Gordonia phage TZGordon
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Detailed Information for Phage TZGordon
Discovery Information
Isolation HostGordonia terrae 3612
Found ByTommy Zheng
Year Found2019
Location FoundEast Stroudsburg, PA USA
Finding InstitutionLehigh University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature-4°C
GPS Coordinates41.0633 N, 75.0603 W Map
Discovery NotesSoil was collected behind Tommy's family's restaurant. The soil was frozen; organic matter present in the soil(twigs/leaves). The soil was extremely watery/muddy. After finding Phage Gekyume(direct)on M.smegmatis, the soil was enriched with in a "cocktail" of 6 hosts and plated on individual lawns of different hosts. One host, Gordonia, was infected by this enrichment solution. The phage was purified by Meg Kenna.
Naming NotesThe name merges the students initials with the host.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 26, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage399
Genome length (bp)44904
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceTCCGGGCCGGTA
GC Content66.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCU
SubclusterCU1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionLehigh University
Annotation StatusIn GenBank
Plaque NotesLarge,very clear plaques, ranging from 3-5mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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TZGordon_1

TZGordon_2

TZGordon_3

TZGordon_4

TZGordon_5

TZGordon_6

TZGordon_7
(esterase)

TZGordon_8
(terminase small subunit)

TZGordon_9
(terminase large subunit)

TZGordon_10
(portal protein)

TZGordon_11
(capsid maturation protease)

TZGordon_12
(major capsid protein)

TZGordon_13

TZGordon_14
(head-to-tail adaptor)

TZGordon_15
(head-to-tail stopper)

TZGordon_16

TZGordon_17

TZGordon_18
(tail terminator)

TZGordon_19
(major tail protein)

TZGordon_20
(tail assembly chaperone)

TZGordon_21
(tail assembly chaperone)

TZGordon_22
(tape measure protein)

TZGordon_23
(minor tail protein)

TZGordon_24
(minor tail protein)

TZGordon_25
(endolysin)

TZGordon_26

TZGordon_27
(tail needle protein)

TZGordon_28
(minor tail protein)

TZGordon_29
(minor tail protein)

TZGordon_30

TZGordon_31

TZGordon_32
(lipoprotein)

TZGordon_34
(ssDNA binding protein)

TZGordon_35

TZGordon_36

TZGordon_37

TZGordon_38

TZGordon_39
(tyrosine integrase)

TZGordon_40

TZGordon_41
(immunity repressor)

TZGordon_42
(helix-turn-helix DNA binding domain protein)

TZGordon_43
(ssDNA binding protein)

TZGordon_44

TZGordon_45

TZGordon_46

TZGordon_47
(exonuclease)

TZGordon_48

TZGordon_49
(RepA-like replication initiator)

TZGordon_50
(RecA-like DNA recombinase)

TZGordon_51

TZGordon_52

TZGordon_53
(HNH endonuclease)

TZGordon_54

TZGordon_55
(DnaB-like dsDNA helicase)

TZGordon_56
(ssDNA binding protein)

TZGordon_57

TZGordon_58
(RusA-like resolvase)

TZGordon_59

TZGordon_60

TZGordon_61

TZGordon_62
(helix-turn-helix DNA binding domain protein)

TZGordon_63

TZGordon_64
(glutaredoxin)

TZGordon_65
(HNH endonuclease)

TZGordon_66

TZGordon_67
(nuclease)

TZGordon_68

TZGordon_69

TZGordon_70

TZGordon_71
(nucleoside deoxyribosyltransferase)

TZGordon_72

TZGordon_73

TZGordon_74

TZGordon_75

TZGordon_76

TZGordon_77

TZGordon_78

TZGordon_79

TZGordon_80

TZGordon_81

TZGordon_82

TZGordon_83

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT553344
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload