The Actinobacteriophage Database

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Detailed Information for Phage Duke13
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Alexander Waldherr
Year Found	2012
Location Found	Elmhurst, IL USA
Finding Institution	York Community High School
Program	Phage Hunters Integrating Research and Education
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	41.866669 N, 87.951389 W Map
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	May 7, 2013
Sequencing Facility	University of Pennsylvania DNA Sequencing Facility
Shotgun Sequencing Method	454 Pyrosequencing
Approximate Shotgun Coverage	149
Genome length (bp)	111970
Character of genome ends	3' Sticky Overhang
Overhang Length	4 bases
Overhang Sequence	ATCC
GC Content	60.7%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	J
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Ariel BAKA Beem Bobby Bombitas Constella Courthouse Dallas DmpstrDiver Dove Duke13 Ejimix EricMillard Halley Hannaconda HokkenD Hughesyang JuicyJay Kalah2 KashFlow Klein LittleE Lucky2013 MiaZeal Minerva NihilNomen Odette Omega Optimus Phoebus Porcelain Pound Redno2 Schatzie Squint Superphikiman Thibault ThreeRngTarjay Wanda Yeet Zelink
Annotating Institution	University of Pittsburgh
Annotation Status	In GenBank
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View Duke13_1 (HNH endonuclease) Duke13_2 (terminase) Duke13_3 Duke13_4 (HNH endonuclease) Duke13_5 Duke13_6 (terminase large subunit) Duke13_7 Duke13_8 (portal protein) Duke13_9 (capsid maturation protease) Duke13_10 (major capsid protein) Duke13_11 (glycosyltransferase) Duke13_12 (serine/threonine kinase) Duke13_13 (methyltransferase) Duke13_14 (glycosyltransferase) Duke13_15 Duke13_16 (glycosyltransferase) Duke13_17 Duke13_18 Duke13_19 Duke13_20 Duke13_21 Duke13_22 (head-to-tail adaptor) Duke13_23 (head-to-tail stopper) Duke13_24 Duke13_25 (tail terminator) Duke13_26 Duke13_27 Duke13_28 (major tail protein) Duke13_29 (tail assembly chaperone) Duke13_30 (tail assembly chaperone) Duke13_31 (tape measure protein) Duke13_32 (minor tail protein) Duke13_33 (minor tail protein) Duke13_34 (minor tail protein) Duke13_35 (minor tail protein) Duke13_36 (minor tail protein) Duke13_37 (minor tail protein) Duke13_38 (minor tail protein) Duke13_39 Duke13_40 Duke13_41 Duke13_42 Duke13_43 Duke13_44 Duke13_45 Duke13_46 Duke13_47 Duke13_48 Duke13_49 Duke13_50 (lysin A) Duke13_51 Duke13_52 (lysin B) Duke13_53 Duke13_54 Duke13_55 (thioredoxin) Duke13_56 Duke13_57 Duke13_58 Duke13_59 Duke13_60 Duke13_61 Duke13_62 (Lsr2-like DNA bridging protein) Duke13_63 Duke13_64 Duke13_65 Duke13_66 Duke13_67 Duke13_68 Duke13_69 Duke13_70 Duke13_71 Duke13_72 Duke13_73 Duke13_74 Duke13_75 Duke13_76 Duke13_77 Duke13_78 Duke13_79 Duke13_80 Duke13_81 Duke13_82 Duke13_83 Duke13_84 Duke13_85 (tyrosine integrase) Duke13_86 Duke13_87 Duke13_88 Duke13_89 Duke13_90 Duke13_91 Duke13_92 Duke13_93 Duke13_94 Duke13_95 Duke13_96 Duke13_97 (esterase) Duke13_98 Duke13_99 Duke13_100 Duke13_101 Duke13_102 Duke13_103 Duke13_104 Duke13_105 Duke13_106 Duke13_107 Duke13_108 Duke13_109 Duke13_110 Duke13_111 Duke13_112 Duke13_113 (RecB-like exonuclease) Duke13_114 Duke13_115 Duke13_116 (DNA methyltransferase) Duke13_117 (HNH endonuclease) Duke13_118 Duke13_119 Duke13_120 Duke13_121 Duke13_122 Duke13_123 (polynucleotide kinase) Duke13_124 Duke13_125 (endonuclease VII) Duke13_126 (WhiB family transcription factor) Duke13_127 Duke13_128 Duke13_129 Duke13_130 Duke13_131 Duke13_132 (DNA primase/polymerase) Duke13_133 Duke13_134 Duke13_135 Duke13_136 Duke13_137 Duke13_138 Duke13_139 Duke13_140 (helix-turn-helix DNA binding protein) Duke13_141 Duke13_142 Duke13_143 Duke13_144 Duke13_145 (helix-turn-helix DNA binding protein) Duke13_146 Duke13_147 (DNA methylase) Duke13_148 Duke13_149 Duke13_150 Duke13_151 (HNH endonuclease) Duke13_152 Duke13_153 Duke13_154 Duke13_155 (RNA ligase) Duke13_156 (ClpP-like protease) Duke13_157 (DnaQ-like DNA polymerase III subunit) Duke13_158 Duke13_159 Duke13_160 Duke13_161 Duke13_162 Duke13_163 Duke13_164 Duke13_165 Duke13_166 (PAPS reductase-like protein) Duke13_167 (nucleotide pyrophosphohydrolase) Duke13_168 Duke13_169 Duke13_170 (metallophosphoesterase) Duke13_171 Duke13_172 Duke13_173 Duke13_174 Duke13_175 Duke13_176 Duke13_177 Duke13_178 (metallophosphoesterase) Duke13_179 Duke13_180 Duke13_181 Duke13_182 Duke13_183 Duke13_184 Duke13_186 Duke13_187 Duke13_188 (histidine triad nucleotide binding protein) Duke13_189 Duke13_190 Duke13_191 Duke13_192 Duke13_193 Duke13_194 Duke13_195 Duke13_196 Duke13_197 Duke13_198 Duke13_199 (FtsK-like DNA translocase) Duke13_200 Duke13_201 Duke13_202 (Ku-like dsDNA break-binding protein) Duke13_203 Duke13_204 Duke13_205 Duke13_206 Duke13_207 Duke13_208 Duke13_209 Duke13_210 Duke13_211 Duke13_212 Duke13_213 Duke13_214 Duke13_215 Duke13_216 Duke13_217 Duke13_218 Duke13_219 Duke13_220 Duke13_221 Duke13_222 Duke13_223 Duke13_224 Duke13_225 Duke13_226 Duke13_227 Duke13_228 Duke13_229 Duke13_230 Duke13_231 Duke13_232 Duke13_233 Duke13_234 Duke13_235 Duke13_236 Duke13_237 Duke13_238 Duke13_239 Duke13_240
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MK279849
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	3
Pitt Freezer Box Grid#	F8
Available Files
Final DNAMaster File	Download
GenBank File for Phamerator	Download

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