Gordonia phage Blueberry
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Detailed Information for Phage Blueberry
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMatthew Montgomery
Year Found2015
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.444800 N, 79.952700 W Map
Naming NotesI was struggling to think of phage names, but I was eating blueberries, so I went with that.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 3, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3867
Genome length (bp)54990
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGGCCGGTGA
End Determination NotesBuildup of reads on either strand with a 10 bp spacer in between.
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesBlueberry does form a lysogen. Lysogen was isolated from a cell "mesa" from the neat spot on a titer plate. Blueberry prevents superinfection in Bachita, ClubL, and Utz.
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Number of Genes86
Has been Phamerated?Yes
Gene List

Click to View

Blueberry_1
(terminase small subunit)

Blueberry_2
(terminase large subunit)

Blueberry_3
(portal protein)

Blueberry_4
(capsid maturation protease)

Blueberry_5
(scaffolding protein)

Blueberry_6
(major capsid protein)

Blueberry_7

Blueberry_8
(head-to-tail adaptor)

Blueberry_9
(head-to-tail stopper)

Blueberry_10

Blueberry_11

Blueberry_12

Blueberry_13

Blueberry_14

Blueberry_15
(tail terminator)

Blueberry_16
(major tail protein)

Blueberry_17
(tail assembly chaperone)

Blueberry_18
(tail assembly chaperone)

Blueberry_19
(tape measure protein)

Blueberry_20
(minor tail protein)

Blueberry_21
(minor tail protein)

Blueberry_22
(lysin A, L-Ala-D-Glu peptidase domain)

Blueberry_23
(lysin A, glycosyl hydrolase domain)

Blueberry_24

Blueberry_25

Blueberry_26

Blueberry_27
(lysin B)

Blueberry_28

Blueberry_29
(minor tail protein)

Blueberry_30
(minor tail protein)

Blueberry_31

Blueberry_32
(minor tail protein)

Blueberry_33

Blueberry_34

Blueberry_35

Blueberry_36

Blueberry_37
(serine integrase)

Blueberry_38
(helix-turn-helix DNA binding protein)

Blueberry_39
(helix-turn-helix DNA binding protein)

Blueberry_40

Blueberry_41
(immunity repressor)

Blueberry_42

Blueberry_43

Blueberry_44
(helix-turn-helix DNA binding protein)

Blueberry_45

Blueberry_46
(antirepressor)

Blueberry_47

Blueberry_48

Blueberry_49

Blueberry_50

Blueberry_51

Blueberry_52

Blueberry_53

Blueberry_54

Blueberry_55

Blueberry_56

Blueberry_57
(DnaQ-like DNA polymerase III subunit)

Blueberry_58
(exonuclease)

Blueberry_59
(RecT-like ssDNA binding protein)

Blueberry_60

Blueberry_61

Blueberry_62

Blueberry_63

Blueberry_64

Blueberry_65

Blueberry_66

Blueberry_67
(nucleotidyltransferase)

Blueberry_68

Blueberry_69

Blueberry_70

Blueberry_71

Blueberry_72
(HNH endonuclease)

Blueberry_73

Blueberry_74

Blueberry_75

Blueberry_76

Blueberry_77

Blueberry_78

Blueberry_79
(RuvC-like resolvase)

Blueberry_80

Blueberry_81

Blueberry_82
(helix-turn-helix DNA binding protein)

Blueberry_83

Blueberry_84
(transposase)

Blueberry_85
(transposase)

Blueberry_86

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU998236
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 4
Pitt Freezer Box Grid# E3
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload