Arthrobacter phage Seume
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| Detailed Information for Phage Seume | |
| Discovery Information | |
| Isolation Host | Arthrobacter sp. ATCC 21022 |
| Found By | Bre Krohn and Bri Phernetton |
| Year Found | 2013 |
| Location Found | Somerset, WI USA |
| Finding Institution | University of Wisconsin-River Falls |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 45.166643 N, 92.717961 W Map |
| Discovery Notes | Soil sample was taken from a tomato garden on 9-8-13 at 9:43 AM. The temperature at the time of the collection was humid and partly sunny.The soil was taken from the ground 50 mm deep and it was loose and mostly dry. |
| Naming Notes | The phage is named after Bri Phernetton's high school science teacher, who is one of the most influential and admirable people in her life. He inspired her to pursue a science major and will always be a role model. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 20, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 12826 |
| Genome length (bp) | 15319 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CCCGCGCCACC |
| GC Content | 60.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AN |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotation Status | In GenBank |
| Plaque Notes | the plaques are about 1 cm in diameter including a faint halo that surrounds each plaque. Similiar to Klycomp, Katherine, and Poppy |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSeume_1 Seume_2 Seume_3 Seume_4 Seume_5 Seume_6 Seume_7 Seume_8 Seume_9 Seume_10 Seume_11 Seume_12 Seume_13 Seume_14 Seume_15 Seume_16 Seume_17 Seume_18 Seume_19 Seume_20 Seume_21 Seume_22 Seume_23 Seume_24 Seume_25 Seume_26 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF140426 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.5x10^10 |
| Date of SEA Lysate Titering | Oct 17, 2013 |
| Pitt Freezer Box# | 1 |
| Pitt Freezer Box Grid# | B6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
