Gordonia phage Dexdert
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Dexdert
Discovery Information
Isolation HostGordonia terrae 3612
Found ByKyle Timmer
Year Found2016
Location FoundGrandville, MI USA
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.896563 N, 85.750597 W Map
Discovery NotesSoil was collected from under a pool deck. The soil was somewhat damp, relatively uniform, and contained some pieces of dead vegetation initially.
Naming NotesThe name is a mix of the words "Deck's Dirt," which is where the phage was isolated from (dirt underneath a pool deck)
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 1, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage357
Genome length (bp)55006
Character of genome endsCircularly Permuted
GC Content67.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Louisiana at Monroe
Annotation StatusIn GenBank
Plaque NotesPlaques started out very cloudy and hard to spot, but as time went on and more purifications were performed, it became more clear. Normal plaque size tended to be around 1-2 millimeters.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Dexdert_1
(terminase small subunit)

Dexdert_2
(terminase large subunit)

Dexdert_3

Dexdert_4

Dexdert_5

Dexdert_6

Dexdert_7

Dexdert_8

Dexdert_9

Dexdert_10

Dexdert_11

Dexdert_12
(lipoprotein)

Dexdert_13

Dexdert_14
(portal protein)

Dexdert_15

Dexdert_16
(MuF-like minor capsid protein)

Dexdert_17

Dexdert_18
(RNA ligase)

Dexdert_19

Dexdert_20

Dexdert_21
(major capsid hexamer protein)

Dexdert_22

Dexdert_23

Dexdert_24

Dexdert_25
(head-to-tail adaptor)

Dexdert_26

Dexdert_27

Dexdert_28

Dexdert_29
(tail assembly chaperone)

Dexdert_30
(tail assembly chaperone)

Dexdert_31
(tail measure protein)

Dexdert_32
(minor tail protein)

Dexdert_33
(minor tail protein)

Dexdert_34
(minor tail protein)

Dexdert_35
(minor tail protein)

Dexdert_36

Dexdert_37
(minor tail protein)

Dexdert_38

Dexdert_39
(lysin A)

Dexdert_40
(holin)

Dexdert_41

Dexdert_42

Dexdert_43

Dexdert_44

Dexdert_45

Dexdert_46
(RecE-like exonuclease)

Dexdert_47

Dexdert_48
(RecT-like ssDNA binding protein)

Dexdert_49

Dexdert_50

Dexdert_51
(helix-turn-helix DNA binding domain protein)

Dexdert_52
(helix-turn-helix DNA binding domain protein)

Dexdert_53

Dexdert_54

Dexdert_55

Dexdert_56

Dexdert_57

Dexdert_58
(lysin B)

Dexdert_59

Dexdert_60

Dexdert_61

Dexdert_62

Dexdert_63
(RuvC-like resolvase)

Dexdert_64

Dexdert_65

Dexdert_66

Dexdert_67

Dexdert_68

Dexdert_69

Dexdert_70

Dexdert_71

Dexdert_72

Dexdert_73

Dexdert_74
(DnaQ-like DNA polymerase III subunit)

Dexdert_75
(MazG-like nucleotide pyrophosphohydrolase)

Dexdert_76

Dexdert_77

Dexdert_78

Dexdert_79

Dexdert_80

Dexdert_81

Dexdert_82
(helix-turn-helix DNA binding domain protein)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW314849
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.01*10^9
Date of SEA Lysate Titering Nov 30, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# A2
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload