Gordonia phage Gambino
Gambino Plaque Picture
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Detailed Information for Phage Gambino
Discovery Information
Isolation HostGordonia terrae 3612
Found ByNeha Gupta
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.44 N, 79.96 W Map
Discovery NotesI discovered this phage from a soil sample collected on Sunday, January 8, 2017 outside Mark A. Nordenberg Hall. The weather was cold around 35 degrees fahrenheit, and the top of the soil was covered in snow with certain areas frozen.
Naming NotesI wanted him to have a fun name since he's an enjoyable phage I think.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 22, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1511
Genome length (bp)53622
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGGCCGGTGA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe plaques from this phage make relatively small clearings around 2mm in size. They are all roughly the same circular shape. Also, they are clear rather than cloudy in appearance.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Gambino_1
(terminase small subunit)

Gambino_2
(terminase large subunit)

Gambino_3
(portal protein)

Gambino_4
(capsid maturation protease)

Gambino_5
(scaffolding protein)

Gambino_6
(major capsid protein)

Gambino_7

Gambino_8

Gambino_9
(head-to-tail stopper)

Gambino_10

Gambino_11

Gambino_12

Gambino_13

Gambino_14

Gambino_15
(tail terminator)

Gambino_16
(major tail protein)

Gambino_17
(tail assembly chaperone)

Gambino_18
(tail assembly chaperone)

Gambino_19
(tapemeasure protein)

Gambino_20
(minor tail protein)

Gambino_21

Gambino_22
(lysin A, L-Ala-D-Glu peptidase domain)

Gambino_23
(lysin A, glycosyl hydrolase domain)

Gambino_24

Gambino_25

Gambino_26

Gambino_27
(lysin B)

Gambino_28

Gambino_29
(minor tail protein)

Gambino_30
(minor tail protein)

Gambino_31

Gambino_32
(minor tail protein)

Gambino_33

Gambino_34
(HNH endonuclease)

Gambino_35

Gambino_36

Gambino_37

Gambino_38

Gambino_39

Gambino_40
(integrase)

Gambino_41
(helix-turn-helix DNA binding protein)

Gambino_42
(peptidase)

Gambino_43

Gambino_44
(helix-turn-helix DNA binding protein)

Gambino_45

Gambino_46
(immunity repressor)

Gambino_47
(helix-turn-helix DNA binding protein)

Gambino_48

Gambino_49
(antirepressor)

Gambino_50

Gambino_51

Gambino_52

Gambino_53

Gambino_54

Gambino_55

Gambino_56

Gambino_57

Gambino_58

Gambino_59

Gambino_60
(DNA polymerase III subunit)

Gambino_61
(exonuclease)

Gambino_62
(ssDNA binding protein)

Gambino_63

Gambino_64

Gambino_65

Gambino_66

Gambino_67

Gambino_68

Gambino_69

Gambino_70
(nucleotidyltransferase)

Gambino_71

Gambino_72

Gambino_73

Gambino_74

Gambino_75
(HNH endonuclease)

Gambino_76

Gambino_77

Gambino_78

Gambino_79

Gambino_80

Gambino_81

Gambino_82
(RuvC-like resolvase)

Gambino_83

Gambino_84

Gambino_85

Gambino_86

Gambino_87

Gambino_89
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586031
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# F12
Available Files
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload