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Gordonia phage Danyall
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Detailed Information for Phage Danyall
Discovery Information
Isolation HostGordonia terrae 3612
Found ByDanyall Saeed
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.441491 N, 79.957521 W Map
Discovery NotesPhage was discovered in a flowerbed after a rain storm as part of a multiple-phage sample, reinforcing the fact that phages thrive in moist environmental conditions.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 10, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage566
Genome length (bp)58695
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Lysogeny NotesPlaque size did not increase at the rate observed before after steady incubation for about two weeks. This could hint at the phage possibly entering the lysogenic cycle after a certain period of infection and lysis, but this is yet to be determined as a fact.
Other Cluster Members
Annotating InstitutionGettysburg College
Annotation StatusIn GenBank
Plaque NotesSingle, isolated plaque (from dilutions) is observed as 3-5 mm in diameter and a central dark spot (1-2 mm in diameter) containing an even darker spot located in about the exact center of the plaque.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Danyall_1
(HTH DNA-binding protein)

Danyall_2

Danyall_3

Danyall_4

Danyall_5
(terminase)

Danyall_6

Danyall_7

Danyall_8
(helix-turn-helix DNA binding domain protein)

Danyall_9

Danyall_10
(polynucleotide kinase)

Danyall_11

Danyall_12
(portal protein)

Danyall_13

Danyall_14
(capsid morphogenesis protein)

Danyall_15

Danyall_16

Danyall_17

Danyall_18
(capsid maturation protease)

Danyall_19
(RNA ligase)

Danyall_20

Danyall_21
(major capsid protein)

Danyall_22

Danyall_23

Danyall_24
(major tail protein)

Danyall_25
(head-to-tail connector complex protein)

Danyall_26

Danyall_27

Danyall_28

Danyall_29

Danyall_30

Danyall_31
(tape measure protein)

Danyall_32
(minor tail protein)

Danyall_33
(minor tail protein)

Danyall_34

Danyall_35
(minor tail protein)

Danyall_36

Danyall_37

Danyall_38
(minor tail protein)

Danyall_39

Danyall_40

Danyall_41
(lysin A)

Danyall_42
(holin)

Danyall_43

Danyall_44

Danyall_45

Danyall_46
(lysin B)

Danyall_47
(integrase)

Danyall_48

Danyall_49
(integrase)

Danyall_50
(immunity repressor)

Danyall_51
(HTH DNA binding domain protein)

Danyall_52

Danyall_53

Danyall_54

Danyall_55
(exonuclease)

Danyall_56

Danyall_57

Danyall_58

Danyall_59

Danyall_60
(DNA methylase)

Danyall_61

Danyall_62

Danyall_63

Danyall_64
(resolvase)

Danyall_65

Danyall_66

Danyall_67

Danyall_68

Danyall_69

Danyall_70

Danyall_71

Danyall_72
(histidine triad nucleotide binding protein)

Danyall_73
(nicotinamide riboside transporter)

Danyall_74

Danyall_75

Danyall_76

Danyall_77

Danyall_78

Danyall_79

Danyall_80

Danyall_81

Danyall_82
(DNA methylase)

Danyall_83

Danyall_84

Danyall_85
(DnaJ-like chaperonin)

Danyall_86

Danyall_87

Danyall_88

Danyall_89

Danyall_90

Danyall_91

Danyall_92

Danyall_93

Danyall_94

Danyall_95

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH479910
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.67 x 10^10 pfu/mL
Date of SEA Lysate Titering Oct 28, 2016
Pitt Freezer Box# 43
Pitt Freezer Box Grid# A7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload