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Gordonia phage VanDeWege
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Detailed Information for Phage VanDeWege
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAlexandra VanDeWege
Year Found2016
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.929508 N, 85.588933 W Map
Discovery NotesFound underneath a squash plant in Calvin College's Campus Gardens. The soil sample was rich, dark, and somewhat moist. There was also some organic matter within the soil sample.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 4, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage340
Genome length (bp)58972
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionGettysburg College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

VanDeWege_1
(helix-turn-helix DNA binding domain protein)

VanDeWege_2

VanDeWege_3

VanDeWege_4

VanDeWege_5
(terminase)

VanDeWege_6

VanDeWege_7

VanDeWege_8
(helix-turn-helix DNA binding domain protein)

VanDeWege_9

VanDeWege_10

VanDeWege_11
(polynucleotide kinase)

VanDeWege_12

VanDeWege_13
(portal)

VanDeWege_14

VanDeWege_15
(capsid maturation protease and MuF-like fusion protein)

VanDeWege_16

VanDeWege_17

VanDeWege_18
(DNA binding domain protein)

VanDeWege_19

VanDeWege_20
(RNA ligase)

VanDeWege_21

VanDeWege_22
(major capsid protein)

VanDeWege_23

VanDeWege_24

VanDeWege_25
(major tail protein)

VanDeWege_26
(head-to-tail adaptor)

VanDeWege_27

VanDeWege_28

VanDeWege_29

VanDeWege_30
(tail assembly chaperone)

VanDeWege_31

VanDeWege_32
(tape measure protein)

VanDeWege_33
(minor tail protein)

VanDeWege_34
(minor tail protein)

VanDeWege_35

VanDeWege_36
(minor tail protein)

VanDeWege_37

VanDeWege_38

VanDeWege_39
(minor tail protein)

VanDeWege_40

VanDeWege_41

VanDeWege_42
(lysin A)

VanDeWege_43
(holin)

VanDeWege_44

VanDeWege_45

VanDeWege_46

VanDeWege_47
(lysin B)

VanDeWege_48
(integrase)

VanDeWege_49

VanDeWege_50
(integrase)

VanDeWege_51
(immunity repressor)

VanDeWege_52
(HTH DNA binding domain protein)

VanDeWege_53

VanDeWege_54

VanDeWege_55

VanDeWege_56

VanDeWege_57
(RecE-like exonuclease)

VanDeWege_58
(RecT-like ssDNA binding protein)

VanDeWege_59

VanDeWege_60

VanDeWege_61
(DNA methyltransferase)

VanDeWege_62
(helix-turn-helix DNA binding domain protein)

VanDeWege_63
(helix-turn-helix DNA binding domain protein)

VanDeWege_64

VanDeWege_65
(RuvC-like resolvase)

VanDeWege_66

VanDeWege_67

VanDeWege_68

VanDeWege_69

VanDeWege_70

VanDeWege_71

VanDeWege_72

VanDeWege_73

VanDeWege_74
(nicotinamide riboside transporter)

VanDeWege_75

VanDeWege_76

VanDeWege_77

VanDeWege_78

VanDeWege_79

VanDeWege_80

VanDeWege_81

VanDeWege_82

VanDeWege_83

VanDeWege_84
(DNA methylase)

VanDeWege_85

VanDeWege_86

VanDeWege_87
(HNH endonuclease)

VanDeWege_88
(helix-turn-helix DNA binding domain protein)

VanDeWege_89

VanDeWege_90

VanDeWege_91

VanDeWege_92

VanDeWege_93

VanDeWege_94

VanDeWege_95

VanDeWege_96

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK864264
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 10^8
Date of SEA Lysate Titering Nov 30, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# B3
Available Files
GenBank File for PhameratorDownload