Gordonia phage Chikenjars
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Detailed Information for Phage Chikenjars
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJane Frank, Sarah Hoagland, Nicholas Lee
Year Found2018
Location FoundLincoln, NE USA
Finding InstitutionUniversity of Nebraska-Lincoln
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature25°C
GPS Coordinates40.828025 N, 96.693583 W Map
Discovery NotesCollected at the Holdrege trail lot, just outside the University of Nebraska-Lincoln campus. Surface soil was collected for the sample.
Naming NotesThe name includes all the letters of the names: Sarah, Jane, & Nick; these are the names of the students working with the phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 3, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage735
Genome length (bp)61544
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGCTCT
GC Content51.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDJ
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Nebraska-Lincoln
Annotation StatusIn GenBank
Plaque NotesPlaques are turbid, with a radius of 0.85mm. Areas of turbidity and cloudiness often are much larger than areas of central clearing.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Chikenjars_1

Chikenjars_2

Chikenjars_3
(hydrolase)

Chikenjars_4

Chikenjars_5

Chikenjars_6

Chikenjars_7

Chikenjars_8

Chikenjars_9

Chikenjars_10
(hydrolase)

Chikenjars_11

Chikenjars_12
(HNH endonuclease)

Chikenjars_13
(lysin A)

Chikenjars_14
(holin)

Chikenjars_15

Chikenjars_16

Chikenjars_17
(terminase)

Chikenjars_18

Chikenjars_19

Chikenjars_20
(portal protein)

Chikenjars_21

Chikenjars_22
(major capsid and protease fusion protein)

Chikenjars_23

Chikenjars_24

Chikenjars_25
(major tail protein)

Chikenjars_26

Chikenjars_27
(major tail protein)

Chikenjars_28

Chikenjars_29

Chikenjars_30
(lysin B)

Chikenjars_31

Chikenjars_32
(tape measure protein)

Chikenjars_33
(minor tail protein)

Chikenjars_34
(minor tail protein)

Chikenjars_35

Chikenjars_36

Chikenjars_37

Chikenjars_38

Chikenjars_39

Chikenjars_40

Chikenjars_41

Chikenjars_42

Chikenjars_43

Chikenjars_44

Chikenjars_45

Chikenjars_46

Chikenjars_47

Chikenjars_48

Chikenjars_49

Chikenjars_50

Chikenjars_51

Chikenjars_52

Chikenjars_53

Chikenjars_54

Chikenjars_55

Chikenjars_56

Chikenjars_57

Chikenjars_58

Chikenjars_59
(DNA primase/polymerase)

Chikenjars_60

Chikenjars_61

Chikenjars_62
(deoxycytidylate deaminase)

Chikenjars_63

Chikenjars_64

Chikenjars_65

Chikenjars_66

Chikenjars_67
(ThyX-like thymidylate synthase)

Chikenjars_68

Chikenjars_69

Chikenjars_70

Chikenjars_71

Chikenjars_72

Chikenjars_73

Chikenjars_74

Chikenjars_75

Chikenjars_76

Chikenjars_77

Chikenjars_78

Chikenjars_79

Chikenjars_80

Chikenjars_81

Chikenjars_82

Chikenjars_83

Chikenjars_84

Chikenjars_85

Chikenjars_86

Chikenjars_87
(DNA helicase)

Chikenjars_88
(HNH endonuclease)

Chikenjars_89
(hydrolase)

Chikenjars_90
(exonuclease)

Chikenjars_91
(helix-turn-helix DNA binding domain protein)

Chikenjars_92

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN204501
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 77
Pitt Freezer Box Grid# G12
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload