Arthrobacter phage Lymara
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Detailed Information for Phage Lymara
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Found ByLydia Plakias
Year Found2016
Location FoundNorthampton, MA USA
Finding InstitutionSmith College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates42.315532 N, 72.638109 W Map
Discovery NotesIt was downpouring during collection. Found underneath a tree and dug about 2 inches into the soil. The soil was mulchy like and damp.
Naming NotesThe name Lymara is a combination of Lydia and Samara, Samara being Lydia's lab partner.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 3, 2017
Sequencing FacilitySmith College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3431
Genome length (bp)68762
Character of genome endsCircularly Permuted
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe morphology indicates that the bacteriophage is lytic in nature as it creates clear plaques.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Lymara_1

Lymara_2

Lymara_3
(terminase)

Lymara_4
(portal protein)

Lymara_5
(capsid maturation protease and MuF-like fusion protein)

Lymara_6

Lymara_7

Lymara_8

Lymara_9

Lymara_10
(scaffolding protein)

Lymara_11
(capsid decoration protein)

Lymara_12
(major capsid protein)

Lymara_13

Lymara_14

Lymara_15

Lymara_16

Lymara_17

Lymara_18
(tail sheath protein)

Lymara_19
(tail tube protein)

Lymara_20

Lymara_21

Lymara_22
(tape measure protein)

Lymara_23
(minor tail protein)

Lymara_24
(minor tail protein)

Lymara_25
(minor tail protein)

Lymara_26
(minor tail protein)

Lymara_27
(minor tail protein)

Lymara_28

Lymara_29

Lymara_30

Lymara_31
(lysin A)

Lymara_32
(holin)

Lymara_33

Lymara_34

Lymara_35

Lymara_36

Lymara_37
(helix-turn-helix DNA binding domain protein)

Lymara_38
(baseplate wedge protein)

Lymara_39
(baseplate J-like protein)

Lymara_40

Lymara_41

Lymara_42

Lymara_43
(DNA binding protein)

Lymara_44
(helix-turn-helix DNA binding domain protein)

Lymara_45

Lymara_46
(exonuclease)

Lymara_47
(RecT-like ssDNA binding protein)

Lymara_48

Lymara_49

Lymara_50

Lymara_51

Lymara_52

Lymara_53

Lymara_54

Lymara_55

Lymara_56

Lymara_57

Lymara_58

Lymara_59

Lymara_60

Lymara_61

Lymara_62

Lymara_63

Lymara_64

Lymara_65

Lymara_66

Lymara_67

Lymara_68

Lymara_69

Lymara_70

Lymara_71

Lymara_72

Lymara_73

Lymara_74

Lymara_75

Lymara_76
(DNA methylase)

Lymara_77
(methyltransferase)

Lymara_78

Lymara_79
(DNA methylase)

Lymara_80

Lymara_81

Lymara_82

Lymara_83

Lymara_84

Lymara_85

Lymara_86
(endonuclease)

Lymara_87
(helicase)

Lymara_88

Lymara_89
(CMP N-glycosidase)

Lymara_90

Lymara_91

Lymara_92
(RusA-like resolvase (endonuclease))

Lymara_93

Lymara_94

Lymara_95

Lymara_96

Lymara_97

Lymara_98
(HNH endonuclease)

Lymara_99
(ssDNA binding protein)

Lymara_100

Lymara_101

Lymara_102

Lymara_103
(DNA polymerase III sliding clamp (beta))

Lymara_104

Lymara_105

Lymara_106
(helix-turn-helix DNA binding domain protein)

Lymara_107

Lymara_108
(hydrolase)

Lymara_109
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234234
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 32
Pitt Freezer Box Grid# E2
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload