Microbacterium phage Omphalos
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Detailed Information for Phage Omphalos
Discovery Information
Isolation HostMicrobacterium testaceum NRRL B-59317
Found ByIan McGowen
Year Found2017
Location FoundSpokane, WA United States
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates47.668843 N, 117.400879 W Map
Discovery NotesThis phage was isolated from a garden bed containing pumpkins in wet soil.
Naming NotesThe plaque resembles an archery target and Omphalos is a synonym for bulls-eye, but sounds much cooler.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage721
Genome length (bp)235841
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length18632 bp
GC Content33.7%
Sequencing Notes20% of sequencing reads contain a 3634 bp deletion of the terminal repeat, between positions 12958 - 16591 bp and 230167 - 233800 bp
at position 13172 bp 40% of reads contain a G instead of consensus T
at position 230381 bp 40% of reads contain a G instead of consensus T
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusBeing Annotated (Expected completion by 5/15/2019)
Plaque NotesThe plaques have an irregular multi-ringed appearance
Has been Phamerated?Yes
Gene List

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Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload