Mycobacterium phage Bipper
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Detailed Information for Phage Bipper
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAlexander Doyle
Year Found2014
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.446194, -79.9595 Map
Naming NotesI was going to name it skipper but i decided on something less nautical
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 6, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1353
Genome length (bp)77832
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceTGCCGCCCGGTA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterY
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesN/A
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Bipper_1
(DNA binding protein)

Bipper_2

Bipper_3
(queuine tRNA-ribosyltransferase)

Bipper_4

Bipper_5
(QueD-like queosine biosynthesis protein)

Bipper_6
(QueE-like queosine biosynthesis protein)

Bipper_7
(GTP cyclohydrolase I)

Bipper_8
(RNaseE)

Bipper_9
(terminase)

Bipper_10

Bipper_11
(portal protein)

Bipper_12
(capsid maturation protease)

Bipper_13
(major capsid protein)

Bipper_14
(head-to-tail connector protein)

Bipper_15
(head-to-tail connector protein)

Bipper_16
(head-to-tail connector protein)

Bipper_17
(head-to-tail connector protein)

Bipper_18
(head-to-tail connector protein)

Bipper_19
(major tail subunit)

Bipper_20
(tail assembly chaperone)

Bipper_21
(tail assembly chaperone)

Bipper_22
(tape measure protein)

Bipper_23
(minor tail protein)

Bipper_24
(minor tail protein)

Bipper_25
(minor tail protein)

Bipper_26
(minor tail protein)

Bipper_27
(minor tail protein)

Bipper_28
(minor tail protein)

Bipper_29

Bipper_30

Bipper_31

Bipper_32
(lysin A glycosidase domain)

Bipper_33
(lysin A amidase domain)

Bipper_34
(lysin A peptidase domain)

Bipper_35
(lysin B)

Bipper_36
(holin)

Bipper_37

Bipper_38

Bipper_39
(HTH DNA binding protein)

Bipper_40

Bipper_42
(BrnT-like toxin)

Bipper_43

Bipper_44

Bipper_45

Bipper_46

Bipper_47

Bipper_48
(helix-turn-helix DNA binding domain protein)

Bipper_49

Bipper_50
(integrase)

Bipper_51
(immunity repressor)

Bipper_52
(excise)

Bipper_53

Bipper_54
(DnaQ-like exonuclease)

Bipper_55

Bipper_56

Bipper_57

Bipper_58
(WhiB family transcription factor)

Bipper_59

Bipper_60

Bipper_61

Bipper_62
(HNH endonuclease)

Bipper_63
(HTH DNA binding protein)

Bipper_64
(RecE-like exonuclease)

Bipper_65
(RecT-like ssDNA binding protein)

Bipper_66

Bipper_67

Bipper_68

Bipper_69

Bipper_70

Bipper_71

Bipper_72

Bipper_73

Bipper_74

Bipper_75

Bipper_76

Bipper_77

Bipper_78

Bipper_79

Bipper_80
(ACSH domain containing protein)

Bipper_81

Bipper_82
(HNH endonuclease)

Bipper_83

Bipper_84
(HTH DNA binding protein)

Bipper_85

Bipper_86

Bipper_87

Bipper_88
(RuvC-like resolvase)

Bipper_89

Bipper_90
(metallophosphoesterase)

Bipper_91

Bipper_92

Bipper_93

Bipper_94

Bipper_95

Bipper_96

Bipper_97

Bipper_98

Bipper_99

Bipper_100

Bipper_101

Bipper_102

Bipper_103

Bipper_104

Bipper_105

Bipper_106

Bipper_107

Bipper_108

Bipper_109

Bipper_110

Bipper_111

Bipper_112

Bipper_113

Bipper_114

Bipper_115

Bipper_116

Bipper_117

Bipper_118

Bipper_119

Bipper_120

Bipper_121

Bipper_122

Bipper_123

Bipper_124

Bipper_125

Bipper_126

Bipper_127

Bipper_128

Bipper_129

Bipper_130

Bipper_131
(AAA-ATPase)

Bipper_132

Bipper_133

Bipper_134

Bipper_135

Bipper_136
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU728633
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 1
Pitt Freezer Box Grid# C5
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload