original Glimmer call @bp 38754 has strength 8.68; Genemark calls start at 38472 /note=SSC: Start = 38754, Stop = 38122. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.11 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 633 bp is the longest possible ORF. GAP: 209 bp. ST: SS=NA. F: DNA primase. FS: PHDBLAST= PhageName= Drake55, ProteinNumber= 61, Function= DNA primase, EValue= 1.0E-123. NCBIBLAST= PhageName= DNA primase [Mycobacterium phage Piro94] >ref|YP_009203329.1| DNA primase [Mycobacterium phage Equemioh13] >ref|YP_010063675.1| DNA primase [Mycobacterium phage Centaur] >gb|AMB18549.1| DNA primase [Mycobacterium phage NaSiaTalie] >gb|AOZ64002.1| DNA primase [Mycobacterium phage Baehexic] >gb|ASZ72850.1| DNA primase [Mycobacterium phage Drake55] >gb|ATN92313.1| DNA primase [Mycobacterium phage Updawg] >gb|AYD86334.1| DNA primase [Mycobacterium phage Flare16] >gb|QDM57261.1| DNA primase [Mycobacterium phage WideWale] >gb|QXN74088.1| DNA primase [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:210, QueryRange= 1:210, EValue= 6.97597E-154. HHPRED= Accession= 5VAZ_B, Description= DNA primase; structural genomics, DNA-binding, primase, truncation, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TRANSFERASE; HET: SO4; 2.4A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)} SCOP: e.13.1.0, Probability= 99.8. Coverage= 96.6667, SubjectRange= 17:266, QueryRange= 17:208. CDD= Accession= COG0358, Coverage= 93.8095, SubjectRange= 119:357, QueryRange= 119:210, EValue= 5.56661E-10. CDS complement (38964 - 39095) /gene="59" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_59" /note=Original Glimmer call @bp 39095 has strength 18.18; Genemark calls start at 39095 /note=SSC: Start = 39095, Stop = 38964. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.167 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 132 bp is not the longest possible ORF. GAP: 25 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 61, Function= function unknown, EValue= 3.0E-18. NCBIBLAST= PhageName= hypothetical protein AVT12_gp45 [Mycobacterium phage Equemioh13] >ref|YP_010063677.1| hypothetical protein KIY82_gp45 [Mycobacterium phage Centaur] >gb|AMB18551.1| hypothetical protein NASIATALIE_61 [Mycobacterium phage NaSiaTalie] >gb|AOZ64004.1| hypothetical protein SEA_BAEHEXIC_60 [Mycobacterium phage Baehexic] >gb|ATN92314.1| hypothetical protein SEA_UPDAWG_62 [Mycobacterium phage Updawg] >gb|AYD86336.1| hypothetical protein SEA_FLARE16_61 [Mycobacterium phage Flare16] >gb|QDM57263.1| hypothetical protein SEA_WIDEWALE_62 [Mycobacterium phage WideWale] >gb|QXN74090.1| hypothetical protein SEA_MICULUCIGAS_61 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:43, QueryRange= 1:43, EValue= 2.18279E-21. HHPRED= . CDD= . CDS complement (39121 - 39594) /gene="60" /product="endonuclease VII" /function="endonuclease VII" /locus tag="Sknot_60" /note=Original Glimmer call @bp 39600 has strength 7.99; Genemark calls start at 39465 /note=SSC: Start = 39594, Stop = 39121. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.11 is the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 474 bp is not the longest possible ORF. GAP: -35 bp. ST: SS=NA. F: endonuclease VII. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 62, Function= EndoVII protein, EValue= 3.0E-93. NCBIBLAST= PhageName= endonuclease VII [Mycobacterium phage Piro94] >ref|YP_009203331.1| endonuclease VII [Mycobacterium phage Equemioh13] >ref|YP_010063678.1| endonuclease VII [Mycobacterium phage Centaur] >gb|AOZ64005.1| endonuclease VII [Mycobacterium phage Baehexic] >gb|ATN92295.1| endonuclease VII [Mycobacterium phage Updawg] >gb|QDM57264.1| endonuclease VII [Mycobacterium phage WideWale] >gb|AIK67778.1| endonuclease VII [Mycobacterium phage Piro94] >gb|AIT13378.1| EndoVII protein [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:157, QueryRange= 1:157, EValue= 1.06059E-112. HHPRED= Accession= 3GOX_B, Description= Restriction endonuclease Hpy99I; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY99I, PSEUDOPALINDROME, HYDROLASE-DNA COMPLEX; HET: 1PE; 1.5A {Helicobacter pylori}, Probability= 99.8. Coverage= 82.1656, SubjectRange= 69:198, QueryRange= 69:137. CDD= . CDS complement (39560 - 39676) /gene="61" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_61" /note=Original Glimmer call @bp 39676 has strength 8.34; Genemark calls start at 39676 /note=SSC: Start = 39676, Stop = 39560. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.402 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 117 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= HarryHoudini, ProteinNumber= 64, Function= function unknown, EValue= 1.0E-14. NCBIBLAST= PhageName= hypothetical protein AVV38_gp40 [Mycobacterium phage Piro94] >ref|YP_009203332.1| hypothetical protein AVT12_gp43 [Mycobacterium phage Equemioh13] >gb|AOZ64006.1| hypothetical protein SEA_BAEHEXIC_62 [Mycobacterium phage Baehexic] >gb|ATN92296.1| hypothetical protein SEA_UPDAWG_64 [Mycobacterium phage Updawg] >gb|QDM57265.1| hypothetical protein SEA_WIDEWALE_64 [Mycobacterium phage WideWale] >gb|UJD20992.1| hypothetical protein SEA_HARRYHOUDINI_64 [Mycobacterium phage HarryHoudini] >gb|AIK67779.1| hypothetical protein PBI_PIRO94_63 [Mycobacterium phage Piro94], Coverage= 100.0, SubjectRange= 1:38, QueryRange= 1:38, EValue= 4.77369E-17. HHPRED= . CDD= . CDS complement (39673 - 40509) /gene="62" /product="hydrolase" /function="hydrolase" /locus tag="Sknot_62" /note=Original Glimmer call @bp 40518 has strength 14.64; Genemark calls start at 40509 /note=SSC: Start = 40509, Stop = 39673. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.159 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 837 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: hydrolase. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 64, Function= esterase/lipase, EValue= 1.0E-157. NCBIBLAST= PhageName= esterase/lipase [Mycobacterium phage Centaur] >gb|AMB18554.1| esterase/lipase [Mycobacterium phage NaSiaTalie] >gb|AYD86339.1| esterase [Mycobacterium phage Flare16] >gb|AZF93449.1| hydrolase [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:278, QueryRange= 1:278, EValue= 0.0. HHPRED= Accession= 5W15_B, Description= Alpha/beta hydrolase fold protein; SSGCID, Burkholderia ambifaria, alpha/beta hydrolase, fold protein, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease; 1.75A {Burkholderia ambifaria (strain MC40-6)} SCOP: l.1.1.1, c.69.1.0, Probability= 100.0. Coverage= 93.8849, SubjectRange= 11:274, QueryRange= 11:263. CDD= Accession= COG0596, Coverage= 91.7266, SubjectRange= 1:208, QueryRange= 1:255, EValue= 2.82449E-29. CDS complement (40506 - 40736) /gene="63" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_63" /note=Original Glimmer call @bp 40736 has strength 10.94; Genemark calls start at 40718 /note=SSC: Start = 40736, Stop = 40506. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.167 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 231 bp is the longest possible ORF. GAP: 137 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Drake55, ProteinNumber= 67, Function= function unknown, EValue= 8.0E-38. NCBIBLAST= PhageName= hypothetical protein AVT12_gp41 [Mycobacterium phage Equemioh13] >ref|YP_010063681.1| hypothetical protein KIY82_gp41 [Mycobacterium phage Centaur] >gb|AMB18555.1| hypothetical protein NASIATALIE_65 [Mycobacterium phage NaSiaTalie] >gb|AOZ64008.1| hypothetical protein SEA_BAEHEXIC_64 [Mycobacterium phage Baehexic] >gb|ASZ72856.1| hypothetical protein SEA_DRAKE55_67 [Mycobacterium phage Drake55] >gb|ATN92298.1| hypothetical protein SEA_UPDAWG_66 [Mycobacterium phage Updawg] >gb|AYD86340.1| hypothetical protein SEA_FLARE16_65 [Mycobacterium phage Flare16] >gb|QDM57267.1| hypothetical protein SEA_WIDEWALE_66 [Mycobacterium phage WideWale] >gb|QXN74094.1| hypothetical protein SEA_MICULUCIGAS_65 [Mycobacterium Phage MiculUcigas] >gb|UJD20994.1| hypothetical protein SEA_HARRYHOUDINI_66 [Mycobacterium phage HarryHoudini], Coverage= 100.0, SubjectRange= 1:76, QueryRange= 1:76, EValue= 1.39688E-47. HHPRED= . CDD= . CDS complement (40874 - 41179) /gene="64" /product="helix-turn-helix DNA binding domain" /function="helix-turn-helix DNA binding domain" /locus tag="Sknot_64" /note=Original Glimmer call @bp 41179 has strength 12.59; Genemark calls start at 41179 /note=SSC: Start = 41179, Stop = 40874. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.28 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 306 bp is the longest possible ORF. GAP: -7 bp. ST: SS=NA. F: helix-turn-helix DNA binding domain. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 66, Function= helix-turn-helix DNA-binding domain protein, EValue= 1.0E-54. NCBIBLAST= PhageName= helix-turn-helix DNA-binding domain protein [Mycobacterium phage Centaur] >gb|AMB18556.1| helix-turn-helix DNA binding protein [Mycobacterium phage NaSiaTalie] >gb|AYD86341.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage Flare16] >gb|AZF93451.1| helix-turn-helix DNA-binding domain protein [Mycobacterium phage Centaur] >gb|QXN74095.1| helix-turn-helix DNA-binding domain protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:101, QueryRange= 1:101, EValue= 8.45457E-68. HHPRED= Accession= SCOP_d2fe3a_, Description= a.4.5.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]} | CLASS: All alpha proteins, FOLD: DNA/RNA-binding 3-helical bundle, SUPFAM: `Winged helix` DNA-binding domain, FAM: automated matches, Probability= 99.3. Coverage= 72.2772, SubjectRange= 4:78, QueryRange= 4:89. CDD= . CDS complement (41173 - 41460) /gene="65" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_65" /note=Original Glimmer call @bp 41460 has strength 7.33; Genemark calls start at 41460 /note=SSC: Start = 41460, Stop = 41173. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.127 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 288 bp is the longest possible ORF. GAP: 33 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= WideWale, ProteinNumber= 68, Function= function unknown, EValue= 5.0E-50. NCBIBLAST= PhageName= hypothetical protein AVT12_gp39 [Mycobacterium phage Equemioh13] >gb|AIT13383.1| hypothetical protein PBI_EQUEMIOH13_67 [Mycobacterium phage Equemioh13] >gb|ATN92300.1| hypothetical protein SEA_UPDAWG_68 [Mycobacterium phage Updawg] >gb|QDM57269.1| hypothetical protein SEA_WIDEWALE_68 [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:95, QueryRange= 1:95, EValue= 7.01472E-58. HHPRED= Accession= 8H1R_F, Description= Uncharacterized lipoprotein YifL; Lipopolysaccharide, Lipoprotein, LptDE, MEMBRANE PROTEIN; HET: PCJ; 2.98A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}, Probability= 96.8. Coverage= 26.3158, SubjectRange= 1:25, QueryRange= 1:26. CDD= . CDS complement (41494 - 42300) /gene="66" /product="DnaB-like dsDNA helicase" /function="DnaB-like dsDNA helicase" /locus tag="Sknot_66" /note=Original Glimmer call @bp 42300 has strength 13.6; Genemark calls start at 42300 /note=SSC: Start = 42300, Stop = 41494. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.11 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 807 bp is the longest possible ORF. GAP: 9 bp. ST: SS=NA. F: DnaB-like dsDNA helicase. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 68, Function= DnaB-like dsDNA helicase, EValue= 1.0E-154. NCBIBLAST= PhageName= DnaB-like replicative helicase [Mycobacterium phage Equemioh13] >ref|YP_010063684.1| DnaB-like replicative helicase [Mycobacterium phage Centaur] >gb|AMB18558.1| DnaB-like dsDNA helicase [Mycobacterium phage NaSiaTalie] >gb|AOZ64011.1| DnaB-like dsDNA helicase [Mycobacterium phage Baehexic] >gb|ATN92301.1| DnaB-like dsDNA helicase [Mycobacterium phage Updawg] >gb|AYD86343.1| DnaB-like dsDNA helicase [Mycobacterium phage Flare16] >gb|QDM57270.1| DnaB-like dsDNA helicase [Mycobacterium phage WideWale] >gb|QXN74097.1| DnaB-like dsDNA helicase [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:268, QueryRange= 1:268, EValue= 0.0. HHPRED= Accession= 3BH0_A, Description= DNAB-LIKE REPLICATIVE HELICASE; Helicase, ATPase, REPLICATION; 2.35A {Bacillus phage SPP1}, Probability= 99.9. Coverage= 97.7612, SubjectRange= 38:309, QueryRange= 38:267. CDD= Accession= cd00984, Coverage= 57.8358, SubjectRange= 17:176, QueryRange= 17:187, EValue= 5.0478E-10. CDS complement (42310 - 42435) /gene="67" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_67" /note=Original Glimmer call @bp 42435 has strength 18.24; Genemark calls start at 42435 /note=SSC: Start = 42435, Stop = 42310. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.482 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 126 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 70, Function= function unknown, EValue= 1.0E-16. NCBIBLAST= PhageName= hypothetical protein AVV38_gp34 [Mycobacterium phage Piro94] >ref|YP_009203338.1| hypothetical protein AVT12_gp37 [Mycobacterium phage Equemioh13] >ref|YP_010063685.1| hypothetical protein KIY82_gp37 [Mycobacterium phage Centaur] >gb|AMB18559.1| hypothetical protein NASIATALIE_69 [Mycobacterium phage NaSiaTalie] >gb|AOZ64012.1| hypothetical protein SEA_BAEHEXIC_68 [Mycobacterium phage Baehexic] >gb|ATN92302.1| hypothetical protein SEA_UPDAWG_70 [Mycobacterium phage Updawg] >gb|AYD86344.1| hypothetical protein SEA_FLARE16_69 [Mycobacterium phage Flare16] >gb|QDM57271.1| hypothetical protein SEA_WIDEWALE_70 [Mycobacterium phage WideWale], Coverage= 100.0, SubjectRange= 1:41, QueryRange= 1:41, EValue= 2.01613E-20. HHPRED= . CDD= . CDS complement (42435 - 42815) /gene="68" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_68" /note=Original Glimmer call @bp 42815 has strength 9.82; Genemark calls start at 42815 /note=SSC: Start = 42815, Stop = 42435. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.742 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 381 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 70, Function= function unknown, EValue= 6.0E-68. NCBIBLAST= PhageName= hypothetical protein SEA_FLARE16_70 [Mycobacterium phage Flare16] >gb|QXN74099.1| hypothetical protein SEA_MICULUCIGAS_70 [Mycobacterium Phage MiculUcigas], Coverage= 98.4127, SubjectRange= 1:124, QueryRange= 1:124, EValue= 1.80372E-80. HHPRED= . CDD= . CDS complement (42812 - 43051) /gene="69" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_69" /note=Original Glimmer call @bp 43051 has strength 12.27; Genemark calls start at 43051 /note=SSC: Start = 43051, Stop = 42812. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.013 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 240 bp is not the longest possible ORF. GAP: 28 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= First, ProteinNumber= 0071, Function= function unknown, EValue= 7.0E-40. NCBIBLAST= . HHPRED= Accession= PF17469.7, Description= GP68 ; Gp68-like predicted RNA polymerase component, Probability= 100.0. Coverage= 97.4684, SubjectRange= 1:78, QueryRange= 1:79. CDD= . CDS complement (43080 - 43274) /gene="70" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_70" /note=Original Glimmer call @bp 43274 has strength 13.98; Genemark calls start at 43274 /note=SSC: Start = 43274, Stop = 43080. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.535 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 195 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 71, Function= function unknown, EValue= 9.0E-32. NCBIBLAST= PhageName= hypothetical protein AVV38_gp32 [Mycobacterium phage Piro94] >ref|YP_009203340.1| hypothetical protein AVT12_gp35 [Mycobacterium phage Equemioh13] >ref|YP_010063687.1| hypothetical protein KIY82_gp35 [Mycobacterium phage Centaur] >gb|AMB18562.1| hypothetical protein NASIATALIE_72 [Mycobacterium phage NaSiaTalie] >gb|AOZ64014.1| hypothetical protein SEA_BAEHEXIC_70 [Mycobacterium phage Baehexic] >gb|ATN92304.1| hypothetical protein SEA_UPDAWG_72 [Mycobacterium phage Updawg] >gb|AYD86347.1| hypothetical protein SEA_FLARE16_72 [Mycobacterium phage Flare16] >gb|QDM57273.1| hypothetical protein SEA_WIDEWALE_72 [Mycobacterium phage WideWale] >gb|QXN74101.1| hypothetical protein SEA_MICULUCIGAS_72 [Mycobacterium Phage MiculUcigas] >gb|QXO13348.1| hypothetical protein SEA_TROOPER_71 [Mycobacterium phage Trooper], Coverage= 100.0, SubjectRange= 1:64, QueryRange= 1:64, EValue= 7.55311E-40. HHPRED= . CDD= . CDS complement (43271 - 43498) /gene="71" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_71" /note=Original Glimmer call @bp 43498 has strength 6.6; Genemark calls start at 43498 /note=SSC: Start = 43498, Stop = 43271. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.161 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 228 bp is the longest possible ORF. GAP: 47 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 73, Function= function unknown, EValue= 7.0E-40. NCBIBLAST= PhageName= hypothetical protein SEA_MICULUCIGAS_73 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:75, QueryRange= 1:75, EValue= 1.7476E-47. HHPRED= . CDD= . CDS complement (43546 - 44361) /gene="72" /product="Cas4 exonuclease" /function="Cas4 exonuclease" /locus tag="Sknot_72" /note=Original Glimmer call @bp 44361 has strength 12.57; Genemark calls start at 44361 /note=SSC: Start = 44361, Stop = 43546. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.025 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 816 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Cas4 exonuclease. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 74, Function= Cas4 exonuclease, EValue= 1.0E-161. NCBIBLAST= PhageName= exonuclease [Mycobacterium phage Equemioh13] >ref|YP_010063689.1| exonuclease [Mycobacterium phage Centaur] >gb|AMB18564.1| Cas4 exonuclease [Mycobacterium phage NaSiaTalie] >gb|ATN92318.1| Cas4 exonuclease [Mycobacterium phage Updawg] >gb|AYD86349.1| Cas4 exonuclease [Mycobacterium phage Flare16] >gb|QDM57275.1| Cas4 exonuclease [Mycobacterium phage WideWale] >gb|QXN74103.1| Cas4 exonuclease [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:271, QueryRange= 1:271, EValue= 0.0. HHPRED= Accession= PF12705.12, Description= PDDEXK_1 ; PD-(D/E)XK nuclease superfamily, Probability= 99.9. Coverage= 42.4354, SubjectRange= 160:309, QueryRange= 160:268. CDD= . CDS complement (44358 - 44819) /gene="73" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_73" /note=Original Glimmer call @bp 44777 has strength 5.79; Genemark calls start at 44777 /note=SSC: Start = 44819, Stop = 44358. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.418 is not the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 462 bp is not the longest possible ORF. GAP: 20 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 75, Function= function unknown, EValue= 4.0E-77. NCBIBLAST= PhageName= hypothetical protein KIY82_gp32 [Mycobacterium phage Centaur] >gb|AZF93459.1| hypothetical protein SEA_CENTAUR_75 [Mycobacterium phage Centaur] >gb|QXN74104.1| hypothetical protein SEA_MICULUCIGAS_75 [Mycobacterium Phage MiculUcigas], Coverage= 90.8497, SubjectRange= 1:139, QueryRange= 1:153, EValue= 3.92968E-98. HHPRED= . CDD= . CDS complement (44840 - 45409) /gene="74" /product="immunity repressor" /function="immunity repressor" /locus tag="Sknot_74" /note=Original Glimmer call @bp 45409 has strength 9.22; Genemark calls start at 45292 /note=SSC: Start = 45409, Stop = 44840. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.611 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 570 bp is not the longest possible ORF. GAP: 217 bp. ST: SS=NA. F: immunity repressor. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 76, Function= immunity repressor, EValue= 1.0E-109. NCBIBLAST= PhageName= transcriptional repressor [Mycobacterium phage Centaur] >gb|AZF93460.1| immunity repressor [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:189, QueryRange= 1:189, EValue= 1.42109E-136. HHPRED= Accession= 7TZ1_A, Description= Immunity repressor; Immunity repressor, helix-turn-helix motif, DNA binding protein, GENE REGULATION, GENE REGULATION-DNA complex; HET: MSE; 2.79A {Mycobacterium phage TipsytheTRex}, Probability= 100.0. Coverage= 98.9418, SubjectRange= 21:199, QueryRange= 21:188. CDD= . CDS complement (45627 - 45785) /gene="75" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_75" /note=Original Glimmer call @bp 45785 has strength 15.87; Genemark calls start at 45785 /note=SSC: Start = 45785, Stop = 45627. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.372 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 159 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 77, Function= function unknown, EValue= 5.0E-24. NCBIBLAST= . HHPRED= . CDD= . CDS complement (45785 - 46042) /gene="76" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_76" /note=Original Glimmer call @bp 46042 has strength 14.32; Genemark calls start at 46042 /note=SSC: Start = 46042, Stop = 45785. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.167 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 258 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 78, Function= function unknown, EValue= 2.0E-42. NCBIBLAST= PhageName= hypothetical protein KIY82_gp29 [Mycobacterium phage Centaur] >gb|AMB18568.1| hypothetical protein NASIATALIE_78 [Mycobacterium phage NaSiaTalie] >gb|AYD86353.1| hypothetical protein SEA_FLARE16_78 [Mycobacterium phage Flare16] >gb|AZF93462.1| hypothetical protein SEA_CENTAUR_78 [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:85, QueryRange= 1:85, EValue= 7.67618E-54. HHPRED= . CDD= . CDS complement (46042 - 46362) /gene="77" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_77" /note=Original Glimmer call @bp 46362 has strength 12.31; Genemark calls start at 46362 /note=SSC: Start = 46362, Stop = 46042. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.03 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 321 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 79, Function= function unknown, EValue= 1.0E-58. NCBIBLAST= PhageName= hypothetical protein AVT12_gp27 [Mycobacterium phage Equemioh13] >ref|YP_010063694.1| hypothetical protein KIY82_gp28 [Mycobacterium phage Centaur] >gb|AOZ64022.1| hypothetical protein SEA_BAEHEXIC_78 [Mycobacterium phage Baehexic] >gb|ATN92308.1| hypothetical protein SEA_UPDAWG_80 [Mycobacterium phage Updawg] >gb|AYD86354.1| hypothetical protein SEA_FLARE16_79 [Mycobacterium phage Flare16] >gb|QDM57281.1| hypothetical protein SEA_WIDEWALE_80 [Mycobacterium phage WideWale] >gb|QXN74108.1| hypothetical protein SEA_MICULUCIGAS_79 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:106, QueryRange= 1:106, EValue= 4.75376E-71. HHPRED= . CDD= . CDS complement (46359 - 46598) /gene="78" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_78" /note=Original Glimmer call @bp 46598 has strength 17.45; Genemark calls start at 46592 /note=SSC: Start = 46598, Stop = 46359. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.105 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 240 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 80, Function= function unknown, EValue= 2.0E-41. NCBIBLAST= PhageName= hypothetical protein AVT12_gp26 [Mycobacterium phage Equemioh13] >ref|YP_010063695.1| hypothetical protein KIY82_gp27 [Mycobacterium phage Centaur] >gb|AOZ64023.1| hypothetical protein SEA_BAEHEXIC_79 [Mycobacterium phage Baehexic] >gb|ATN92309.1| hypothetical protein SEA_UPDAWG_81 [Mycobacterium phage Updawg] >gb|AYD86355.1| hypothetical protein SEA_FLARE16_80 [Mycobacterium phage Flare16] >gb|QDM57282.1| hypothetical protein SEA_WIDEWALE_81 [Mycobacterium phage WideWale] >gb|QXN74109.1| hypothetical protein SEA_MICULUCIGAS_80 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:79, QueryRange= 1:79, EValue= 6.69522E-49. HHPRED= . CDD= . CDS complement (46595 - 46822) /gene="79" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_79" /note=Original Glimmer call @bp 46822 has strength 11.62; Genemark calls start at 46822 /note=SSC: Start = 46822, Stop = 46595. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.525 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 228 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 81, Function= function unknown, EValue= 7.0E-42. NCBIBLAST= PhageName= hypothetical protein PBI_LARENN_79 [Mycobacterium phage Larenn] >gb|AIW02974.1| hypothetical protein PBI_LARENN_79 [Mycobacterium phage Larenn] >gb|AOZ64024.1| hypothetical protein SEA_BAEHEXIC_80 [Mycobacterium phage Baehexic], Coverage= 100.0, SubjectRange= 2:76, QueryRange= 2:75, EValue= 7.58846E-47. HHPRED= . CDD= . CDS complement (46822 - 46953) /gene="80" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_80" /note=Original Glimmer call @bp 46965 has strength 8.36; Genemark calls start at 46953 /note=SSC: Start = 46953, Stop = 46822. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.882 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 132 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= . NCBIBLAST= PhageName= hypothetical protein AVV38_gp22 [Mycobacterium phage Piro94] >ref|YP_009203351.1| hypothetical protein AVT12_gp24 [Mycobacterium phage Equemioh13] >ref|YP_010063697.1| hypothetical protein KIY82_gp25 [Mycobacterium phage Centaur] >gb|AMB18573.1| hypothetical protein NASIATALIE_83 [Mycobacterium phage NaSiaTalie] >gb|AOZ64025.1| hypothetical protein SEA_BAEHEXIC_81 [Mycobacterium phage Baehexic] >gb|ASZ72872.1| hypothetical protein SEA_DRAKE55_83 [Mycobacterium phage Drake55] >gb|ATN92315.1| hypothetical protein SEA_UPDAWG_83 [Mycobacterium phage Updawg] >gb|AYD86357.1| hypothetical protein SEA_FLARE16_82 [Mycobacterium phage Flare16] >gb|QDM57284.1| hypothetical protein SEA_WIDEWALE_83 [Mycobacterium phage WideWale] >gb|QXN74111.1| hypothetical protein SEA_MICULUCIGAS_82 [Mycobacterium Phage MiculUcigas] , Coverage= 100.0, SubjectRange= 1:43, QueryRange= 1:43, EValue= 2.15482E-22. HHPRED= Accession= PF05122.18, Description= SpdB ; Mobile element transfer protein, Probability= 95.7. Coverage= 65.1163, SubjectRange= 16:46, QueryRange= 16:29. CDD= . CDS complement (46953 - 47264) /gene="81" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_81" /note=Original Glimmer call @bp 47264 has strength 3.93; Genemark calls start at 47252 /note=SSC: Start = 47264, Stop = 46953. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.653 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 312 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= HarryHoudini, ProteinNumber= 83, Function= function unknown, EValue= 1.0E-56. NCBIBLAST= PhageName= hypothetical protein SEA_DRAKE55_84 [Mycobacterium phage Drake55], Coverage= 100.0, SubjectRange= 1:103, QueryRange= 1:103, EValue= 1.50833E-69. HHPRED= . CDD= . CDS complement (47261 - 48019) /gene="82" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_82" /note=Original Glimmer call @bp 48019 has strength 11.72; Genemark calls start at 48019 /note=SSC: Start = 48019, Stop = 47261. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.671 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 759 bp is the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 84, Function= function unknown, EValue= 1.0E-141. NCBIBLAST= PhageName= hypothetical protein AVT12_gp22 [Mycobacterium phage Equemioh13] >gb|AMB18575.1| hypothetical protein NASIATALIE_85 [Mycobacterium phage NaSiaTalie] >gb|AOZ64027.1| hypothetical protein SEA_BAEHEXIC_83 [Mycobacterium phage Baehexic] >gb|ATN92271.1| hypothetical protein SEA_UPDAWG_85 [Mycobacterium phage Updawg] >gb|AYD86359.1| hypothetical protein SEA_FLARE16_84 [Mycobacterium phage Flare16] >gb|QDM57286.1| hypothetical protein SEA_WIDEWALE_85 [Mycobacterium phage WideWale] >gb|QXN74113.1| hypothetical protein SEA_MICULUCIGAS_84 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:252, QueryRange= 1:252, EValue= 0.0. HHPRED= Accession= PF10979.13, Description= DUF2786 ; Protein of unknown function (DUF2786), Probability= 99.0. Coverage= 15.0794, SubjectRange= 1:38, QueryRange= 1:45. CDD= Accession= pfam10979, Coverage= 15.873, SubjectRange= 1:40, QueryRange= 1:46, EValue= 8.04714E-10. CDS complement (48019 - 48162) /gene="83" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_83" /note=Original Glimmer call @bp 48153 has strength 4.7; Genemark calls start at 48162 /note=SSC: Start = 48162, Stop = 48019. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.34 is not the highest start score. SCS: Start is not called by Glimmer and is called by Genemark. LO: 144 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 85, Function= function unknown, EValue= 1.0E-21. NCBIBLAST= PhageName= hypothetical protein AVT12_gp21 [Mycobacterium phage Equemioh13] >gb|AIT13401.1| hypothetical protein PBI_EQUEMIOH13_85 [Mycobacterium phage Equemioh13] >gb|AYD86360.1| hypothetical protein SEA_FLARE16_85 [Mycobacterium phage Flare16] >gb|QDM57287.1| hypothetical protein SEA_WIDEWALE_86 [Mycobacterium phage WideWale] >gb|QXN74114.1| hypothetical protein SEA_MICULUCIGAS_85 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:47, QueryRange= 1:47, EValue= 6.05417E-23. HHPRED= . CDD= . CDS complement (48159 - 48365) /gene="84" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_84" /note=Original Glimmer call @bp 48365 has strength 14.48; Genemark calls start at 48365 /note=SSC: Start = 48365, Stop = 48159. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.372 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 207 bp is not the longest possible ORF. GAP: 64 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= MiculUcigas, ProteinNumber= 86, Function= function unknown, EValue= 2.0E-33. NCBIBLAST= PhageName= hypothetical protein AVT12_gp20 [Mycobacterium phage Equemioh13] >ref|YP_010063701.1| hypothetical protein KIY82_gp21 [Mycobacterium phage Centaur] >gb|AMB18577.1| hypothetical protein NASIATALIE_87 [Mycobacterium phage NaSiaTalie] >gb|ATN92273.1| hypothetical protein SEA_UPDAWG_87 [Mycobacterium phage Updawg] >gb|AYD86361.1| hypothetical protein SEA_FLARE16_86 [Mycobacterium phage Flare16] >gb|QDM57288.1| hypothetical protein SEA_WIDEWALE_87 [Mycobacterium phage WideWale] >gb|QXN74115.1| membrane protein [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:68, QueryRange= 1:68, EValue= 2.32366E-42. HHPRED= Accession= PF17463.7, Description= GP79 ; Gene product 79, Probability= 100.0. Coverage= 60.2941, SubjectRange= 10:51, QueryRange= 10:67. CDD= Accession= pfam17463, Coverage= 75.0, SubjectRange= 1:51, QueryRange= 1:67, EValue= 1.05143E-19. CDS complement (48430 - 48726) /gene="85" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_85" /note=Original Glimmer call @bp 48693 has strength 12.04; Genemark calls start at 48693 /note=SSC: Start = 48726, Stop = 48430. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.086 is not the highest start score. SCS: Start is not called by Glimmer and is not called by Genemark. LO: 297 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 87, Function= function unknown, EValue= 2.0E-50. NCBIBLAST= PhageName= hypothetical protein AVT12_gp19 [Mycobacterium phage Equemioh13] >ref|YP_010063702.1| hypothetical protein KIY82_gp20 [Mycobacterium phage Centaur] >gb|AMB18578.1| hypothetical protein NASIATALIE_88 [Mycobacterium phage NaSiaTalie] >gb|AOZ64030.1| hypothetical protein SEA_BAEHEXIC_86 [Mycobacterium phage Baehexic] >gb|AYD86362.1| hypothetical protein SEA_FLARE16_87 [Mycobacterium phage Flare16] >gb|QDM57289.1| hypothetical protein SEA_WIDEWALE_88 [Mycobacterium phage WideWale] >gb|QXN74116.1| hypothetical protein SEA_MICULUCIGAS_87 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:98, QueryRange= 1:98, EValue= 5.44608E-65. HHPRED= . CDD= . CDS complement (48723 - 49076) /gene="86" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_86" /note=Original Glimmer call @bp 49076 has strength 9.5; Genemark calls start at 49076 /note=SSC: Start = 49076, Stop = 48723. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.611 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 354 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 88, Function= function unknown, EValue= 6.0E-63. NCBIBLAST= PhageName= hypothetical protein AVT12_gp18 [Mycobacterium phage Equemioh13] >gb|ASZ72878.1| hypothetical protein SEA_DRAKE55_89 [Mycobacterium phage Drake55] >gb|ATN92261.1| hypothetical protein SEA_UPDAWG_89 [Mycobacterium phage Updawg] >gb|AYD86363.1| hypothetical protein SEA_FLARE16_88 [Mycobacterium phage Flare16] >gb|QDM57290.1| hypothetical protein SEA_WIDEWALE_89 [Mycobacterium phage WideWale] >gb|AIT13404.1| hypothetical protein PBI_EQUEMIOH13_88 [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:117, QueryRange= 1:117, EValue= 2.32865E-79. HHPRED= . CDD= . CDS complement (49073 - 49186) /gene="87" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_87" /note=Original Glimmer call @bp 49186 has strength 12.04; Genemark calls start at 49189 /note=SSC: Start = 49186, Stop = 49073. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.69 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 114 bp is not the longest possible ORF. GAP: -1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 89, Function= function unknown, EValue= 1.0E-16. NCBIBLAST= PhageName= hypothetical protein AVV38_gp15 [Mycobacterium phage Piro94] >ref|YP_010063704.1| hypothetical protein KIY82_gp18 [Mycobacterium phage Centaur] >gb|AMB18580.1| hypothetical protein NASIATALIE_90 [Mycobacterium phage NaSiaTalie] >gb|AOZ64032.1| hypothetical protein SEA_BAEHEXIC_88 [Mycobacterium phage Baehexic] >gb|ATN92262.1| hypothetical protein SEA_UPDAWG_90 [Mycobacterium phage Updawg] >gb|AYD86364.1| hypothetical protein SEA_FLARE16_89 [Mycobacterium phage Flare16] >gb|QDM57291.1| hypothetical protein SEA_WIDEWALE_90 [Mycobacterium phage WideWale] >gb|QXN74118.1| hypothetical protein SEA_MICULUCIGAS_89 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:37, QueryRange= 1:37, EValue= 4.86742E-18. HHPRED= . CDD= . /note=based on guiding principles- called second start CDS complement (49186 - 49536) /gene="88" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_88" /note=Original Glimmer call @bp 49536 has strength 8.93; Genemark calls start at 49536 /note=SSC: Start = 49536, Stop = 49186. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.525 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 351 bp is the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Updawg, ProteinNumber= 91, Function= function unknown, EValue= 4.0E-64. NCBIBLAST= PhageName= hypothetical protein AVT12_gp16 [Mycobacterium phage Equemioh13] >gb|AIT13406.1| hypothetical protein PBI_EQUEMIOH13_90 [Mycobacterium phage Equemioh13] >gb|ATN92263.1| hypothetical protein SEA_UPDAWG_91 [Mycobacterium phage Updawg] >gb|QDM57292.1| hypothetical protein SEA_WIDEWALE_91 [Mycobacterium phage WideWale] >gb|QXN74119.1| hypothetical protein SEA_MICULUCIGAS_90 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:116, QueryRange= 1:116, EValue= 3.59263E-78. HHPRED= . CDD= . CDS complement (49533 - 49700) /gene="89" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_89" /note=Original Glimmer call @bp 49700 has strength 14.45; Genemark calls start at 49700 /note=SSC: Start = 49700, Stop = 49533. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.535 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 168 bp is not the longest possible ORF. GAP: -4 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Sknot_Draft, ProteinNumber= 91, Function= function unknown, EValue= 1.0E-26. NCBIBLAST= PhageName= hypothetical protein AVT12_gp15 [Mycobacterium phage Equemioh13] >gb|AIT13407.1| hypothetical protein PBI_EQUEMIOH13_91 [Mycobacterium phage Equemioh13] >gb|ATN92264.1| hypothetical protein SEA_UPDAWG_92 [Mycobacterium phage Updawg] >gb|QDM57293.1| hypothetical protein SEA_WIDEWALE_92 [Mycobacterium phage WideWale] >gb|QXN74120.1| hypothetical protein SEA_MICULUCIGAS_91 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:55, QueryRange= 1:55, EValue= 5.56295E-32. HHPRED= Accession= PF06755.17, Description= CbtA_toxin ; CbtA_toxin of type IV toxin-antitoxin system, Probability= 97.1. Coverage= 87.2727, SubjectRange= 17:68, QueryRange= 17:49. CDD= . /note=possibly part of a toxin/antitoxin system based on hhpred, but not strong enough evidence to call CDS complement (49697 - 49903) /gene="90" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_90" /note=Original Glimmer call @bp 49903 has strength 15.49; Genemark calls start at 49903 /note=SSC: Start = 49903, Stop = 49697. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 3.12 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 207 bp is not the longest possible ORF. GAP: 8 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 92, Function= function unknown, EValue= 7.0E-34. NCBIBLAST= PhageName= hypothetical protein AVV38_gp13 [Mycobacterium phage Piro94] >ref|YP_009203361.1| hypothetical protein AVT12_gp14 [Mycobacterium phage Equemioh13] >ref|YP_010063707.1| hypothetical protein KIY82_gp15 [Mycobacterium phage Centaur] >gb|AMB18583.1| hypothetical protein NASIATALIE_93 [Mycobacterium phage NaSiaTalie] >gb|AOZ64035.1| hypothetical protein SEA_BAEHEXIC_91 [Mycobacterium phage Baehexic] >gb|ATN92265.1| hypothetical protein SEA_UPDAWG_93 [Mycobacterium phage Updawg] >gb|AYD86367.1| hypothetical protein SEA_FLARE16_92 [Mycobacterium phage Flare16] >gb|QDM57294.1| hypothetical protein SEA_WIDEWALE_93 [Mycobacterium phage WideWale] >gb|QXN74121.1| hypothetical protein SEA_MICULUCIGAS_92 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:68, QueryRange= 1:68, EValue= 1.75393E-41. HHPRED= Accession= PF16857.10, Description= RNA_pol_inhib ; RNA polymerase inhibitor, Probability= 89.9. Coverage= 63.2353, SubjectRange= 3:45, QueryRange= 3:45. CDD= . CDS complement (49912 - 50241) /gene="91" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_91" /note=Original Glimmer call @bp 50241 has strength 11.1; Genemark calls start at 50241 /note=SSC: Start = 50241, Stop = 49912. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.546 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 330 bp is not the longest possible ORF. GAP: 1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= NaSiaTalie, ProteinNumber= 94, Function= function unknown, EValue= 2.0E-61. NCBIBLAST= PhageName= hypothetical protein AVT12_gp13 [Mycobacterium phage Equemioh13] >gb|AMB18584.1| hypothetical protein NASIATALIE_94 [Mycobacterium phage NaSiaTalie] >gb|ATN92266.1| hypothetical protein SEA_UPDAWG_94 [Mycobacterium phage Updawg] >gb|QDM57295.1| hypothetical protein SEA_WIDEWALE_94 [Mycobacterium phage WideWale] >gb|QXN74122.1| hypothetical protein SEA_MICULUCIGAS_93 [Mycobacterium Phage MiculUcigas] >gb|AIT13409.1| hypothetical protein PBI_EQUEMIOH13_93 [Mycobacterium phage Equemioh13], Coverage= 100.0, SubjectRange= 1:109, QueryRange= 1:109, EValue= 9.29195E-75. HHPRED= . CDD= . CDS complement (50243 - 50533) /gene="92" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_92" /note=Original Glimmer call @bp 50533 has strength 9.32; Genemark calls start at 50533 /note=SSC: Start = 50533, Stop = 50243. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.692 is the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 291 bp is the longest possible ORF. GAP: 1 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Centaur, ProteinNumber= 94, Function= function unknown, EValue= 5.0E-56. NCBIBLAST= PhageName= hypothetical protein KIY82_gp13 [Mycobacterium phage Centaur] >gb|AOZ64037.1| hypothetical protein SEA_BAEHEXIC_93 [Mycobacterium phage Baehexic] >gb|AZF93478.1| hypothetical protein SEA_CENTAUR_94 [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:96, QueryRange= 1:96, EValue= 8.43337E-64. HHPRED= . CDD= . CDS complement (50535 - 50729) /gene="93" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_93" /note=Original Glimmer call @bp 50729 has strength 15.18; Genemark calls start at 50729 /note=SSC: Start = 50729, Stop = 50535. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.104 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 195 bp is not the longest possible ORF. GAP: 10 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Sknot_Draft, ProteinNumber= 95, Function= function unknown, EValue= 6.0E-31. NCBIBLAST= PhageName= hypothetical protein KIY82_gp12 [Mycobacterium phage Centaur] >gb|AOZ64038.1| hypothetical protein SEA_BAEHEXIC_94 [Mycobacterium phage Baehexic] >gb|AZF93479.1| hypothetical protein SEA_CENTAUR_95 [Mycobacterium phage Centaur], Coverage= 100.0, SubjectRange= 1:64, QueryRange= 1:64, EValue= 1.0326E-38. HHPRED= . CDD= . CDS complement (50740 - 51456) /gene="94" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_94" /note=Original Glimmer call @bp 51456 has strength 11.55; Genemark calls start at 51456 /note=SSC: Start = 51456, Stop = 50740. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 1.575 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 717 bp is not the longest possible ORF. GAP: 112 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Equemioh13, ProteinNumber= 95, Function= function unknown, EValue= 1.0E-139. NCBIBLAST= PhageName= hypothetical protein AVV38_gp10 [Mycobacterium phage Piro94] >ref|YP_009203364.1| hypothetical protein AVT12_gp11 [Mycobacterium phage Equemioh13] >ref|YP_010063711.1| hypothetical protein KIY82_gp11 [Mycobacterium phage Centaur] >gb|AMB18586.1| hypothetical protein NASIATALIE_96 [Mycobacterium phage NaSiaTalie] >gb|AOZ64039.1| hypothetical protein SEA_BAEHEXIC_95 [Mycobacterium phage Baehexic] >gb|ASZ72884.1| hypothetical protein SEA_DRAKE55_95 [Mycobacterium phage Drake55] >gb|ATN92268.1| hypothetical protein SEA_UPDAWG_96 [Mycobacterium phage Updawg] >gb|AYD86370.1| hypothetical protein SEA_FLARE16_95 [Mycobacterium phage Flare16] >gb|QDM57297.1| hypothetical protein SEA_WIDEWALE_96 [Mycobacterium phage WideWale] >gb|QXN74124.1| hypothetical protein SEA_MICULUCIGAS_95 [Mycobacterium Phage MiculUcigas] , Coverage= 100.0, SubjectRange= 1:238, QueryRange= 1:238, EValue= 1.08856E-175. HHPRED= . CDD= . CDS complement (51569 - 51862) /gene="95" /product="Hypothetical Protein" /function="Hypothetical Protein" /locus tag="Sknot_95" /note=Original Glimmer call @bp 51862 has strength 7.37; Genemark calls start at 51775 /note=SSC: Start = 51862, Stop = 51569. (Reverse). CP: Does contain all GeneMarkHost capacity. SD: ZScore 2.621 is the highest start score. SCS: Start is called by Glimmer and is not called by Genemark. LO: 294 bp is the longest possible ORF. GAP: 0 bp. ST: SS=NA. F: Hypothetical Protein. FS: PHDBLAST= PhageName= Flare16, ProteinNumber= 97, Function= function unknown, EValue= 2.0E-51. NCBIBLAST= PhageName= hypothetical protein AVT12_gp09 [Mycobacterium phage Equemioh13] >ref|YP_010063713.1| hypothetical protein KIY82_gp09 [Mycobacterium phage Centaur] >gb|AMB18588.1| hypothetical protein NASIATALIE_98 [Mycobacterium phage NaSiaTalie] >gb|ATN92270.1| hypothetical protein SEA_UPDAWG_98 [Mycobacterium phage Updawg] >gb|AYD86372.1| hypothetical protein SEA_FLARE16_97 [Mycobacterium phage Flare16] >gb|QDM57299.1| hypothetical protein SEA_WIDEWALE_98 [Mycobacterium phage WideWale] >gb|QXN74126.1| hypothetical protein SEA_MICULUCIGAS_97 [Mycobacterium Phage MiculUcigas], Coverage= 100.0, SubjectRange= 1:97, QueryRange= 1:97, EValue= 4.18822E-62. HHPRED= . CDD= .