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Gordonia phage GodonK
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Detailed Information for Phage GodonK
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLucy Liu
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.442958 N, 79.9565 W Map
Discovery NotesFlower pot by the stairs of the Litchfield Towers on the right when facing toward the buildings
•Weather conditions at time of collection:
•Chilly and overcast
•43°F
•pot had contained no plants
•soil was very moist and it seems as though it had alot of metal (shiny) particles in it as well
Naming NotesMrs. Godon was my guidance councilor in high school who gave me endless of moral support, pushed me to believe in myself, and take on challenges which I would have never thought I could dream of. The K stands for Mrs. Krumm was the closest teacher, tutor, and mentor I had. She taught me so much and had worked with me for the longest time. She is the reason why I was able to excel in my studies and got me through so much back in my primary school years and middle school years. Without her persistence in helping me, I really would not have been able to do as well as I would have now.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 8, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1606
Genome length (bp)122563
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length7581 bp
GC Content54.5%
Sequencing Notescalled start at base 1, about 50% of reads seem to start at base 2, PAUSE data agrees
Fasta file available?Yes: Download fasta file
Characterization
ClusterDK
Subcluster--
Cluster Life CycleLytic
Other Cluster Members

Click to View

Annotation StatusIn GenBank
Plaque NotesThe plaques from the Direct Plating was very tiny. So tiny that it took 4 people to recognize that there were 3 plaques on the dish.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

GodonK_1

GodonK_2
(G-I-Y Y-I-G endonuclease)

GodonK_3

GodonK_4

GodonK_5

GodonK_6

GodonK_7

GodonK_8

GodonK_9

GodonK_10

GodonK_11

GodonK_12

GodonK_13

GodonK_14

GodonK_15

GodonK_16

GodonK_17

GodonK_18

GodonK_19

GodonK_20

GodonK_21

GodonK_22

GodonK_23

GodonK_24

GodonK_25

GodonK_26

GodonK_27

GodonK_28

GodonK_29

GodonK_30

GodonK_31

GodonK_32

GodonK_33

GodonK_34

GodonK_35

GodonK_36

GodonK_37

GodonK_38

GodonK_39

GodonK_40

GodonK_41

GodonK_42

GodonK_43

GodonK_44

GodonK_45

GodonK_46

GodonK_47

GodonK_48

GodonK_49

GodonK_50
(ADP-ribosyltransferase)

GodonK_51

GodonK_52

GodonK_53
(HNH endonuclease)

GodonK_54

GodonK_55

GodonK_56

GodonK_57

GodonK_58

GodonK_59

GodonK_60

GodonK_61
(terminase)

GodonK_62

GodonK_63

GodonK_64

GodonK_65

GodonK_66
(portal protein)

GodonK_67

GodonK_68

GodonK_69

GodonK_70

GodonK_71

GodonK_72

GodonK_73

GodonK_74

GodonK_75
(metallophosphoesterase)

GodonK_76

GodonK_77

GodonK_78
(major tail protein)

GodonK_79
(head-to-tail adaptor)

GodonK_80

GodonK_81
(glycosyltransferase)

GodonK_82
(glycosyltransferase)

GodonK_83

GodonK_84
(major tail protein)

GodonK_85
(tail assembly chaperone)

GodonK_86
(tail assembly chaperone)

GodonK_87
(tape measure protein)

GodonK_88
(minor tail protein)

GodonK_89
(minor tail protein)

GodonK_90

GodonK_91
(minor tail protein)

GodonK_92
(minor tail protein)

GodonK_93

GodonK_94
(minor tail protein)

GodonK_95

GodonK_96
(minor tail protein)

GodonK_97
(lysin A)

GodonK_98
(holin)

GodonK_99
(membrane protein)

GodonK_100

GodonK_101

GodonK_102

GodonK_103

GodonK_104

GodonK_105

GodonK_106

GodonK_107
(AAA-ATPase)

GodonK_108
(WhiB family transcription factor)

GodonK_109

GodonK_110
(methyltransferase)

GodonK_111

GodonK_112
(MazG-like nucleotide pyrophosphohydrolase)

GodonK_113
(helix-turn-helix DNA binding domain protein)

GodonK_114
(glycosyltransferase)

GodonK_115
(glycosyltransferase)

GodonK_116

GodonK_117

GodonK_118

GodonK_119

GodonK_120

GodonK_121
(lysin B)

GodonK_122

GodonK_128
(HNH endonuclease)

GodonK_133

GodonK_135

GodonK_138

GodonK_139

GodonK_140

GodonK_141

GodonK_143

GodonK_149
(HNH endonuclease)

GodonK_151

GodonK_152

GodonK_156

GodonK_159

GodonK_167

GodonK_168

GodonK_169

GodonK_170

GodonK_171

GodonK_172

GodonK_173

GodonK_174

GodonK_175

GodonK_176

GodonK_177

GodonK_178
(RecA-like DNA recombinase)

GodonK_179

GodonK_180

GodonK_181
(exonuclease)

GodonK_182
(G-I-Y Y-I-G endonuclease)

GodonK_183

GodonK_184
(DNA helicase)

GodonK_185
(RuvC-like resolvase)

GodonK_186
(ribonucleotide reductase)

GodonK_187
(G-I-Y Y-I-G endonuclease)

GodonK_188
(DNA polymerase I)

GodonK_189
(deoxycytidylate deaminase)

GodonK_190

GodonK_191

GodonK_192
(thymidylate synthase)

GodonK_193

GodonK_194
(thymidylate kinase)

GodonK_195

GodonK_196

GodonK_197

GodonK_198

GodonK_199

GodonK_200

GodonK_201
(DNA primase/polymerase)

GodonK_202

GodonK_203

GodonK_204

GodonK_205

GodonK_206
(helix-turn-helix DNA binding domain protein)

GodonK_207

GodonK_208

GodonK_209

GodonK_210

GodonK_211

GodonK_212

GodonK_213

GodonK_214

GodonK_215

GodonK_216

GodonK_217

GodonK_218

GodonK_219

GodonK_220

GodonK_221

GodonK_222

GodonK_223

GodonK_224

GodonK_225

GodonK_226

GodonK_227

GodonK_228
(G-I-Y Y-I-G endonuclease)

GodonK_229

GodonK_230

GodonK_231

GodonK_232

GodonK_233

GodonK_234

GodonK_235

GodonK_236

GodonK_237

GodonK_238

GodonK_239

GodonK_240

GodonK_241

GodonK_242

GodonK_243

GodonK_244

GodonK_245

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK620899
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# D7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload