CDS 1 - 1032
  /gene="1"
  /product="gp1"
  /function="Hypothetical Protein"
  /locus tag="Sting_1"
    /note=Original Glimmer call @bp 1 has strength 16.1; Genemark calls start at 1
    /note=SSC: 1-1032 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_1 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.993, -5.425375072945052, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_1 [Gordonia phage Soos]],,WNM68731,99.1254,0.0 SIF-HHPRED: DUF932 ; Domain of unknown function (DUF932),,,PF06067.15,70.2624,99.9 SIF-Syn: 

CDS 1096 - 2841
  /gene="2"
  /product="gp2"
  /function="terminase, large subunit"
  /locus tag="Sting_2"
    /note=Original Glimmer call @bp 1096 has strength 10.55; Genemark calls start at 1096
    /note=SSC: 1096-2841 CP: yes SCS: both ST: SS BLAST-Start: [terminase large subunit [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 63 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.615, -4.113180079823027, yes F: terminase, large subunit SIF-BLAST: ,,[terminase large subunit [Gordonia phage Soos]],,WNM68732,99.3115,0.0 SIF-HHPRED: Terminase, large subunit; phage defense, pattern-recognition receptor, nlr, stand, atpase, ANTIVIRAL PROTEIN; HET: ATP;{Salmonella enterica},,,8DGC_F,88.1239,100.0 SIF-Syn: 
    /note=First terminase found,  terminase small subunit # 20

CDS 2872 - 3252
  /gene="3"
  /product="gp3"
  /function="HNH endonuclease"
  /locus tag="Sting_3"
    /note=Original Glimmer call @bp 2872 has strength 5.97; Genemark calls start at 2872
    /note=SSC: 2872-3252 CP: no SCS: both ST: SS BLAST-Start: [HNH endonuclease signature motif containing protein [Amycolatopsis sp. VC5-11]],,NCBI, q2:s19 86.5079% 3.46763E-24 GAP: 30 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.646, -3.8722383622006915, yes F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease signature motif containing protein [Amycolatopsis sp. VC5-11]],,WP_336158169,41.4201,3.46763E-24 SIF-HHPRED: d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SPO1 [TaxId: 10685]} | CLASS: Alpha and beta proteins (a+b), FOLD: His-Me finger endonucleases, SUPFAM: His-Me finger endonucleases, FAM: Intron-encoded homing endonucleases,,,SCOP_d1u3em1,76.1905,99.8 SIF-Syn: 
    /note=Checked Amino Acid Sequence: H-N-H lies between a 30 aa span.

CDS 3342 - 3620
  /gene="4"
  /product="gp4"
  /function="Hypothetical Protein"
  /locus tag="Sting_4"
    /note=Original Glimmer call @bp 3342 has strength 13.9; Genemark calls start at 3342
    /note=SSC: 3342-3620 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_3 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.71305E-60 GAP: 89 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.861, -2.7653702713535186, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_3 [Gordonia phage Soos]],,WNM68733,100.0,3.71305E-60 SIF-HHPRED:  SIF-Syn: 
    /note=The most likely Gene candidate contains a large (89bp) gap but aligns with the Pham Starterater Prediction

CDS 3638 - 4105
  /gene="5"
  /product="gp5"
  /function="membrane protein"
  /locus tag="Sting_5"
    /note=Original Glimmer call @bp 3638 has strength 10.81; Genemark calls start at 3638
    /note=SSC: 3638-4105 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_4 [Gordonia phage Soos]],,NCBI, q1:s8 100.0% 3.88155E-105 GAP: 17 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.997, -3.005970110175159, yes F: membrane protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_4 [Gordonia phage Soos]],,WNM68734,95.0617,3.88155E-105 SIF-HHPRED:  SIF-Syn: 

CDS 4102 - 4392
  /gene="6"
  /product="gp6"
  /function="Hypothetical Protein"
  /locus tag="Sting_6"
    /note=Original Glimmer call @bp 4102 has strength 15.96; Genemark calls start at 4102
    /note=SSC: 4102-4392 CP: yes SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_SOOS_5 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.12927E-57 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.768, -3.4897410997597818, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_5 [Gordonia phage Soos]],,WNM68735,96.875,2.12927E-57 SIF-HHPRED:  SIF-Syn: 

CDS 4392 - 4892
  /gene="7"
  /product="gp7"
  /function="Hypothetical Protein"
  /locus tag="Sting_7"
    /note=Original Glimmer call @bp 4392 has strength 15.81; Genemark calls start at 4392
    /note=SSC: 4392-4892 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_6 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.15569E-118 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.861, -2.8454123590742793, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_6 [Gordonia phage Soos]],,WNM68736,100.0,2.15569E-118 SIF-HHPRED:  SIF-Syn: 

CDS 4889 - 5158
  /gene="8"
  /product="gp8"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Sting_8"
    /note=Original Glimmer call @bp 4889 has strength 10.09; Genemark calls start at 4892
    /note=SSC: 4889-5158 CP: no SCS: both-gl ST: SS BLAST-Start: [helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,NCBI, q2:s1 98.8764% 1.62348E-56 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.148, -5.099421830326154, no F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,WNM68737,100.0,1.62348E-56 SIF-HHPRED: DUF2774 ; Protein of unknown function (DUF2774),,,PF11242.12,39.3258,98.1 SIF-Syn: 
    /note=Check approved function notes

CDS 5582 - 5920
  /gene="9"
  /product="gp9"
  /function="Hypothetical Protein"
  /locus tag="Sting_9"
    /note=Original Glimmer call @bp 5582 has strength 12.53; Genemark calls start at 5582
    /note=SSC: 5582-5920 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_9 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.53487E-78 GAP: 423 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.014, -2.442961286954254, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_9 [Gordonia phage Soos]],,WNM68739,100.0,1.53487E-78 SIF-HHPRED:  SIF-Syn: 
    /note=come back to check transmembrane prediction

CDS 5936 - 6535
  /gene="10"
  /product="gp10"
  /function="Hypothetical Protein"
  /locus tag="Sting_10"
    /note=Original Glimmer call @bp 5993 has strength 15.54; Genemark calls start at 5993
    /note=SSC: 5936-6535 CP: yes SCS: both-cs ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_10 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.12678E-141 GAP: 15 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.392, -3.8360440759163943, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_10 [Gordonia phage Soos]],,WNM68740,98.4925,7.12678E-141 SIF-HHPRED: Hypothetical protein PH0730; hypothetical protein, PH0730, Pyrococcus horikoshii OT3, Structural Genomics, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural; 1.8A {Pyrococcus horikoshii} SCOP: a.4.5.72, d.74.4.2,,,2P8T_A,59.2965,94.0 SIF-Syn: 

CDS 6539 - 7018
  /gene="11"
  /product="gp11"
  /function="Hypothetical Protein"
  /locus tag="Sting_11"
    /note=Original Glimmer call @bp 6539 has strength 10.11; Genemark calls start at 6539
    /note=SSC: 6539-7018 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_11 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.97205E-106 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.595, -3.678676728259483, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_11 [Gordonia phage Soos]],,WNM68741,98.1132,1.97205E-106 SIF-HHPRED:  SIF-Syn: 

CDS 7011 - 7382
  /gene="12"
  /product="gp12"
  /function="Hypothetical Protein"
  /locus tag="Sting_12"
    /note=Original Glimmer call @bp 7011 has strength 13.17; Genemark calls start at 7011
    /note=SSC: 7011-7382 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_12 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 9.89071E-81 GAP: -8 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.792, -5.5503138095533515, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_12 [Gordonia phage Soos]],,WNM68742,95.935,9.89071E-81 SIF-HHPRED:  SIF-Syn: 

CDS 7376 - 7768
  /gene="13"
  /product="gp13"
  /function="RusA-like resolvase"
  /locus tag="Sting_13"
    /note=Original Glimmer call @bp 7376 has strength 12.6; Genemark calls start at 7379
    /note=SSC: 7376-7768 CP: yes SCS: both-gl ST: SS BLAST-Start: [RusA-like resolvase [Gordonia phage Soos]],,NCBI, q2:s1 99.2308% 1.1706E-85 GAP: -7 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.843, -3.6320499574786824, yes F: RusA-like resolvase SIF-BLAST: ,,[RusA-like resolvase [Gordonia phage Soos]],,WNM68743,100.0,1.1706E-85 SIF-HHPRED: d.79.6.1 (A:) automated matches {Escherichia coli [TaxId: 562]} | CLASS: Alpha and beta proteins (a+b), FOLD: Bacillus chorismate mutase-like, SUPFAM: Holliday junction resolvase RusA, FAM: Holliday junction resolvase RusA,,,SCOP_d2h8ea_,90.0,99.8 SIF-Syn: 

CDS 7765 - 8364
  /gene="14"
  /product="gp14"
  /function="Hypothetical Protein"
  /locus tag="Sting_14"
    /note=Original Glimmer call @bp 7765 has strength 11.38; Genemark calls start at 7759
    /note=SSC: 7765-8364 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_14 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 9.71334E-144 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.656, -4.106817306804867, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_14 [Gordonia phage Soos]],,WNM68744,99.4975,9.71334E-144 SIF-HHPRED:  SIF-Syn: 
    /note=-unclear due to lots of high e-scores, big gaps, and very low coverage and probability
    /note=-hypothetical protein from NCBI blast was only decent piece of evidence
    /note=-gene mark and starterator do not align

CDS 8361 - 9164
  /gene="15"
  /product="gp15"
  /function="DnaE-like DNA polymerase III (alpha)"
  /locus tag="Sting_15"
    /note=Original Glimmer call @bp 8361 has strength 12.47; Genemark calls start at 8361
    /note=SSC: 8361-9164 CP: yes SCS: both ST: SS BLAST-Start: [DnaQ-like DNA polymerase III subunit [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.807, -5.0535707005373816, no F: DnaE-like DNA polymerase III (alpha) SIF-BLAST: ,,[DnaQ-like DNA polymerase III subunit [Gordonia phage Soos]],,WNM68745,98.8764,0.0 SIF-HHPRED: DNA polymerase III subunit epsilon; DNA editing Proofreading Exonuclease Polymerase, DNA Binding protein; 6.7A {Escherichia coli K12},,,5M1S_D,65.1685,99.7 SIF-Syn: 
    /note=higher matches with DNA polymerase III alpha, but could also match or be similar to the subunit verison

CDS 9161 - 9499
  /gene="16"
  /product="gp16"
  /function="Hypothetical Protein"
  /locus tag="Sting_16"
    /note=Original Glimmer call @bp 9161 has strength 8.15; Genemark calls start at 9161
    /note=SSC: 9161-9499 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_16 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.47809E-76 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.032, -4.59534204625343, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_16 [Gordonia phage Soos]],,WNM68746,99.1071,1.47809E-76 SIF-HHPRED:  SIF-Syn: 
    /note=minimal evidence from HHPRED with decent probability and coverage scores

CDS 9566 - 9796
  /gene="17"
  /product="gp17"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Sting_17"
    /note=Genemark calls start at 9566
    /note=SSC: 9566-9796 CP: no SCS: genemark ST: SS BLAST-Start: [helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 9.74806E-46 GAP: 66 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.171, -2.1924212546750814, yes F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,WNM68747,100.0,9.74806E-46 SIF-HHPRED: HTH_58 ; Helix-turn-helix domain,,,PF19575.3,56.5789,97.3 SIF-Syn: 
    /note=Reviewed 3-D structure on Alpha Fold: There are 3 alpha helices separated by a spacer region of 1-3 aa

CDS 9793 - 10191
  /gene="18"
  /product="gp18"
  /function="Hypothetical Protein"
  /locus tag="Sting_18"
    /note=Original Glimmer call @bp 9793 has strength 9.66; Genemark calls start at 9793
    /note=SSC: 9793-10191 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_18 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 5.25706E-84 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.768, -3.103539494358988, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_18 [Gordonia phage Soos]],,WNM68748,96.9697,5.25706E-84 SIF-HHPRED: Mitochondrial-processing peptidase subunit beta, mitochondrial isoform X1; mitochondria, respiration, bioenergetics, plants, ELECTRON TRANSPORT; HET: CDL, 3PE, PC1, HEC, HEM; 3.2A {Vigna radiata var. radiata},,,7JRG_M,57.5758,61.2 SIF-Syn: 
    /note=poor HHPRED evidence

CDS 10263 - 10748
  /gene="19"
  /product="gp19"
  /function="terminase, small subunit"
  /locus tag="Sting_19"
    /note=Original Glimmer call @bp 10263 has strength 10.45; Genemark calls start at 10263
    /note=SSC: 10263-10748 CP: no SCS: both ST: SS BLAST-Start: [terminase small subunit [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 6.33119E-114 GAP: 71 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.939, -2.66371296573402, yes F: terminase, small subunit SIF-BLAST: ,,[terminase small subunit [Gordonia phage Soos]],,WNM68749,100.0,6.33119E-114 SIF-HHPRED: Small Terminase subunit; viral genome packaging motor, small terminase, Pseudomonas phage PaP3, DNA BINDING PROTEIN, VIRAL PROTEIN; 3.95A {Pseudomonas phage NV1},,,7JOQ_ii,96.2733,97.7 SIF-Syn: 

CDS 10749 - 10862
  /gene="20"
  /product="gp20"
  /function="Hypothetical Protein"
  /locus tag="Sting_20"
    /note=Original Glimmer call @bp 10749 has strength 3.72; Genemark calls start at 10749
    /note=SSC: 10749-10862 CP: yes SCS: both ST: SS BLAST-Start:  GAP: 0 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.104, -2.253486910374644, yes F: Hypothetical Protein SIF-BLAST:  SIF-HHPRED:  SIF-Syn: 

CDS 10951 - 11394
  /gene="21"
  /product="gp21"
  /function="Hypothetical Protein"
  /locus tag="Sting_21"
    /note=Original Glimmer call @bp 10951 has strength 12.64; Genemark calls start at 10951
    /note=SSC: 10951-11394 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_20 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.27657E-106 GAP: 88 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.993, -5.425375072945052, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_20 [Gordonia phage Soos]],,WNM68750,99.3197,3.27657E-106 SIF-HHPRED: DUF488 ; Protein of unknown function, DUF488,,,PF04343.17,76.1905,99.6 SIF-Syn: 
    /note=appears to closely relate to Soos

CDS 11388 - 11642
  /gene="22"
  /product="gp22"
  /function="DNA binding protein"
  /locus tag="Sting_22"
    /note=Original Glimmer call @bp 11388 has strength 8.52; Genemark calls start at 11388
    /note=SSC: 11388-11642 CP: yes SCS: both ST: SS BLAST-Start:  GAP: -7 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.863, -5.699697059098805, no F: DNA binding protein SIF-BLAST:  SIF-HHPRED: d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]} | CLASS: Alpha and beta proteins (a+b), FOLD: TBP-like, SUPFAM: TATA-box binding protein-like, FAM: TATA-box binding protein (TBP), C-terminal domain,,,SCOP_d1aisa1,58.3333,55.1 SIF-Syn: 
    /note=not a lot of decent evidence...high e-value, low coverage and probability
    /note=pham starterator link is not working

CDS 11639 - 11821
  /gene="23"
  /product="gp23"
  /function="Hypothetical Protein"
  /locus tag="Sting_23"
    /note=Original Glimmer call @bp 11639 has strength 2.0
    /note=SSC: 11639-11821 CP: yes SCS: glimmer ST: NI BLAST-Start: [hypothetical protein SEA_SOOS_22 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.64785E-36 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.213, -6.325136091409906, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_22 [Gordonia phage Soos]],,WNM68752,100.0,7.64785E-36 SIF-HHPRED: d.4.1.8 (A:513-673) CRISPR-associated endonuclease Cas9/Csn1, HNH domain {Actinomyces naeslundii [TaxId: 1115803]} | CLASS: Alpha and beta proteins (a+b), FOLD: His-Me finger endonucleases, SUPFAM: His-Me finger endonucleases, FAM: HNH domain from CRISPR-associated protein Cas9,,,SCOP_d4ogca2,80.0,63.5 SIF-Syn: 
    /note=lacking HHPRED evidence

CDS 11818 - 12324
  /gene="24"
  /product="gp24"
  /function="Hypothetical Protein"
  /locus tag="Sting_24"
    /note=Original Glimmer call @bp 11818 has strength 9.55; Genemark calls start at 11818
    /note=SSC: 11818-12324 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_23 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.10762E-100 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.784, -5.118120525712711, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_23 [Gordonia phage Soos]],,WNM68753,75.9434,2.10762E-100 SIF-HHPRED:  SIF-Syn: 
    /note=first option in HHPRED with the lowest e-value may work as evidence, but has low coverage and not a very good e-value

CDS 12324 - 12536
  /gene="25"
  /product="gp25"
  /function="Hypothetical Protein"
  /locus tag="Sting_25"
    /note=Original Glimmer call @bp 12324 has strength 13.5; Genemark calls start at 12324
    /note=SSC: 12324-12536 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_24 [Gordonia phage Soos]],,NCBI, q1:s1 97.1429% 4.24613E-32 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.532, -5.649978513542845, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_24 [Gordonia phage Soos]],,WNM68754,88.5714,4.24613E-32 SIF-HHPRED:  SIF-Syn: 

CDS 12533 - 12760
  /gene="26"
  /product="gp26"
  /function="membrane protein"
  /locus tag="Sting_26"
    /note=Original Glimmer call @bp 12542 has strength 10.37; Genemark calls start at 12533
    /note=SSC: 12533-12760 CP: no SCS: both-gm ST: SS BLAST-Start: [membrane protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 9.72839E-46 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.885, -4.966271270034708, yes F: membrane protein SIF-BLAST: ,,[membrane protein [Gordonia phage Soos]],,WNM68755,100.0,9.72839E-46 SIF-HHPRED:  SIF-Syn: 

tRNA 12801 - 12874
  /gene="27"
  /product="tRNA-Gly(ccc)"
  /locus tag="STING_27"
    /note=tRNA-Gly(ccc)

CDS 12948 - 14306
  /gene="28"
  /product="gp28"
  /function="Hypothetical Protein"
  /locus tag="Sting_28"
    /note=Original Glimmer call @bp 12948 has strength 14.08; Genemark calls start at 12930
    /note=SSC: 12948-14306 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_26 [Gordonia phage Soos]],,NCBI, q1:s7 100.0% 0.0 GAP: 187 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.033, -5.6143107014447535, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_26 [Gordonia phage Soos]],,WNM68756,98.69,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 14312 - 15256
  /gene="29"
  /product="gp29"
  /function="ParB-like nuclease domain"
  /locus tag="Sting_29"
    /note=Original Glimmer call @bp 14312 has strength 14.48; Genemark calls start at 14303
    /note=SSC: 14312-15256 CP: yes SCS: both-gl ST: SS BLAST-Start: [ParB-like nuclease domain protein [Gordonia phage Soos]],,NCBI, q1:s4 100.0% 0.0 GAP: 5 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.959, -5.020155606601113, no F: ParB-like nuclease domain SIF-BLAST: ,,[ParB-like nuclease domain protein [Gordonia phage Soos]],,WNM68757,98.7382,0.0 SIF-HHPRED: ParB family protein; DNA-binding protein, CTP, Myxococcus, DNA-segregation, DNA BINDING PROTEIN; HET: UFQ, GOL; 1.7A {Myxococcus xanthus (strain DK 1622)},,,7BNR_B,41.0828,99.5 SIF-Syn: 

CDS 15438 - 15743
  /gene="30"
  /product="gp30"
  /function="Hypothetical Protein"
  /locus tag="Sting_30"
    /note=Original Glimmer call @bp 15438 has strength 15.77; Genemark calls start at 15438
    /note=SSC: 15438-15743 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_28 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.14565E-63 GAP: 181 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.939, -2.6013996449736907, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_28 [Gordonia phage Soos]],,WNM68758,100.0,1.14565E-63 SIF-HHPRED:  SIF-Syn: 

CDS 15746 - 15901
  /gene="31"
  /product="gp31"
  /function="Hypothetical Protein"
  /locus tag="Sting_31"
    /note=Original Glimmer call @bp 15746 has strength 13.47; Genemark calls start at 15746
    /note=SSC: 15746-15901 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_29 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.34962E-26 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.861, -2.9063687850157054, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_29 [Gordonia phage Soos]],,WNM68759,100.0,3.34962E-26 SIF-HHPRED: Transcriptional regulator, TetR family; YP_510936.1, Putative TetR Transcriptional Regulator, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative; HET: MSE, STE; 1.79A {Jannaschia sp.},,,3CJD_A,58.8235,85.9 SIF-Syn: 

CDS 15901 - 16095
  /gene="32"
  /product="gp32"
  /function="Hypothetical Protein"
  /locus tag="Sting_32"
    /note=Original Glimmer call @bp 15901 has strength 7.8; Genemark calls start at 15901
    /note=SSC: 15901-16095 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_30 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.03954E-38 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.765, -3.0478325568523097, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_30 [Gordonia phage Soos]],,WNM68760,100.0,1.03954E-38 SIF-HHPRED:  SIF-Syn: 
    /note=-

CDS 16095 - 16241
  /gene="33"
  /product="gp33"
  /function="Hypothetical Protein"
  /locus tag="Sting_33"
    /note=Original Glimmer call @bp 16095 has strength 16.0; Genemark calls start at 16095
    /note=SSC: 16095-16241 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_31 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 4.62781E-27 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.806, -3.0228743540871426, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_31 [Gordonia phage Soos]],,WNM68761,100.0,4.62781E-27 SIF-HHPRED:  SIF-Syn: 
    /note=Inside -transmembrane protein

CDS 16238 - 16582
  /gene="34"
  /product="gp34"
  /function="Hypothetical Protein"
  /locus tag="Sting_34"
    /note=Original Glimmer call @bp 16238 has strength 15.34; Genemark calls start at 16238
    /note=SSC: 16238-16582 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_32 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.97155E-77 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.536, -3.5316035464369326, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_32 [Gordonia phage Soos]],,WNM68762,100.0,1.97155E-77 SIF-HHPRED:  SIF-Syn: 
    /note=inner membrane

CDS 16579 - 16686
  /gene="35"
  /product="gp35"
  /function="Hypothetical Protein"
  /locus tag="Sting_35"
    /note=Genemark calls start at 16579
    /note=SSC: 16579-16686 CP: no SCS: genemark ST: NI BLAST-Start: [hypothetical protein PQD13_gp36 [Gordonia phage Clawz] ],,NCBI, q3:s4 94.2857% 4.73193E-13 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.014, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein PQD13_gp36 [Gordonia phage Clawz] ],,YP_010675465,86.1111,4.73193E-13 SIF-HHPRED:  SIF-Syn: 
    /note=inner membrane

CDS 16683 - 17000
  /gene="36"
  /product="gp36"
  /function="Hypothetical Protein"
  /locus tag="Sting_36"
    /note=Original Glimmer call @bp 16683 has strength 12.33; Genemark calls start at 16683
    /note=SSC: 16683-17000 CP: no SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_33 [Gordonia phage Soos]],,NCBI, q38:s3 64.7619% 4.28642E-41 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.014, -2.5052746077145835, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_33 [Gordonia phage Soos]],,WNM68763,97.1429,4.28642E-41 SIF-HHPRED:  SIF-Syn: 
    /note=inner membrane

CDS 16997 - 17254
  /gene="37"
  /product="gp37"
  /function="Hypothetical Protein"
  /locus tag="Sting_37"
    /note=Original Glimmer call @bp 16997 has strength 16.25; Genemark calls start at 16997
    /note=SSC: 16997-17254 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_34 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 6.60448E-52 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.939, -2.6814417326944517, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_34 [Gordonia phage Soos]],,WNM68764,100.0,6.60448E-52 SIF-HHPRED:  SIF-Syn: 
    /note=no indication of transmembrane protein

CDS 17258 - 17413
  /gene="38"
  /product="gp38"
  /function="Hypothetical Protein"
  /locus tag="Sting_38"
    /note=Original Glimmer call @bp 17258 has strength 15.12; Genemark calls start at 17258
    /note=SSC: 17258-17413 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_35 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.82535E-28 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.093, -2.2763497933341483, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_35 [Gordonia phage Soos]],,WNM68765,100.0,3.82535E-28 SIF-HHPRED:  SIF-Syn: 
    /note=Transmembrane prediction only has line on inside

CDS 17529 - 17855
  /gene="39"
  /product="gp39"
  /function="membrane protein"
  /locus tag="Sting_39"
    /note=Original Glimmer call @bp 17529 has strength 13.19; Genemark calls start at 17529
    /note=SSC: 17529-17855 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.56371E-70 GAP: 115 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.553, -6.831815590149122, yes F: membrane protein SIF-BLAST: ,,[membrane protein [Gordonia phage Soos]],,WNM68766,100.0,7.56371E-70 SIF-HHPRED: DUF1360 ; Protein of unknown function (DUF1360),,,PF07098.15,86.1111,99.9 SIF-Syn: 

CDS 17868 - 19826
  /gene="40"
  /product="gp40"
  /function="portal protein"
  /locus tag="Sting_40"
    /note=Original Glimmer call @bp 17868 has strength 12.15; Genemark calls start at 17868
    /note=SSC: 17868-19826 CP: yes SCS: both ST: SS BLAST-Start: [portal protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.008, -2.5969056218148614, no F: portal protein SIF-BLAST: ,,[portal protein [Gordonia phage Soos]],,WNM68767,99.5399,0.0 SIF-HHPRED: Portal protein; Prohead I, icosahedral symmetry, HK97, phage, capsid, VIRUS; 3.6A {Escherichia phage HK97},,,8FQL_L,60.5828,100.0 SIF-Syn: 
    /note=no evidence towards it being a transmembrane protein

CDS 19829 - 22612
  /gene="41"
  /product="gp41"
  /function="capsid maturation protease"
  /locus tag="Sting_41"
    /note=Original Glimmer call @bp 19829 has strength 10.04; Genemark calls start at 19829
    /note=SSC: 19829-22612 CP: yes SCS: both ST: SS BLAST-Start: [capsid maturation protease [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.839, -5.273552388616308, no F: capsid maturation protease SIF-BLAST: ,,[capsid maturation protease [Gordonia phage Soos]],,WNM68768,99.6764,0.0 SIF-HHPRED:  SIF-Syn: 
    /note=went through re-run process of all databases, very long gene

CDS 22609 - 22767
  /gene="42"
  /product="gp42"
  /function="Hypothetical Protein"
  /locus tag="Sting_42"
    /note=Original Glimmer call @bp 22609 has strength 10.61; Genemark calls start at 22648
    /note=SSC: 22609-22767 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_39 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.3353E-28 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.806, -2.881875840424956, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_39 [Gordonia phage Soos]],,WNM68769,100.0,2.3353E-28 SIF-HHPRED:  SIF-Syn: 
    /note=different glimmer and gene mark start...lower levels on gene mark

CDS 22856 - 24646
  /gene="43"
  /product="gp43"
  /function="major capsid hexamer protein"
  /locus tag="Sting_43"
    /note=Original Glimmer call @bp 22856 has strength 11.94; Genemark calls start at 22856
    /note=SSC: 22856-24646 CP: yes SCS: both ST: SS BLAST-Start: [major capsid hexamer protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 88 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.014, -2.523003374675015, yes F: major capsid hexamer protein SIF-BLAST: ,,[major capsid hexamer protein [Gordonia phage Soos]],,WNM68770,98.9933,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 24728 - 25495
  /gene="44"
  /product="gp44"
  /function="major capsid pentamer protein"
  /locus tag="Sting_44"
    /note=Original Glimmer call @bp 24728 has strength 8.47; Genemark calls start at 24728
    /note=SSC: 24728-25495 CP: yes SCS: both ST: SS BLAST-Start: [major capsid pentamer protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 81 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.171, -2.1924212546750814, yes F: major capsid pentamer protein SIF-BLAST: ,,[major capsid pentamer protein [Gordonia phage Soos]],,WNM68771,100.0,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 25506 - 25859
  /gene="45"
  /product="gp45"
  /function="Hypothetical Protein"
  /locus tag="Sting_45"
    /note=Original Glimmer call @bp 25506 has strength 11.71; Genemark calls start at 25506
    /note=SSC: 25506-25859 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.27276E-71 GAP: 10 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.354, -3.898968357315439, yes F: Hypothetical Protein SIF-BLAST: ,,[membrane protein [Gordonia phage Soos]],,WNM68772,100.0,2.27276E-71 SIF-HHPRED:  SIF-Syn: 
    /note=evidence for membrane protein, but DEEPTMHMM does not show evidence for membrane...

CDS 25901 - 26152
  /gene="46"
  /product="gp46"
  /function="membrane protein"
  /locus tag="Sting_46"
    /note=Original Glimmer call @bp 26039 has strength 6.78; Genemark calls start at 25901
    /note=SSC: 25901-26152 CP: yes SCS: both-gm ST: SS BLAST-Start: [membrane protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.88969E-52 GAP: 41 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.197, -5.21746608827694, no F: membrane protein SIF-BLAST: ,,[membrane protein [Gordonia phage Soos]],,WNM68773,100.0,7.88969E-52 SIF-HHPRED:  SIF-Syn: 
    /note=starterator link is not working, but clear evidence for membrane protein

CDS 26149 - 26625
  /gene="47"
  /product="gp47"
  /function="membrane protein"
  /locus tag="Sting_47"
    /note=Original Glimmer call @bp 26149 has strength 10.53; Genemark calls start at 26149
    /note=SSC: 26149-26625 CP: yes SCS: both ST: SS BLAST-Start: [membrane protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.30069E-112 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.664, -3.708850054194189, no F: membrane protein SIF-BLAST: ,,[membrane protein [Gordonia phage Soos]],,WNM68774,100.0,3.30069E-112 SIF-HHPRED:  SIF-Syn: 
    /note=Checked Using DeepTMHMM

CDS 26704 - 27447
  /gene="48"
  /product="gp48"
  /function="major tail protein"
  /locus tag="Sting_48"
    /note=Original Glimmer call @bp 26704 has strength 18.04; Genemark calls start at 26704
    /note=SSC: 26704-27447 CP: yes SCS: both ST: SS BLAST-Start: [major tail protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.62982E-180 GAP: 78 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.014, -2.5052746077145835, yes F: major tail protein SIF-BLAST: ,,[major tail protein [Gordonia phage Soos]],,WNM68775,100.0,2.62982E-180 SIF-HHPRED:  SIF-Syn: 

CDS 27503 - 28273
  /gene="49"
  /product="gp49"
  /function="head-to-tail adaptor"
  /locus tag="Sting_49"
    /note=Original Glimmer call @bp 27503 has strength 13.72; Genemark calls start at 27527
    /note=SSC: 27503-28273 CP: yes SCS: both-gl ST: SS BLAST-Start: [head-to-tail adaptor [Gordonia phage Soos]],,NCBI, q9:s1 96.875% 0.0 GAP: 55 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.452, -3.628472733356124, yes F: head-to-tail adaptor SIF-BLAST: ,,[head-to-tail adaptor [Gordonia phage Soos]],,WNM68776,100.0,0.0 SIF-HHPRED: Head completion protein; Neck, Portal, T5, VIRUS, VIRAL PROTEIN; 3.2A {Escherichia phage DT57C},,,8HQO_S,82.4219,99.7 SIF-Syn: 
    /note=Gene Contains HHPRED alignment with crystal structure SPP1 15 and yqbG

CDS 28273 - 28815
  /gene="50"
  /product="gp50"
  /function="Hypothetical Protein"
  /locus tag="Sting_50"
    /note=Original Glimmer call @bp 28273 has strength 10.98; Genemark calls start at 28273
    /note=SSC: 28273-28815 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_47 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 6.71663E-127 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.624, -3.329294830936593, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_47 [Gordonia phage Soos]],,WNM68777,99.4444,6.71663E-127 SIF-HHPRED:  SIF-Syn: 

CDS 28828 - 29181
  /gene="51"
  /product="gp51"
  /function="Hypothetical Protein"
  /locus tag="Sting_51"
    /note=Original Glimmer call @bp 28828 has strength 13.31; Genemark calls start at 28828
    /note=SSC: 28828-29181 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_48 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.17077E-75 GAP: 12 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.568, -3.46411222063, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_48 [Gordonia phage Soos]],,WNM68778,99.1453,2.17077E-75 SIF-HHPRED: Hypothetical protein yqbF; two-domain, Bsu26130, YqbF, NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; NMR {Bacillus subtilis} SCOP: a.140.3.2, d.344.1.1, l.1.1.1,,,2HJQ_A,92.3077,98.1 SIF-Syn: 

CDS 29181 - 29606
  /gene="52"
  /product="gp52"
  /function="tail assembly chaperone"
  /locus tag="Sting_52"
    /note=Original Glimmer call @bp 29181 has strength 8.81; Genemark calls start at 29181
    /note=SSC: 29181-29606 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_49 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.44524E-94 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.333, -5.990260583435862, no F: tail assembly chaperone SIF-BLAST: ,,[hypothetical protein SEA_SOOS_49 [Gordonia phage Soos]],,WNM68779,100.0,1.44524E-94 SIF-HHPRED: Minor_capsid_2 ; Minor capsid protein,,,PF11114.12,95.0355,99.5 SIF-Syn: 
    /note=need to verify second tail assembly chaperone and frame shift
    /note=is 2 gene away from tape measure protein

CDS 29770 - 30306
  /gene="53"
  /product="gp53"
  /function="tail assembly chaperone"
  /locus tag="Sting_53"
    /note=Original Glimmer call @bp 29770 has strength 13.63; Genemark calls start at 29770
    /note=SSC: 29770-30306 CP: yes SCS: both ST: SS BLAST-Start: [tail assembly chaperone [Gordonia phage Clawz] ],,NCBI, q1:s1 100.0% 1.9361E-111 GAP: 163 bp gap LO: no RBS: Kibler 6, Karlin Medium, 3.014, -2.5052746077145835, yes F: tail assembly chaperone SIF-BLAST: ,,[tail assembly chaperone [Gordonia phage Clawz] ],,YP_010675483,94.9721,1.9361E-111 SIF-HHPRED: Phage_TAC_10 ; Phage tail assembly chaperone,,,PF10963.12,43.2584,94.9 SIF-Syn: 
    /note=- need more information/evidence
    /note=- tac
    /note=has two slippery sequences GGAAAAG CGGGGGCG

CDS 30366 - 30587
  /gene="54"
  /product="gp54"
  /function="Hypothetical Protein"
  /locus tag="Sting_54"
    /note=Original Glimmer call @bp 30366 has strength 11.5; Genemark calls start at 30366
    /note=SSC: 30366-30587 CP: yes SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_SOOS_51 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 8.73421E-45 GAP: 59 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.964, -4.799575538075553, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_51 [Gordonia phage Soos]],,WNM68781,100.0,8.73421E-45 SIF-HHPRED:  SIF-Syn: 

CDS 30618 - 35807
  /gene="55"
  /product="gp55"
  /function="tape measure protein"
  /locus tag="Sting_55"
    /note=Original Glimmer call @bp 30618 has strength 11.39; Genemark calls start at 30618
    /note=SSC: 30618-35807 CP: yes SCS: both ST: SS BLAST-Start: [tape measure protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 30 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.056, -4.465043966605421, no F: tape measure protein SIF-BLAST: ,,[tape measure protein [Gordonia phage Soos]],,WNM68782,99.8265,0.0 SIF-HHPRED: Tape Measure Protein, gp57; phage tail, tail tip, tape measure protein, VIRAL PROTEIN; 3.7A {Staphylococcus virus 80alpha},,,6V8I_BF,7.0561,99.9 SIF-Syn: 

CDS 35818 - 37104
  /gene="56"
  /product="gp56"
  /function="minor tail protein"
  /locus tag="Sting_56"
    /note=Original Glimmer call @bp 35818 has strength 13.17; Genemark calls start at 35818
    /note=SSC: 35818-37104 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 10 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.615, -3.812150084159046, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Soos]],,WNM68783,99.7664,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 37104 - 38252
  /gene="57"
  /product="gp57"
  /function="minor tail protein"
  /locus tag="Sting_57"
    /note=Original Glimmer call @bp 37104 has strength 14.69; Genemark calls start at 37104
    /note=SSC: 37104-38252 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: -1 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.67, -5.27979188736111, no F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Soos]],,WNM68784,100.0,0.0 SIF-HHPRED: Tail protein, 43 kDa; tail protein, structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics, UNKNOWN FUNCTION; 2.1A {Neisseria meningitidis MC58} SCOP: b.106.1.1,,,3D37_A,88.4817,99.7 SIF-Syn: 

CDS 38249 - 38470
  /gene="58"
  /product="gp58"
  /function="minor tail protein"
  /locus tag="Sting_58"
    /note=Original Glimmer call @bp 38249 has strength 7.15; Genemark calls start at 38249
    /note=SSC: 38249-38470 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Gordonia phage Clawz] ],,NCBI, q1:s1 100.0% 4.29454E-44 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.215, -4.782222827850149, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Clawz] ],,YP_010675488,97.2603,4.29454E-44 SIF-HHPRED:  SIF-Syn: 

CDS 38463 - 38810
  /gene="59"
  /product="gp59"
  /function="Hypothetical Protein"
  /locus tag="Sting_59"
    /note=Original Glimmer call @bp 38463 has strength 13.67; Genemark calls start at 38463
    /note=SSC: 38463-38810 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_56 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 6.36535E-77 GAP: -8 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.414, -3.7091199845487814, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_56 [Gordonia phage Soos]],,WNM68786,100.0,6.36535E-77 SIF-HHPRED:  SIF-Syn: 

CDS 38813 - 39436
  /gene="60"
  /product="gp60"
  /function="Hypothetical Protein"
  /locus tag="Sting_60"
    /note=Original Glimmer call @bp 38813 has strength 15.02; Genemark calls start at 38813
    /note=SSC: 38813-39436 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_57 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 4.47422E-148 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.509, -3.5707972674952195, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_57 [Gordonia phage Soos]],,WNM68787,100.0,4.47422E-148 SIF-HHPRED:  SIF-Syn: 

CDS 39436 - 39573
  /gene="61"
  /product="gp61"
  /function="Hypothetical Protein"
  /locus tag="Sting_61"
    /note=Original Glimmer call @bp 39436 has strength 15.27; Genemark calls start at 39436
    /note=SSC: 39436-39573 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_58 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.06245E-20 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.392, -3.8183153089559627, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_58 [Gordonia phage Soos]],,WNM68788,100.0,2.06245E-20 SIF-HHPRED:  SIF-Syn: 

CDS 39693 - 40766
  /gene="62"
  /product="gp62"
  /function="minor tail protein"
  /locus tag="Sting_62"
    /note=Original Glimmer call @bp 39693 has strength 10.31; Genemark calls start at 39693
    /note=SSC: 39693-40766 CP: yes SCS: both ST: SS BLAST-Start: [minor tail protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 119 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.014, -2.523003374675015, yes F: minor tail protein SIF-BLAST: ,,[minor tail protein [Gordonia phage Soos]],,WNM68789,99.7199,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 40766 - 41485
  /gene="63"
  /product="gp63"
  /function="Hypothetical Protein"
  /locus tag="Sting_63"
    /note=Original Glimmer call @bp 40766 has strength 11.45; Genemark calls start at 40766
    /note=SSC: 40766-41485 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_60 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.02577E-173 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.557, -3.4080892535965868, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_60 [Gordonia phage Soos]],,WNM68790,100.0,7.02577E-173 SIF-HHPRED:  SIF-Syn: 

CDS 41499 - 44273
  /gene="64"
  /product="gp64"
  /function="endolysin"
  /locus tag="Sting_64"
    /note=Original Glimmer call @bp 41499 has strength 11.79; Genemark calls start at 41499
    /note=SSC: 41499-44273 CP: yes SCS: both ST: NI BLAST-Start: [lysin A [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 13 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.997, -2.5588120788329394, yes F: endolysin SIF-BLAST: ,,[lysin A [Gordonia phage Soos]],,WNM68791,99.7835,0.0 SIF-HHPRED: Putative secreted protein; mycobacterium tuberculosis arabinogalactan, HYDROLASE; HET: SIN; 2.41A {Mycobacterium tuberculosis H37Rv},,,8AN0_A,37.2294,100.0 SIF-Syn: 

CDS 44270 - 44677
  /gene="65"
  /product="gp65"
  /function="holin"
  /locus tag="Sting_65"
    /note=Original Glimmer call @bp 44270 has strength 14.53; Genemark calls start at 44270
    /note=SSC: 44270-44677 CP: yes SCS: both ST: SS BLAST-Start: [holin [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.66381E-90 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.997, -2.4787699911121788, yes F: holin SIF-BLAST: ,,[holin [Gordonia phage Soos]],,WNM68792,100.0,1.66381E-90 SIF-HHPRED:  SIF-Syn: 
    /note=Meets the following requirements
    /note=-Two transmembrane proteins present the Sting Genome
    /note=-The hypothesized holin gene is adjacent to an endolysin.

CDS 44674 - 45036
  /gene="66"
  /product="gp66"
  /function="tail fiber"
  /locus tag="Sting_66"
    /note=Original Glimmer call @bp 44674 has strength 9.02; Genemark calls start at 44674
    /note=SSC: 44674-45036 CP: yes SCS: both ST: SS BLAST-Start: [tail fiber [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 4.70912E-78 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.759, -5.619697951461639, no F: tail fiber SIF-BLAST: ,,[tail fiber [Gordonia phage Soos]],,WNM68793,100.0,4.70912E-78 SIF-HHPRED: L-shaped tail fiber protein p132; Bacteriophage, Siphophage, T5, baseplate, VIRAL PROTEIN; 3.45A {Escherichia phage T5},,,7QG9_S,90.0,99.4 SIF-Syn: 

CDS 45033 - 45452
  /gene="67"
  /product="gp67"
  /function="Hypothetical Protein"
  /locus tag="Sting_67"
    /note=Original Glimmer call @bp 45033 has strength 9.44; Genemark calls start at 45042
    /note=SSC: 45033-45452 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_64 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.60882E-94 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.206, -4.290417282676006, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_64 [Gordonia phage Soos]],,WNM68794,100.0,1.60882E-94 SIF-HHPRED:  SIF-Syn: 
    /note=DEEP TMHMM involves "signal" instead of membrane

CDS 45498 - 46613
  /gene="68"
  /product="gp68"
  /function="Hypothetical Protein"
  /locus tag="Sting_68"
    /note=Original Glimmer call @bp 45498 has strength 11.14; Genemark calls start at 45498
    /note=SSC: 45498-46613 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_65 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 45 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.104, -2.3335289980954053, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_65 [Gordonia phage Soos]],,WNM68795,100.0,0.0 SIF-HHPRED:  SIF-Syn: 

CDS 46623 - 47261
  /gene="69"
  /product="gp69"
  /function="Hypothetical Protein"
  /locus tag="Sting_69"
    /note=Original Glimmer call @bp 46623 has strength 11.33; Genemark calls start at 46623
    /note=SSC: 46623-47261 CP: yes SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_SOOS_66 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.59204E-153 GAP: 9 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.216, -6.317717280514785, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_66 [Gordonia phage Soos]],,WNM68796,100.0,2.59204E-153 SIF-HHPRED:  SIF-Syn: 

CDS 47279 - 47896
  /gene="70"
  /product="gp70"
  /function="Hypothetical Protein"
  /locus tag="Sting_70"
    /note=Original Glimmer call @bp 47279 has strength 8.55; Genemark calls start at 47279
    /note=SSC: 47279-47896 CP: yes SCS: both ST: NI BLAST-Start: [hypothetical protein SEA_SOOS_67 [Gordonia phage Soos]],,NCBI, q2:s9 99.5122% 8.85984E-146 GAP: 17 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.094, -4.735499778253244, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_67 [Gordonia phage Soos]],,WNM68797,96.2264,8.85984E-146 SIF-HHPRED:  SIF-Syn: 

CDS 48001 - 48225
  /gene="71"
  /product="gp71"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Sting_71"
    /note=Original Glimmer call @bp 48001 has strength 16.12; Genemark calls start at 48001
    /note=SSC: 48001-48225 CP: yes SCS: both ST: SS BLAST-Start: [helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.67594E-47 GAP: 104 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.093, -2.2763497933341483, yes F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,WNM68798,100.0,1.67594E-47 SIF-HHPRED: Recombination Directionality Factor RdfS; Excisionase, Recombination Directionality Factor, winged helix-turn-helix, superhelix, DNA BINDING PROTEIN; HET: GOL; 2.45A {Mesorhizobium japonicum R7A},,,8DGL_A,78.3784,99.0 SIF-Syn: 
    /note=Reviewed 3-D structure on Alpha Fold: There are 2 alpha helices separated by a spacer region of 4 aa

CDS 48222 - 48599
  /gene="72"
  /product="gp72"
  /function="Hypothetical Protein"
  /locus tag="Sting_72"
    /note=Original Glimmer call @bp 48222 has strength 15.5; Genemark calls start at 48222
    /note=SSC: 48222-48599 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_69 [Gordonia phage Soos]],,NCBI, q1:s1 99.2% 2.23775E-85 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.918, -2.7254235724530456, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_69 [Gordonia phage Soos]],,WNM68799,99.2,2.23775E-85 SIF-HHPRED:  SIF-Syn: 

CDS 48603 - 49454
  /gene="73"
  /product="gp73"
  /function="Hypothetical Protein"
  /locus tag="Sting_73"
    /note=Original Glimmer call @bp 48603 has strength 16.87; Genemark calls start at 48603
    /note=SSC: 48603-49454 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_70 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 3 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.997, -2.8298788511194775, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_70 [Gordonia phage Soos]],,WNM68800,100.0,0.0 SIF-HHPRED: DUF2303 ; Uncharacterized conserved protein (DUF2303),,,PF10065.13,94.6996,100.0 SIF-Syn: 

CDS 49740 - 50501
  /gene="74"
  /product="gp74"
  /function="helix-turn-helix DNA binding domain"
  /locus tag="Sting_74"
    /note=Original Glimmer call @bp 49782 has strength 7.27
    /note=SSC: 49740-50501 CP: yes SCS: glimmer-cs ST: SS BLAST-Start: [helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,NCBI, q15:s1 94.4664% 2.54265E-171 GAP: 285 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.038, -4.565177092733586, no F: helix-turn-helix DNA binding domain SIF-BLAST: ,,[helix-turn-helix DNA binding domain protein [Gordonia phage Soos]],,WNM68801,100.0,2.54265E-171 SIF-HHPRED:  SIF-Syn: 
    /note=Reviewed 3-D structure on Alpha Fold: There are 2 alpha helices separated by a spacer region of 4 aa

CDS 50679 - 51107
  /gene="75"
  /product="gp75"
  /function="Hypothetical Protein"
  /locus tag="Sting_75"
    /note=Original Glimmer call @bp 50679 has strength 7.99; Genemark calls start at 50643
    /note=SSC: 50679-51107 CP: yes SCS: both-gl ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_72 [Gordonia phage Soos]],,NCBI, q1:s13 100.0% 6.78991E-95 GAP: 177 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.242, -4.152357863761557, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_72 [Gordonia phage Soos]],,WNM68802,92.2078,6.78991E-95 SIF-HHPRED:  SIF-Syn: 

CDS 51104 - 51454
  /gene="76"
  /product="gp76"
  /function="Hypothetical Protein"
  /locus tag="Sting_76"
    /note=Original Glimmer call @bp 51104 has strength 14.12; Genemark calls start at 51104
    /note=SSC: 51104-51454 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_73 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.70032E-77 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.939, -2.6013996449736907, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_73 [Gordonia phage Soos]],,WNM68803,100.0,1.70032E-77 SIF-HHPRED:  SIF-Syn: 

CDS 51451 - 51636
  /gene="77"
  /product="gp77"
  /function="Hypothetical Protein"
  /locus tag="Sting_77"
    /note=Original Glimmer call @bp 51451 has strength 10.67; Genemark calls start at 51451
    /note=SSC: 51451-51636 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_74 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 6.79746E-36 GAP: -4 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.641, -4.331019961814701, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_74 [Gordonia phage Soos]],,WNM68804,100.0,6.79746E-36 SIF-HHPRED:  SIF-Syn: 

CDS 51633 - 51797
  /gene="78"
  /product="gp78"
  /function="Hypothetical Protein"
  /locus tag="Sting_78"
    /note=Original Glimmer call @bp 51633 has strength 11.5; Genemark calls start at 51633
    /note=SSC: 51633-51797 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_75 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.05674E-32 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.839, -4.92368181563107, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_75 [Gordonia phage Soos]],,WNM68805,100.0,2.05674E-32 SIF-HHPRED:  SIF-Syn: 

CDS 51888 - 52184
  /gene="79"
  /product="gp79"
  /function="Hypothetical Protein"
  /locus tag="Sting_79"
    /note=Original Glimmer call @bp 51888 has strength 10.93; Genemark calls start at 51888
    /note=SSC: 51888-52184 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_76 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 2.15924E-64 GAP: 90 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.959, -4.810045260256, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_76 [Gordonia phage Soos]],,WNM68806,100.0,2.15924E-64 SIF-HHPRED:  SIF-Syn: 

CDS 52181 - 52483
  /gene="80"
  /product="gp80"
  /function="Hypothetical Protein"
  /locus tag="Sting_80"
    /note=Original Glimmer call @bp 52181 has strength 14.9; Genemark calls start at 52181
    /note=SSC: 52181-52483 CP: yes SCS: both ST: NA BLAST-Start: [hypothetical protein SEA_SOOS_77 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 8.72176E-68 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.058, -4.601664605840989, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_77 [Gordonia phage Soos]],,WNM68807,100.0,8.72176E-68 SIF-HHPRED:  SIF-Syn: 

CDS 52471 - 53493
  /gene="81"
  /product="gp81"
  /function="RecB-like exonuclease/helicase"
  /locus tag="Sting_81"
    /note=Original Glimmer call @bp 52471 has strength 16.86; Genemark calls start at 52471
    /note=SSC: 52471-53493 CP: yes SCS: both ST: SS BLAST-Start: [Cas4 exonuclease [Gordonia phage Soos]],,NCBI, q4:s1 99.1176% 0.0 GAP: -13 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.716, -4.121429081347883, yes F: RecB-like exonuclease/helicase SIF-BLAST: ,,[Cas4 exonuclease [Gordonia phage Soos]],,WNM68808,100.0,0.0 SIF-HHPRED: Uncharacterized protein R354; MIMIVIRE, Cas4-like, nuclease, R354, NUCLEAR PROTEIN; 2.806A {Acanthamoeba polyphaga mimivirus},,,5YET_B,90.8824,99.9 SIF-Syn: 

CDS 53568 - 55073
  /gene="82"
  /product="gp82"
  /function="ASCE ATPase"
  /locus tag="Sting_82"
    /note=Original Glimmer call @bp 53568 has strength 10.22; Genemark calls start at 53568
    /note=SSC: 53568-55073 CP: yes SCS: both ST: SS BLAST-Start: [ASCE ATPase [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 0.0 GAP: 74 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 1.454, -5.796882727134779, no F: ASCE ATPase SIF-BLAST: ,,[ASCE ATPase [Gordonia phage Soos]],,WNM68809,100.0,0.0 SIF-HHPRED: c.37.1.11 (A:5-270) automated matches {Mycobacterium smegmatis [TaxId: 246196]} | CLASS: Alpha and beta proteins (a/b), FOLD: P-loop containing nucleoside triphosphate hydrolases, SUPFAM: P-loop containing nucleoside triphosphate hydrolases, FAM: RecA protein-like (ATPase-domain),,,SCOP_d2zrja1,40.9182,99.4 SIF-Syn: 

CDS 55076 - 55303
  /gene="83"
  /product="gp83"
  /function="Hypothetical Protein"
  /locus tag="Sting_83"
    /note=Original Glimmer call @bp 55076 has strength 9.18; Genemark calls start at 55076
    /note=SSC: 55076-55303 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_80 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 5.07311E-46 GAP: 2 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 3.014, -2.523003374675015, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_80 [Gordonia phage Soos]],,WNM68810,100.0,5.07311E-46 SIF-HHPRED:  SIF-Syn: 

CDS 55306 - 55593
  /gene="84"
  /product="gp84"
  /function="Hypothetical Protein"
  /locus tag="Sting_84"
    /note=Original Glimmer call @bp 55306 has strength 7.49; Genemark calls start at 55306
    /note=SSC: 55306-55593 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_81 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 4.77814E-63 GAP: 2 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.861, -2.8454123590742793, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_81 [Gordonia phage Soos]],,WNM68811,98.9474,4.77814E-63 SIF-HHPRED:  SIF-Syn: 

CDS 55593 - 56015
  /gene="85"
  /product="gp85"
  /function="SSB protein"
  /locus tag="Sting_85"
    /note=Original Glimmer call @bp 55593 has strength 14.21; Genemark calls start at 55593
    /note=SSC: 55593-56015 CP: yes SCS: both ST: SS BLAST-Start: [SSB protein [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 3.6845E-98 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.939, -2.66371296573402, yes F: SSB protein SIF-BLAST: ,,[SSB protein [Gordonia phage Soos]],,WNM68812,99.2857,3.6845E-98 SIF-HHPRED: Single-stranded DNA-binding protein; DNA binding, quaternary structure, plasticity, inhibitor development, DNA BINDING PROTEIN; HET: FMT; 1.92A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)},,,7F5Y_B,77.8571,99.9 SIF-Syn: 

CDS 56015 - 56389
  /gene="86"
  /product="gp86"
  /function="HNH endonuclease"
  /locus tag="Sting_86"
    /note=Original Glimmer call @bp 56015 has strength 2.34
    /note=SSC: 56015-56389 CP: yes SCS: glimmer ST: SS BLAST-Start: [HNH endonuclease [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 7.4599E-87 GAP: -1 bp gap LO: no RBS: Kibler 6, Karlin Medium, 0.877, -7.095031720982019, no F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Gordonia phage Soos]],,WNM68817,100.0,7.4599E-87 SIF-HHPRED: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2},,,5H0M_A,66.129,98.1 SIF-Syn: 
    /note=Checked Amino Acid Sequence: HNH lies between a 30 aa sequence span.

CDS 56373 - 56864
  /gene="87"
  /product="gp87"
  /function="HNH endonuclease"
  /locus tag="Sting_87"
    /note=Original Glimmer call @bp 56373 has strength 7.42; Genemark calls start at 56373
    /note=SSC: 56373-56864 CP: yes SCS: both ST: SS BLAST-Start: [HNH endonuclease [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 9.29884E-118 GAP: -17 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.467, -3.659876950936526, no F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Gordonia phage Soos]],,WNM68813,100.0,9.29884E-118 SIF-HHPRED: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2},,,5H0M_A,73.0061,98.9 SIF-Syn: 
    /note=Checked Amino Acid Sequence: H-N-H lies between a 30 aa span.

CDS 56861 - 57070
  /gene="88"
  /product="gp88"
  /function="Hypothetical Protein"
  /locus tag="Sting_88"
    /note=Original Glimmer call @bp 56861 has strength 11.7; Genemark calls start at 56861
    /note=SSC: 56861-57070 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_85 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.23405E-41 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 2.349, -3.9881460756569185, no F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_85 [Gordonia phage Soos]],,WNM68814,100.0,1.23405E-41 SIF-HHPRED:  SIF-Syn: 

CDS 57102 - 57476
  /gene="89"
  /product="gp89"
  /function="Hypothetical Protein"
  /locus tag="Sting_89"
    /note=Original Glimmer call @bp 57102 has strength 14.09; Genemark calls start at 57102
    /note=SSC: 57102-57476 CP: yes SCS: both ST: SS BLAST-Start: [hypothetical protein SEA_SOOS_86 [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.42572E-86 GAP: 31 bp gap LO: yes RBS: Kibler 6, Karlin Medium, 2.918, -3.1725816037952645, yes F: Hypothetical Protein SIF-BLAST: ,,[hypothetical protein SEA_SOOS_86 [Gordonia phage Soos]],,WNM68815,99.1936,1.42572E-86 SIF-HHPRED:  SIF-Syn: 

CDS 57473 - 57853
  /gene="90"
  /product="gp90"
  /function="HNH endonuclease"
  /locus tag="Sting_90"
    /note=Original Glimmer call @bp 57485 has strength 10.52; Genemark calls start at 57485
    /note=SSC: 57473-57853 CP: no SCS: both-cs ST: NA BLAST-Start: [HNH endonuclease [Gordonia phage Soos]],,NCBI, q1:s1 100.0% 1.7545E-86 GAP: -4 bp gap LO: no RBS: Kibler 6, Karlin Medium, 1.708, -6.1066818627912935, no F: HNH endonuclease SIF-BLAST: ,,[HNH endonuclease [Gordonia phage Soos]],,WNM68816,99.2064,1.7545E-86 SIF-HHPRED: 5-methylcytosine-specific restriction enzyme A; HNH ENDONUCLEASE, MODIFICATION DEPENDENT RESTRICTION, 5-METHYLCYTOSINE, 5MC, 5-HYDROXYMETHYLCYTOSINE, 5HMC, BBA-ME NUCLEASE, ScoMcrA, HYDROLASE; 2.85A {Escherichia coli (strain K12)},,,6GHC_A,46.8254,97.9 SIF-Syn: 
    /note=Checked Amino Acid Sequence: H-N-H lies between a 30 aa span.