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Gordonia phage SCentae
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Detailed Information for Phage SCentae
Discovery Information
Isolation HostGordonia terrae 3612
Found BySvitlana Martynuk
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.445404 N, 80.013111 W Map
Discovery NotesPhage was isolated from soil on the Three Rivers Trail in Pittsburgh right in front of the Carnegie Science Center. The Three River Trails runs, as one would guess, right next to the river, so the soil was very moist and teeming with bacteria, and the S. Centae phage.
Naming NotesThis name is inspired by my nick name alluding to 50 Cent, called "Svitty Cent". This name is unique just like my phage, which has a unique morphology. I just added the "ae" to Cent to give it a nice sound, and restricted Svitty to just "S." for the sake of pronunciation.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 15, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage665
Genome length (bp)151316
Character of genome endsCircularly Permuted
GC Content66.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDO
Subcluster--
Cluster Life CycleLytic
Other Cluster Members

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Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe S. Centae phage has a relatively unique morphology. The plaques formed vary from pin point, 0.7mm, and 1mm in diameter. Never in between, and after several plaque purifications, this morphology was concluded to be the same phage.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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SCentae_1

SCentae_2

SCentae_3

SCentae_4

SCentae_5

SCentae_6

SCentae_7
(nicotinate ribosyltransferase)

SCentae_8

SCentae_9

SCentae_10

SCentae_11

SCentae_12

SCentae_13

SCentae_14

SCentae_15

SCentae_16

SCentae_17

SCentae_18

SCentae_19

SCentae_20

SCentae_21

SCentae_22

SCentae_23

SCentae_24

SCentae_25

SCentae_26

SCentae_27

SCentae_28

SCentae_29

SCentae_30

SCentae_31

SCentae_32

SCentae_33

SCentae_34

SCentae_35

SCentae_36

SCentae_37

SCentae_38

SCentae_39

SCentae_40

SCentae_41

SCentae_42

SCentae_44

SCentae_45

SCentae_46

SCentae_47

SCentae_48

SCentae_49

SCentae_50

SCentae_51

SCentae_52

SCentae_53
(WhiB family transcription factor)

SCentae_54

SCentae_55

SCentae_56

SCentae_57

SCentae_58

SCentae_59

SCentae_60

SCentae_61

SCentae_62
(ThyX-like thymidylate synthase)

SCentae_63

SCentae_64

SCentae_65

SCentae_66

SCentae_67

SCentae_68

SCentae_69

SCentae_70

SCentae_71

SCentae_72

SCentae_73

SCentae_74

SCentae_75

SCentae_76
(thioredoxin)

SCentae_77

SCentae_78

SCentae_79

SCentae_80

SCentae_81

SCentae_82

SCentae_83

SCentae_84

SCentae_85

SCentae_86
(HNH endonuclease)

SCentae_87
(portal protein)

SCentae_88

SCentae_89

SCentae_90

SCentae_91
(RNA ligase)

SCentae_92

SCentae_93
(capsid maturation protease)

SCentae_94

SCentae_95
(major capsid protein)

SCentae_96

SCentae_97

SCentae_98

SCentae_99

SCentae_100

SCentae_101

SCentae_102

SCentae_103

SCentae_104

SCentae_105

SCentae_106

SCentae_107

SCentae_108

SCentae_109

SCentae_110

SCentae_111

SCentae_112
(tail sheath protein)

SCentae_113
(endonuclease)

SCentae_114

SCentae_115

SCentae_116
(tail assembly chaperone)

SCentae_117
(tail assembly chaperone)

SCentae_118
(tape measure protein)

SCentae_119

SCentae_120

SCentae_121

SCentae_122

SCentae_123

SCentae_124

SCentae_125

SCentae_126

SCentae_127

SCentae_128
(baseplate wedge protein)

SCentae_129
(baseplate wedge protein)

SCentae_130

SCentae_131

SCentae_132

SCentae_133
(DNA helicase)

SCentae_134

SCentae_135

SCentae_136

SCentae_137

SCentae_138

SCentae_139

SCentae_140

SCentae_141

SCentae_142

SCentae_143

SCentae_144

SCentae_145
(DnaC-like helicase loader)

SCentae_146
(DnaB-like dsDNA helicase)

SCentae_147
(DNA primase)

SCentae_148

SCentae_149
(chaperonin, DnaJ-like)

SCentae_150
(ssDNA binding protein)

SCentae_151

SCentae_152
(DnaE-like DNA polymerase III subunit alpha)

SCentae_153
(RecA-like DNA recombinase)

SCentae_154
(Holliday junction resolvase)

SCentae_155
(Cas4 family exonuclease)

SCentae_156

SCentae_157

SCentae_158

SCentae_159

SCentae_160

SCentae_161

SCentae_162

SCentae_163

SCentae_164

SCentae_165

SCentae_166
(HNH endonuclease)

SCentae_167

SCentae_168

SCentae_169

SCentae_170
(lysin A, peptidase domain)

SCentae_171
(lysin A, glycosyl hydrolase domain)

SCentae_172
(holin)

SCentae_173
(terminase)

SCentae_174

SCentae_175

SCentae_176
(lysin B)

SCentae_177
(RuvC-like resolvase)

SCentae_178

SCentae_179

SCentae_180

SCentae_181

SCentae_182

SCentae_183
(helix-turn-helix DNA binding protein)

SCentae_184

SCentae_185
(toxin in toxin/antitoxin system, HicA-like)

SCentae_186

SCentae_187

SCentae_188

SCentae_189

SCentae_190

SCentae_191

SCentae_192

SCentae_193

SCentae_194

SCentae_195

SCentae_196

SCentae_197

SCentae_198

SCentae_199

SCentae_200

SCentae_201

SCentae_202

SCentae_203

SCentae_204

SCentae_205

SCentae_206

SCentae_207

SCentae_208

SCentae_209

SCentae_210

SCentae_211

SCentae_212

SCentae_213

SCentae_214

SCentae_215

SCentae_216

SCentae_217

SCentae_218

SCentae_219

SCentae_220

SCentae_221

SCentae_222

SCentae_223

SCentae_224

SCentae_225

SCentae_226

SCentae_227
(helix-turn-helix DNA binding protein)

SCentae_228

SCentae_229

SCentae_230

SCentae_231

SCentae_232

SCentae_233

SCentae_234

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK977696
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3^10pfu/ml
Date of SEA Lysate Titering Oct 19, 2016
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload