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Gordonia phage Whitney
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Detailed Information for Phage Whitney
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMakenna Romanelli
Year Found2019
Location FoundPittsburgh, PA United States of America
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.44 N, 79.95 W Map
Discovery NotesThe sample was collected from under a group of plants growing next to the sidewalk in Oakland, Pittsburgh, PA. The location had various rocks and weeds scattered throughout the soil, as well as the main plant. It was collected at 4 PM on September 11th, 2019. The soil felt fresh, almost damp, despite its location in the sun and the recent lack of rain.
Naming NotesThis name was inspired off of Whitney Houston.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1200
Genome length (bp)55784
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGGGGCAT
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionSt. Louis Community College
Annotation StatusIn GenBank
Plaque NotesPlaques are round, clear, and approximately 1-2 mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Whitney_1
(HNH endonuclease)

Whitney_2

Whitney_3
(terminase)

Whitney_4
(portal protein)

Whitney_5
(capsid maturation protease)

Whitney_6
(scaffolding protein)

Whitney_7
(major capsid protein)

Whitney_8

Whitney_9
(head-to-tail adaptor)

Whitney_10
(head-to-tail stopper)

Whitney_11

Whitney_12
(tail terminator)

Whitney_13
(major tail protein)

Whitney_14

Whitney_15
(tail assembly chaperone)

Whitney_16
(tail assembly chaperone)

Whitney_17

Whitney_18
(endonuclease VII)

Whitney_19
(tape measure protein)

Whitney_20
(minor tail protein)

Whitney_21
(minor tail protein)

Whitney_22

Whitney_23
(lysin A, L-Ala-D-Glu peptidase domain)

Whitney_24
(lysin A, glycosyl hydrolase domain)

Whitney_25
(holin)

Whitney_26

Whitney_27

Whitney_28

Whitney_29
(lysin B)

Whitney_30
(minor tail protein)

Whitney_31

Whitney_32

Whitney_33

Whitney_34
(minor tail protein)

Whitney_35
(minor tail protein)

Whitney_36
(transposase)

Whitney_37

Whitney_38
(minor tail protein)

Whitney_39
(acetyltransferase)

Whitney_40

Whitney_41

Whitney_42
(helix-turn-helix DNA binding protein)

Whitney_43

Whitney_44

Whitney_45

Whitney_46
(helix-turn-helix DNA binding domain)

Whitney_47

Whitney_48

Whitney_49

Whitney_50
(tyrosine integrase)

Whitney_51
(immunity repressor)

Whitney_52
(helix-turn-helix DNA binding domain)

Whitney_53

Whitney_54

Whitney_55
(helix-turn-helix DNA binding domain)

Whitney_56
(antirepressor)

Whitney_57

Whitney_58

Whitney_59

Whitney_60
(excise)

Whitney_61

Whitney_62

Whitney_63

Whitney_64

Whitney_65

Whitney_66
(WhiB family transcription factor)

Whitney_67
(helix-turn-helix DNA binding domain)

Whitney_68

Whitney_69
(exonuclease)

Whitney_70

Whitney_71

Whitney_72

Whitney_73

Whitney_74
(methyltransferase)

Whitney_75

Whitney_76

Whitney_77

Whitney_78

Whitney_79

Whitney_80
(DNA methylase)

Whitney_81

Whitney_82
(helix-turn-helix DNA binding domain)

Whitney_83

Whitney_84

Whitney_85

Whitney_86

Whitney_87
(DNA binding protein)

Whitney_88

Whitney_89
(RusA-like resolvase (endonuclease))

Whitney_90

Whitney_91

Whitney_92

Whitney_93

Whitney_94

Whitney_95

Whitney_96

Whitney_97

Whitney_98

Whitney_99
(helix-turn-helix DNA binding domain)

Whitney_100

Whitney_101

Whitney_102

Whitney_103

Whitney_104

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ747510
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 115
Pitt Freezer Box Grid# E8
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload