Gordonia phage APunk
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Detailed Information for Phage APunk
Discovery Information
Isolation HostGordonia terrae 3612
Found BySophia Bieri
Year Found2020
Location FoundGrand Rapids, MI United States
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates42.915811 N, 85.644374 W Map
Discovery NotesCollected from the edge of Zuidema Soccer Field, behind the vR wing and parking lot 8. The soil was moist and clumpy.
Naming NotesThis phage is named after a song called "A-Punk" by Vampire Weekend. The song is a bop, and my phage is an adorable little bacteria defeating "punk".
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 26, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1256
Genome length (bp)59154
Character of genome endsCircularly Permuted
GC Content67.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionCalvin University
Annotation StatusOverdue (Expected completion by 5/1/2021)
Plaque NotesPlaques were clear and circular, with diameters ranging from 1-2mm across. The edges were clear and defined. When plaques overlapped, the morphology became more difficult to ascertain.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 119
Pitt Freezer Box Grid# D12
Available Files
Plaque PictureDownload
EM PictureDownload