Gordonia phage Frokostdame
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Detailed Information for Phage Frokostdame
Discovery Information
Isolation HostGordonia terrae CAG3
Former namesElouise
Found ByUMF Phage Hunters
Year Found2017
Location FoundFarmington, ME USA
Finding InstitutionUniversity of Maine, Farmington
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates44.654722 N, 70.139444 W Map
Discovery NotesIsolated from wastewater that had been through primary treatment but not secondary treatment.
Naming NotesThis phage was first named after the wonderfully warm, kind cafeteria lady that greats us with a friendly smile as we enter the dining hall. Because it sounded like "Eloise", a previously found phage, the name was changed to Frokostdame, which is Danish for lunch lady.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1384
Genome length (bp)52531
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGGCCGGTGA
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Maine, Farmington
Annotation StatusIn GenBank
Plaque NotesPlaques are small and roundish.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Frokostdame_1
(terminase small subunit)

Frokostdame_2
(terminase large subunit)

Frokostdame_3
(portal protein)

Frokostdame_4
(capsid maturation protease)

Frokostdame_5
(scaffolding protein)

Frokostdame_6
(major capsid protein)

Frokostdame_7

Frokostdame_8
(head-to-tail connector complex protein)

Frokostdame_9

Frokostdame_10

Frokostdame_11

Frokostdame_12

Frokostdame_13
(head-to-tail connector complex protein)

Frokostdame_14
(major tail protein)

Frokostdame_15
(tail assembly chaperone)

Frokostdame_16
(tail assembly chaperone)

Frokostdame_17
(tape measure protein)

Frokostdame_18
(minor tail protein)

Frokostdame_19
(minor tail protein)

Frokostdame_20
(lysin A, L-Ala-D-Glu peptidase domain)

Frokostdame_21
(lysin A, glycosyl hydrolase domain)

Frokostdame_22
(holin)

Frokostdame_23
(membrane protein)

Frokostdame_24
(membrane protein)

Frokostdame_25
(lysin B)

Frokostdame_26

Frokostdame_27
(minor tail protein)

Frokostdame_28
(minor tail protein)

Frokostdame_29

Frokostdame_30
(minor tail protein)

Frokostdame_31

Frokostdame_32

Frokostdame_33

Frokostdame_34

Frokostdame_35

Frokostdame_36
(RelB-like antitoxin)

Frokostdame_37
(RelE-like toxin)

Frokostdame_38

Frokostdame_39
(integrase)

Frokostdame_40
(helix-turn-helix DNA binding domain protein)

Frokostdame_41
(peptidase)

Frokostdame_42

Frokostdame_43

Frokostdame_44
(immunity repressor)

Frokostdame_45
(helix-turn-helix DNA binding domain protein)

Frokostdame_46

Frokostdame_47
(antirepressor)

Frokostdame_48

Frokostdame_49

Frokostdame_50

Frokostdame_51

Frokostdame_52

Frokostdame_53

Frokostdame_54

Frokostdame_55

Frokostdame_56

Frokostdame_57
(exonuclease)

Frokostdame_58

Frokostdame_59
(RecT-like ssDNA binding protein)

Frokostdame_60

Frokostdame_61

Frokostdame_62

Frokostdame_63

Frokostdame_64

Frokostdame_65

Frokostdame_66
(DNA methylase)

Frokostdame_67
(DNA methylase)

Frokostdame_68

Frokostdame_69

Frokostdame_70

Frokostdame_71
(HNH endonuclease)

Frokostdame_72

Frokostdame_73

Frokostdame_74

Frokostdame_75

Frokostdame_76

Frokostdame_77

Frokostdame_78

Frokostdame_79
(RuvC-like resolvase)

Frokostdame_80

Frokostdame_81

Frokostdame_82
(helix-turn-helix DNA binding domain protein)

Frokostdame_83

Frokostdame_84
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH536818
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 48
Pitt Freezer Box Grid# F10
Available Files
GenBank File for PhameratorDownload