Microbacterium phage Cece
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Detailed Information for Phage Cece
Discovery Information
Isolation HostMicrobacterium radiodurans NRRL B-24799
Found ByCecilia Humphrey
Year Found2019
Location FoundNyack, NY United States of America
Finding InstitutionAlliance University (formerly Nyack College)
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature28°C
GPS Coordinates41.088286 N, 73.93102 W Map
Discovery NotesFound on September 30th 2019. The temperature was 67 Fahrenheit, with 56% humidity. The time was 1:18pm. The soil sample was collected outside of the science building underneath a bush. The soil was slightly damp.
Naming NotesI've named it Cece after myself.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 6, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage75
Genome length (bp)186513
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length18079 bp
GC Content59.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterGD
SubclusterGD3
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionAlliance University (formerly Nyack College)
Annotation StatusIn GenBank
Plaque NotesThe phages are very tiny..pinpoint in size and temperature sensitive. At 25 degrees they are slightly larger.
Has been Phamerated?Yes
Gene List

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Cece_1
(terminase small subunit)

Cece_2

Cece_3

Cece_4

Cece_5

Cece_6
(helix-turn-helix DNA binding domain protein)

Cece_7
(endolysin)

Cece_8

Cece_9

Cece_10

Cece_11

Cece_12

Cece_13

Cece_14

Cece_15

Cece_16

Cece_17

Cece_18

Cece_19
(SprT-like protease)

Cece_20

Cece_21

Cece_22
(glycosylase)

Cece_23

Cece_24

Cece_25

Cece_26

Cece_27
(Lsr2-like DNA bridging protein)

Cece_28

Cece_29

Cece_30

Cece_31

Cece_32

Cece_33

Cece_34

Cece_35

Cece_36
(hydrolase)

Cece_37

Cece_38

Cece_39

Cece_40

Cece_41

Cece_42

Cece_43

Cece_44

Cece_45
(helix-turn-helix DNA binding domain protein)

Cece_46

Cece_47

Cece_48

Cece_49

Cece_50

Cece_51

Cece_52

Cece_53

Cece_54

Cece_55

Cece_56

Cece_57

Cece_58

Cece_59
(terminase large subunit)

Cece_60
(helix-turn-helix DNA binding domain protein)

Cece_61

Cece_62

Cece_63
(terminase large subunit, nuclease domain)

Cece_64
(terminase large subunit, ATPase domain)

Cece_65

Cece_66
(portal protein)

Cece_67

Cece_68

Cece_69

Cece_70
(capsid maturation protease)

Cece_71
(major capsid hexamer protein)

Cece_72

Cece_73
(major tail protein)

Cece_74
(head-to-tail adaptor)

Cece_75

Cece_76

Cece_77

Cece_78
(tail assembly chaperone)

Cece_79

Cece_80
(tape measure protein)

Cece_81
(minor tail protein)

Cece_82
(minor tail protein)

Cece_83
(minor tail protein)

Cece_84
(minor tail protein)

Cece_85
(minor tail protein)

Cece_86

Cece_87
(DNA primase/polymerase/helicase)

Cece_88

Cece_89

Cece_90
(DnaQ-like DNA polymerase III subunit)

Cece_91
(WhiB family transcription factor)

Cece_92

Cece_93

Cece_94

Cece_95
(RecA-like DNA recombinase)

Cece_96
(RecB-like exonuclease/helicase)

Cece_97
(DNA helicase)

Cece_98
(RuvC-like resolvase)

Cece_99
(DNA polymerase I)

Cece_100

Cece_117
(peptidyl tRNA hydrolase)

Cece_118

Cece_119

Cece_120
(MazG-like nucleotide pyrophosphohydrolase)

Cece_121
(ThyX-like thymidylate synthase)

Cece_122

Cece_123

Cece_124

Cece_135

Cece_137
(HNH endonuclease)

Cece_139

Cece_147

Cece_152

Cece_153
(RNA ligase)

Cece_154

Cece_155

Cece_156

Cece_157

Cece_158
(ADP-ribosylglycohydrolase)

Cece_159

Cece_160

Cece_161
(RtcB-like RNA ligase)

Cece_162

Cece_163

Cece_167

Cece_168

Cece_169

Cece_170
(endolysin)

Cece_174
(band-7-like membrane protein)

Cece_175

Cece_176
(Ro-like RNA binding protein)

Cece_177

Cece_178

Cece_179
(DNA helicase)

Cece_180

Cece_181

Cece_182

Cece_183

Cece_184

Cece_185

Cece_186

Cece_187
(HNH endonuclease)

Cece_188

Cece_189
(ribonucleotide reductase)

Cece_190

Cece_191

Cece_192

Cece_193
(ribonucleotide reductase)

Cece_194
(NrdI-like flavodoxin)

Cece_195
(NrdH-like glutaredoxin)

Cece_196

Cece_197

Cece_198
(DNA binding protein)

Cece_199

Cece_200

Cece_201
(nucleotidyl transferase)

Cece_202
(RNA ligase)

Cece_203
(metallophosphoesterase)

Cece_204

Cece_205
(metallophosphoesterase)

Cece_206
(phosphatase)

Cece_207

Cece_208
(5' nucleotidase)

Cece_209
(deoxynucleoside monophosphate kinase)

Cece_210

Cece_211

Cece_212
(AAA-ATPase)

Cece_213
(rIIA-like protein)

Cece_214
(rIIB-like protein)

Cece_215

Cece_216

Cece_217
(DprA-like DNA processing chain A)

Cece_218

Cece_219

Cece_220
(phosphoribosyl pyrophosphate transferase)

Cece_221

Cece_222

Cece_223

Cece_224
(nicotinate ribosyltransferase)

Cece_225

Cece_226

Cece_227

Cece_228

Cece_229

Cece_230
(PnuC-like nicotinamide riboside transporter)

Cece_231

Cece_232

Cece_233

Cece_234
(adenylyltransferase)

Cece_235

Cece_236
(SpoT-like ppGpp synthesis/degradation protein)

Cece_237
(tRNA nucleotidyltransferase)

Cece_238

Cece_239

Cece_240

Cece_241

Cece_242
(glycosylase)

Cece_243

Cece_244

Cece_245

Cece_246

Cece_247
(exonuclease)

Cece_248

Cece_249

Cece_250

Cece_251

Cece_252

Cece_253

Cece_254

Cece_255

Cece_256
(DnaQ-like DNA polymerase III subunit)

Cece_257

Cece_258

Cece_259

Cece_260

Cece_261

Cece_262

Cece_263

Cece_264

Cece_265

Cece_266

Cece_267

Cece_268

Cece_269

Cece_270

Cece_271

Cece_272

Cece_273

Cece_274

Cece_275

Cece_276

Cece_277

Cece_278

Cece_279

Cece_280

Cece_281

Cece_282

Cece_283

Cece_284

Cece_285

Cece_286

Cece_287

Cece_288

Cece_289

Cece_290

Cece_291

Cece_292

Cece_293

Cece_294
(AAA-ATPase)

Cece_295

Cece_296
(AAA-ATPase)

Cece_297

Cece_298

Cece_299

Cece_300

Cece_301

Cece_302

Cece_303

Cece_304
(terminase small subunit)

Cece_305

Cece_306

Cece_307

Cece_308
(helix-turn-helix DNA binding domain protein)

Cece_309
(endolysin)

Cece_310

Cece_311

Cece_312

Cece_313

Cece_314

Cece_315

Cece_316

Cece_317

Cece_318

Cece_319

Cece_320

Cece_321
(SprT-like protease)

Cece_322

Cece_323

Cece_324
(glycosylase)

Cece_325

Cece_326

Cece_327

Cece_328

Cece_329
(Lsr2-like DNA bridging protein)

Cece_330

Cece_331

Cece_332

Cece_333

Cece_334

Cece_335

Cece_336

Cece_337

Cece_338
(hydrolase)

Cece_339

Cece_340

Cece_341

Cece_342

Cece_343

Cece_344

Cece_345

Cece_346

Cece_347
(helix-turn-helix DNA binding domain protein)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP068343
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 97
Pitt Freezer Box Grid# B6
Available Files
EM PictureDownload
GenBank File for PhameratorDownload