Streptomyces phage Bordeaux
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Detailed Information for Phage Bordeaux
Discovery Information
Isolation HostStreptomyces griseus ATCC 10137
Found ByBrendon Williams
Year Found2018
Location FoundFlower Mound, TX USA
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates33.041985 N, 97.172043 W Map
Discovery NotesThe soil sample was taken August 26th, 2018, at 3:55PM. The soil was largely dry with organic matter such as grass roots and other buried materials such as twigs and acorns, with very few rocks. The air temperature was 96 degrees F. The sample was taken from about 2 feet away from a tree, and consisted of dark and clumpy soil.
Naming NotesThe name Bordeaux comes from the street it was taken from, and also where I grew up. It reflects the temperate nature of the phage as just like the French wine town the street shares its name with, the phage took its time to reach a viable titer.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage700
Genome length (bp)131317
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length12579 bp
GC Content49.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE2
Cluster Life CycleLytic
Lysogeny NotesA spot test testing for lysogens had clear spots down to the 10^-7 dilution, lending evidence to a possibly negative conclusion.
Other Cluster Members
Annotating InstitutionUniversity of North Texas
Annotation StatusIn GenBank
Plaque NotesPlaques were typically very small and cloudy. They were typically an average of about 2 mm across.
Has been Phamerated?Yes
Gene List

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Bordeaux_1

Bordeaux_2

Bordeaux_3

Bordeaux_4

Bordeaux_5

Bordeaux_6

Bordeaux_7
(Lsr2-like DNA bridging protein)

Bordeaux_8

Bordeaux_9

Bordeaux_10

Bordeaux_11

Bordeaux_12

Bordeaux_13
(ParB-like nuclease domain)

Bordeaux_14

Bordeaux_15

Bordeaux_16

Bordeaux_17

Bordeaux_18

Bordeaux_19

Bordeaux_20

Bordeaux_21

Bordeaux_22

Bordeaux_23

Bordeaux_24

Bordeaux_25

Bordeaux_26
(HNH endonuclease)

Bordeaux_27

Bordeaux_28
(ThyX-like thymidylate synthase)

Bordeaux_29

Bordeaux_30

Bordeaux_31

Bordeaux_32

Bordeaux_33

Bordeaux_34

Bordeaux_35
(membrane protein)

Bordeaux_36

Bordeaux_38
(HNH endonuclease)

Bordeaux_39
(hydrolase)

Bordeaux_40

Bordeaux_41

Bordeaux_42
(glycosyltransferase)

Bordeaux_43
(ribonucleotide reductase)

Bordeaux_44
(endolysin, LysM-like)

Bordeaux_45

Bordeaux_46

Bordeaux_47
(portal protein)

Bordeaux_48
(membrane protein)

Bordeaux_49
(capsid maturation protease)

Bordeaux_50
(major capsid protein)

Bordeaux_51

Bordeaux_52

Bordeaux_53

Bordeaux_54

Bordeaux_55

Bordeaux_56
(major tail protein)

Bordeaux_57
(tail assembly chaperone)

Bordeaux_58

Bordeaux_59
(tape measure protein)

Bordeaux_60
(minor tail protein)

Bordeaux_61
(minor tail protein)

Bordeaux_62

Bordeaux_63
(minor tail protein)

Bordeaux_64
(minor tail protein)

Bordeaux_65

Bordeaux_66

Bordeaux_67

Bordeaux_68
(HNH endonuclease)

Bordeaux_69
(metallophosphoesterase)

Bordeaux_70
(holin)

Bordeaux_71

Bordeaux_72

Bordeaux_73

Bordeaux_74

Bordeaux_75

Bordeaux_76
(DnaB-like dsDNA helicase)

Bordeaux_77

Bordeaux_78
(DNA primase)

Bordeaux_79
(ssDNA binding protein)

Bordeaux_80
(DnaE-like DNA polymerase III (alpha))

Bordeaux_81

Bordeaux_82
(MazG-like nucleotide pyrophosphohydrolase)

Bordeaux_83
(RecA-like DNA Recombinase)

Bordeaux_84

Bordeaux_85

Bordeaux_86

Bordeaux_87

Bordeaux_88

Bordeaux_89
(exonuclease)

Bordeaux_90

Bordeaux_91
(RuvC-like resolvase)

Bordeaux_92
(DprA-like DNA processing chain A)

Bordeaux_93

Bordeaux_94
(methyltransferase)

Bordeaux_95
(thymidylate kinase)

Bordeaux_96

Bordeaux_97

Bordeaux_98
(terminase)

Bordeaux_99
(HNH endonuclease)

Bordeaux_100

Bordeaux_104

Bordeaux_105

Bordeaux_108
(nucleotidyl transferase)

Bordeaux_109
(FtsK-like DNA translocase)

Bordeaux_110

Bordeaux_112

Bordeaux_114

Bordeaux_115

Bordeaux_117

Bordeaux_119

Bordeaux_120

Bordeaux_121

Bordeaux_122

Bordeaux_123

Bordeaux_125

Bordeaux_126

Bordeaux_128

Bordeaux_129
(Ro-like RNA binding protein)

Bordeaux_130

Bordeaux_131

Bordeaux_132

Bordeaux_133

Bordeaux_134

Bordeaux_135

Bordeaux_136

Bordeaux_137

Bordeaux_138

Bordeaux_139

Bordeaux_141

Bordeaux_149

Bordeaux_150

Bordeaux_151

Bordeaux_154
(HNH endonuclease)

Bordeaux_155
(peptidase)

Bordeaux_156

Bordeaux_158

Bordeaux_159

Bordeaux_161
(membrane protein, Band-7 -like)

Bordeaux_162

Bordeaux_163

Bordeaux_168

Bordeaux_170

Bordeaux_172

Bordeaux_175

Bordeaux_176

Bordeaux_180

Bordeaux_181

Bordeaux_182

Bordeaux_186

Bordeaux_188

Bordeaux_189
(exonuclease)

Bordeaux_190

Bordeaux_192

Bordeaux_193

Bordeaux_194
(acetyltransferase)

Bordeaux_195

Bordeaux_196

Bordeaux_197

Bordeaux_198

Bordeaux_199

Bordeaux_200

Bordeaux_201

Bordeaux_202
(RNA ligase)

Bordeaux_203

Bordeaux_204

Bordeaux_205

Bordeaux_206
(polynucleotide kinase)

Bordeaux_207

Bordeaux_208

Bordeaux_209

Bordeaux_211

Bordeaux_212

Bordeaux_214
(SprT-like protease)

Bordeaux_215

Bordeaux_216

Bordeaux_217

Bordeaux_219

Bordeaux_221

Bordeaux_222

Bordeaux_223

Bordeaux_224

Bordeaux_225

Bordeaux_226

Bordeaux_227

Bordeaux_228

Bordeaux_229
(deoxycytidylate deaminase)

Bordeaux_230
(phosphoesterase)

Bordeaux_231

Bordeaux_232

Bordeaux_233
(WhiB family transcription factor)

Bordeaux_234

Bordeaux_235

Bordeaux_236

Bordeaux_237

Bordeaux_238
(membrane protein)

Bordeaux_239

Bordeaux_240

Bordeaux_241

Bordeaux_242

Bordeaux_244

Bordeaux_245

Bordeaux_246

Bordeaux_247

Bordeaux_248

Bordeaux_249

Bordeaux_250
(thioredoxin)

Bordeaux_251

Bordeaux_252
(glycosylase)

Bordeaux_253

Bordeaux_254

Bordeaux_255

Bordeaux_256

Bordeaux_257

Bordeaux_258

Bordeaux_259

Bordeaux_260

Bordeaux_261

Bordeaux_262

Bordeaux_263

Bordeaux_264
(Lsr2-like DNA bridging protein)

Bordeaux_265

Bordeaux_266

Bordeaux_267

Bordeaux_268

Bordeaux_269

Bordeaux_270
(ParB-like nuclease domain)

Bordeaux_271

Bordeaux_272

Bordeaux_273

Bordeaux_274

Bordeaux_275

Bordeaux_276

Bordeaux_277

Bordeaux_278

Bordeaux_279

Bordeaux_280

Bordeaux_281

Bordeaux_282

Bordeaux_283
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN369757
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4•10^7
Pitt Freezer Box# 75
Pitt Freezer Box Grid# A9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload