The Actinobacteriophage Database

Gordonia phage Jodelie19

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Detailed Information for Phage Jodelie19
Discovery Information
Isolation Host	Gordonia rubripertincta NRRL B-16540
Found By	Hannah Romo Barten
Year Found	2019
Location Found	North Las Vegas, NV USA
Finding Institution	College of Southern Nevada
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	30°C
GPS Coordinates	36.2872 N, 115.177 W Map
Discovery Notes	Sample was collected in damp soil located near a duck pond. There were sparse patches of grass near the collection site and feathers indicating evidence of animals residing nearby.
Naming Notes	My chosen name came from a combination of relatives and the phage discovery year.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 21, 2020
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	1814
Genome length (bp)	62331
Character of genome ends	3' Sticky Overhang
Overhang Length	9 bases
Overhang Sequence	CGCCGCTCT
GC Content	51.4%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	DJ
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Aflac AlainaMarie Avazak Burley Chikenjars Conley Crocheter Duffington EndAve Figliar Gill Gravy Hydrus Jodelie19 Kenosha Kerry Magel Mossy Nadmeg Nithya Odesza OhMyWard OlgasClover Phepper Pherobrine Rickmore Roney Runhaar Schwartz33 Secretariat Tanis Untouchable Vardy
Annotating Institution	College of Southern Nevada
Annotation Status	In GenBank
Plaque Notes	Plaques display a rounded morphology with a slightly cloudy tint approx. 1 mm in diameter.
Has been Phamerated?	Yes
Gene List	Click to View Jodelie19_1 Jodelie19_2 Jodelie19_3 (hydrolase) Jodelie19_4 Jodelie19_5 Jodelie19_6 Jodelie19_7 Jodelie19_8 Jodelie19_9 Jodelie19_10 (hydrolase) Jodelie19_11 Jodelie19_12 (HNH endonuclease) Jodelie19_13 (lysin A) Jodelie19_14 (holin) Jodelie19_15 Jodelie19_16 Jodelie19_17 (terminase) Jodelie19_18 Jodelie19_19 Jodelie19_20 (portal protein) Jodelie19_21 Jodelie19_22 (major capsid and protease fusion protein) Jodelie19_23 Jodelie19_24 Jodelie19_25 (major tail protein) Jodelie19_26 Jodelie19_27 (major tail protein) Jodelie19_28 (minor tail protein) Jodelie19_29 Jodelie19_30 Jodelie19_31 (lysin B) Jodelie19_32 Jodelie19_33 (tape measure protein) Jodelie19_34 (minor tail protein) Jodelie19_35 (minor tail protein) Jodelie19_36 Jodelie19_37 Jodelie19_38 Jodelie19_39 Jodelie19_40 Jodelie19_41 Jodelie19_42 Jodelie19_43 Jodelie19_44 Jodelie19_45 Jodelie19_46 Jodelie19_47 Jodelie19_48 Jodelie19_49 Jodelie19_50 Jodelie19_51 Jodelie19_52 Jodelie19_53 Jodelie19_54 Jodelie19_55 Jodelie19_56 Jodelie19_57 Jodelie19_58 Jodelie19_59 Jodelie19_60 (DNA primase/polymerase) Jodelie19_61 Jodelie19_62 (deoxycytidylate deaminase) Jodelie19_63 Jodelie19_64 Jodelie19_65 Jodelie19_66 (ThyX-like thymidylate synthase) Jodelie19_67 Jodelie19_68 Jodelie19_69 Jodelie19_70 Jodelie19_71 Jodelie19_72 Jodelie19_73 Jodelie19_74 Jodelie19_75 Jodelie19_76 Jodelie19_77 Jodelie19_78 Jodelie19_79 Jodelie19_80 Jodelie19_81 Jodelie19_82 Jodelie19_83 Jodelie19_84 Jodelie19_85 (DNA helicase) Jodelie19_86 Jodelie19_87 (HNH endonuclease) Jodelie19_88 (VRR-Nuc domain protein) Jodelie19_89 (exonuclease) Jodelie19_90 (helix-turn-helix DNA-binding domain protein) Jodelie19_91
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MT498052
Refseq Number	None yet
Published in Paper	Harrington et al 2021, Microbiology Resource Announcements: Genome Sequences of Gordonia Bacteriophages Jodelie19, BlingBling, and Burnsey
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	98
Pitt Freezer Box Grid#	C6
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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