Gordonia phage Shlim410
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Detailed Information for Phage Shlim410
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAmanda Stevenson
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.443159 N, 79.955838 W Map
Discovery NotesThe soil sample came from a small garden area. The soil was very wet due to icy conditions.
Naming NotesThe number represents the area code of where I am from, Southern Maryland. The name "Shlim" is a nickname for friends. It is part of the "DMV lingo" (DC Maryland Virginia).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage94
Genome length (bp)53182
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTGCCAAGGGGA
GC Content65.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Louisiana at Monroe
Annotation StatusBeing Annotated (Expected completion by 5/1/2021)
Plaque NotesThe phage has medium-sized plaques. The center of the plaques are clear, surrounded by a hazy ring, like a halo. The size of the plaques varies, but overall are medium.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 56
Pitt Freezer Box Grid# D3
Available Files
Restriction Digest PictureDownload
EM PictureDownload