| Detailed Information for Phage Dori |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Erica Shepard |
| Year Found | 2008 |
| Location Found | Santa Cruz, CA USA |
| Finding Institution | University of California, Santa Cruz |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 36.991383 N, 122.060867 W Map |
| Discovery Notes | Soil
type: scum off bottom of fishpond
depth: 1 cm
temp: 73°F/23°C
environment: no/very little shade, underwater, fish present in water, near other water plants |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 11, 2011 |
| Genome length (bp) | 64613 |
| Character of genome ends | Circularly Permuted |
| GC Content | 66.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | AD |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques were very small at first (pinpoint). They became larger (opaque) with other possible opaque plaques in the background. Opaque plaques in the background were picked and plated. The plaques were all opaque. After the lysate was sitting around for one month it was plated and some clear pinpoint plaques appeared among other opaque plaques. |
| Morphotype | Siphoviridae |
| Number of Genes | 93 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN698995 |
| Refseq Number | NC_023703 |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2008 Dori UCSC |
| SEA Lysate Titer |
8x10^8 |
| Pitt Freezer Box# |
1 |
| Pitt Freezer Box Grid# |
F7 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |