Microbacterium phage ClearAsMud
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage ClearAsMud
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByMichael Reeves
Year Found2020
Location FoundLa Sierra, CA USA
Finding InstitutionLa Sierra University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature23°C
GPS Coordinates33.910341 N, 117.495575 W Map
Discovery NotesCollected at 1 pm. Wet soil near water, lots of bugs, worms, decomposing leaves, and mulch. There was no rain on the area in the past 24 hours.
Naming NotesThe soil sample was mud, and the oxymoron clear as mud was used.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage27
Genome length (bp)52987
Character of genome endsCircularly Permuted
GC Content69.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEC
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLa Sierra University
Annotation StatusIn GenBank
Plaque NotesLytic,1mm diameter.
Has been Phamerated?Yes
Gene List

Click to View

ClearAsMud_1
(terminase, small subunit)

ClearAsMud_2

ClearAsMud_3
(terminase, large subunit)

ClearAsMud_4

ClearAsMud_5

ClearAsMud_6

ClearAsMud_7

ClearAsMud_8

ClearAsMud_9

ClearAsMud_10

ClearAsMud_11

ClearAsMud_12

ClearAsMud_13

ClearAsMud_14

ClearAsMud_15

ClearAsMud_16

ClearAsMud_17

ClearAsMud_18

ClearAsMud_19

ClearAsMud_20

ClearAsMud_21

ClearAsMud_22
(Portal Protein)

ClearAsMud_23

ClearAsMud_24

ClearAsMud_25
(MuF-like minor capsid protein)

ClearAsMud_26

ClearAsMud_27
(capsid maturation protease)

ClearAsMud_28

ClearAsMud_29
(major capsid protein)

ClearAsMud_30

ClearAsMud_31

ClearAsMud_32
(major tail protein)

ClearAsMud_33
(head-to-tail adaptor)

ClearAsMud_34

ClearAsMud_35

ClearAsMud_36
(tail assembly chaperone)

ClearAsMud_37
(tail assembly chaperone)

ClearAsMud_38
(tape measure protein)

ClearAsMud_39
(minor tail protein)

ClearAsMud_40
(minor tail protein)

ClearAsMud_41
(minor tail protein)

ClearAsMud_42
(minor tail protein)

ClearAsMud_43

ClearAsMud_44

ClearAsMud_45
(lysin A)

ClearAsMud_46

ClearAsMud_47

ClearAsMud_48

ClearAsMud_49

ClearAsMud_50
(RusA-like resolvase (endonuclease))

ClearAsMud_51
(exonuclease)

ClearAsMud_52
(ssDNA binding protein, ERF family)

ClearAsMud_53

ClearAsMud_54

ClearAsMud_55

ClearAsMud_56

ClearAsMud_57
(HNH endonuclease)

ClearAsMud_58

ClearAsMud_59

ClearAsMud_60

ClearAsMud_61

ClearAsMud_62

ClearAsMud_63
(helix-turn-helix DNA binding domain)

ClearAsMud_64

ClearAsMud_65
(DNA ligase)

ClearAsMud_66

ClearAsMud_67

ClearAsMud_68
(ssDNA binding protein)

ClearAsMud_69

ClearAsMud_70
(helix-turn-helix DNA binding domain)

ClearAsMud_71
(helix-turn-helix DNA binding domain)

ClearAsMud_72

ClearAsMud_73

ClearAsMud_74

ClearAsMud_75

ClearAsMud_76

ClearAsMud_77

ClearAsMud_78

ClearAsMud_79

ClearAsMud_80

ClearAsMud_81

ClearAsMud_82

ClearAsMud_83

ClearAsMud_84

ClearAsMud_85
(RNA polymerase sigma factor)

ClearAsMud_86
(ParB-like nuclease domain)

ClearAsMud_87
(glycosyltransferase)

ClearAsMud_88
(UDP-glucose dehydrogenase)

ClearAsMud_89
(AAA-ATPase)

ClearAsMud_90

ClearAsMud_91

ClearAsMud_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT657336
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload