Detailed Information for Phage Toulouse | |
Discovery Information | |
Isolation Host | Arthrobacter sp. ATCC 21022 |
Found By | Megan Archambault |
Year Found | 2013 |
Location Found | Hudson, WI USA |
Finding Institution | University of Wisconsin-River Falls |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 44.984533 N, 92.7545 W Map |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 28, 2014 |
Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
Shotgun Sequencing Method | 454 Pyrosequencing |
Approximate Shotgun Coverage | 304 |
Sanger Finishing Reactions | 4 |
Genome length (bp) | 15319 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CCCGCGCCACC |
GC Content | 60.3% |
Sequencing Notes | There is a polymorphism at base 11080 in the sequence. The currently called base is a T, but 48% of the shotgun reads had a C instead, and a Sanger walk in this region showed a nearly evenly mixed C and T peak. |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | AN |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
Click to View |
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Number of Genes | 25 |
Has been Phamerated? | Yes |
Gene List |
Click to ViewToulouse_1 Toulouse_2 Toulouse_3 Toulouse_4 Toulouse_5 Toulouse_6 Toulouse_7 Toulouse_8 Toulouse_9 Toulouse_10 Toulouse_11 Toulouse_12 Toulouse_13 Toulouse_14 Toulouse_15 Toulouse_16 Toulouse_17 Toulouse_18 Toulouse_19 Toulouse_20 Toulouse_21 Toulouse_22 Toulouse_23 Toulouse_24 Toulouse_25 |
Submitted Annotation in DNA Master Format | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | KU160670 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 3.9x10^9 |
Pitt Freezer Box# | 1 |
Pitt Freezer Box Grid# | B8 |
Available Files | |
Plaque Picture | Download |
Virtual Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |