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Arthrobacter phage Whytu
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Detailed Information for Phage Whytu
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByLucy Nakashima
Year Found2019
Location FoundMarina del Rey, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature25°C
GPS Coordinates33.9837 N, 118.4319 W Map
Discovery NotesArthrobacter phage Whytu was isolated by Lucy Nakashima from soil by direct plating at 25ºC. The site was a part that included a playground and an open, grassy area for dogs. There were some trees around the site, as well as gopher holes in the ground. The soil was collected from the far side of the part near the cement walkway. The phage was characterized by Team All the World’s a Phage (Sarah Fett, Mujtahid Rahman, Vincent Tse, Aida Vargas) and Team PhageBook (Lucy Nakashima, Breanna Cayabyab, Haoyuan Liu).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 3, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage5895
Genome length (bp)15369
Character of genome ends3' Sticky Overhang
Overhang Length15 bases
Overhang SequenceCCACGGTCCCCGTCC
GC Content64.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterFI
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionUniversity of California, Los Angeles
Annotation StatusIn GenBank
Plaque NotesDescription of plaque morphology: Clear

Average size (and size range) diameter in mm: 2mm (1mm on some plates, 3 mm on others)
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT024870
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload