Gordonia phage CaiB
CaiB Plaque Picture
CaiB EM Picture
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(G. terrae 3612)
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Detailed Information for Phage CaiB
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByBienna Welsh, Dr. Richard Pollenz
Year Found2021
Location FoundTampa, FL United States of America
Finding InstitutionUniversity of South Florida
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature29°C
GPS Coordinates28.086388 N, 82.384166 W Map
Discovery NotesI had to adopt a phage from my professor whose name is Dr. Richard Pollenz.
Naming NotesPronounced: Cai-B. The first three letters are the beginning of my brother's name and the last letter is the initial of my first name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 28, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage591
Genome length (bp)61620
Character of genome endsCircularly Permuted
GC Content68.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members

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AnarQue

AnClar

Axumite

BiggityBass

CaiB

CharlottesWeb

CloverMinnie

Evaa

Fresco

Ligma

LittleMunchkin

MakoManhole

Mariokart

MossRose

NHagos

Shatter

Sisko

Sour

Wooper

Yago84
Annotating InstitutionUniversity of South Florida
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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CaiB_1
(ParB-like nuclease domain protein)

CaiB_2
(oxidoreductase)

CaiB_3

CaiB_4
(adenylate kinase)

CaiB_5
(oxidoreductase)

CaiB_6
(terminase)

CaiB_7

CaiB_8
(RuvC-like resolvase)

CaiB_9

CaiB_10
(portal protein)

CaiB_11

CaiB_12

CaiB_13
(major capsid hexamer protein)

CaiB_14
(major capsid pentamer protein)

CaiB_15

CaiB_16

CaiB_17

CaiB_18

CaiB_19

CaiB_20
(major tail protein)

CaiB_21
(head-to-tail adaptor)

CaiB_22

CaiB_23

CaiB_24

CaiB_25

CaiB_26
(tape measure protein)

CaiB_27
(minor tail protein)

CaiB_28
(minor tail)

CaiB_29
(minor tail)

CaiB_30

CaiB_31

CaiB_32

CaiB_33

CaiB_34

CaiB_35

CaiB_36

CaiB_37
(glycoside hydrolase)

CaiB_38

CaiB_39

CaiB_40
(DNA binding protein)

CaiB_41
(helix-turn-helix DNA binding domain protein)

CaiB_42

CaiB_43
(lysin A, L-Ala-D-Glu peptidase domain)

CaiB_44
(lysin A, glycosyl hydrolase domain)

CaiB_45
(lysin B)

CaiB_46

CaiB_47
(exonuclease)

CaiB_48
(ParB-like nuclease domain protein)

CaiB_49
(DNA helicase)

CaiB_50

CaiB_51

CaiB_52
(DNA primase/polymerase/helicase)

CaiB_53

CaiB_54
(DNA polymerase I)

CaiB_55

CaiB_56

CaiB_57

CaiB_58

CaiB_59

CaiB_60

CaiB_61

CaiB_62
(ribbon-helix-helix DNA binding domain protein)

CaiB_63

CaiB_64

CaiB_65
(helix-turn-helix DNA binding domain protein)

CaiB_66

CaiB_67

CaiB_68

CaiB_69

CaiB_70

CaiB_71

CaiB_72

CaiB_73
(DNA binding protein)

CaiB_74

CaiB_75

CaiB_76

CaiB_77

CaiB_78
(HNH endonuclease)

CaiB_79

CaiB_80

CaiB_81

CaiB_82

CaiB_83

CaiB_84

CaiB_85
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON108644
Refseq NumberNone yet
Published in PaperWelsh et al 2022, Microbiology Resource Announcements: Genome Sequence of CaiB, a DR Cluster Actinobacteriophage That Infects Gordonia rubripertincta
Archiving Info
Archiving status Archived
Pitt Freezer Box# 132
Pitt Freezer Box Grid# D12
Available Files
GenBank File for PhameratorDownload