Phage List
Detailed Phage Information
Access detailed information about all phages, or about a particular phage (given its name).
GET /api/phages/?format=api&page=58
{ "count": 28869, "next": null, "previous": "https://phagesdb.org/api/phages/?format=api&page=57", "results": [ { "phage_name": "Yunque", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "El Yunque is a rainforest in Puerto Rico that I had fond memories of from my childhood when I visited the land with my family.", "finder_name": "Zachary Howard", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.441504 N", "found_GPS_long": "79.955104 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "The dirt was relatively dry compared to my previous samples and it had more greenery growing in the vicinity of the collection site. It was found outside Posvar Hall on the campus of the University of Pittsburgh, an area frequently visited by people.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are smaller then 2mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Yunque_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yunque_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-22T13:07:26-05:00", "date_modified": "2020-09-17T14:12:03-04:00" }, { "phage_name": "Yuqigi", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Cheng-Yu Shen", "found_city": "Hualien", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "23.812778 N", "found_GPS_long": "121.436111 E", "found_year": 2022, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Yuqigi_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-25T15:01:59-04:00", "date_modified": "2024-04-25T15:01:59-04:00" }, { "phage_name": "Yurt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named Yurt because it was found on the roof of a yurt!", "finder_name": "Adam Rudner + Emily Wood", "found_city": "San Francisco", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "39.230382 N", "found_GPS_long": "123.366816 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Damp soil collected from the roof of the original yurt at Orr Hot Springs in San Francisco.", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques appear very small.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "tricolor", "strain_name": "NRRL B-16925", "strain_species": { "id": 68, "genus": "Streptomyces", "species_name": "tricolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 68, "genus": "Streptomyces", "species_name": "tricolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Yurt.jpg", "dnam_file": null, "date_added": "2024-05-29T09:23:55-04:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Yusra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It means to me to never give up and always work hard for what I want.it is typical girl name in Sudan.", "finder_name": "Somia Jamma", "found_city": "Manhattan", "found_state": "KS", "found_country": "United States", "found_GPS_lat": "39.2 N", "found_GPS_long": "96.56 W", "found_year": 2019, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "I took the soil from flower garden in the a hot sunny day. I took the deeper soil.\r\n\r\nHead 67.7 nm x 63.4nm\r\nTail: very long, but incorrectly measured. Will correct.", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "It is small, and clear plaque, with smooth boarder, 1 mm diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Yusra_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Yusra_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yusra_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Yusra_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-17T22:10:24-04:00", "date_modified": "2020-09-17T14:11:41-04:00" }, { "phage_name": "YuuY", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name is UY. SEA-PHAGES has taught me, as well as my peers, what it means to fail or to mess up in science. Even if a procedure was performed correctly, there were times when the experiment still did not work. It was discouraging. But the lesson I learned is that sometimes, to get to who and where I am today (\"uY\"), it required me to go backwards first (\"Yu\") in order to fix and perfect previous steps. My mistakes were no longer setbacks, but opportunities to make me a better scientist.", "finder_name": "Uylae Kim", "found_city": "Riverside", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.90861 N", "found_GPS_long": "117.495 W", "found_year": 2019, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": true, "discovery_notes": "The soil was wet, possessing a mud-like texture as it was obtained from the side of a stream. The sample was initially a dark brown coloration with few light brown spots. Sample contained biodegradable plant organisms such as roots, flowers, and duck feces; the composition of the saturated soil consisted of sand and organic matter. Soil was retrieved from the surface of the ground and down about 2-3 inches below surface level. The time of day was 3:40 p.m. on January 8, 2019.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA10" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are clear, but surrounded by a dark halo ring. This indicates the presence of a lysogenic phage colony. The diameter of the clear inner circle alone is 2 mm, and the combined diameter of the circle with the outer ring is around 4 mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-05-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2327, "finishing_reactions": 0, "genome_length": 40996, "gcpercent": "63.2", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/YuuY_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-08-07T16:01:59-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/YuuY_Flat.txt", "qced_genbank_file_date": "2019-08-07T16:01:59-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN284901", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/YuuY_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/YuuY_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/YuuY.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/YuuY_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-03-15T08:44:52-04:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Yuyu12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joseph Sanchez", "found_city": "Queens", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CUNY", "institution_name": "CUNY, Queens College", "institution_logo": "https://phagesdb.org/media/institutions/QueensCollegeB.png", "institution_url": "http://www.qc.cuny.edu/", "institution_city": "Queens", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.736562", "institution_longitude": "-73.82028" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-28T10:44:09-05:00", "date_modified": "2017-09-22T12:31:45-04:00" }, { "phage_name": "Yuzu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The soil sample from which Yuzu was isolated was found in the parking lot of an ice skating rink. The phage was named after the sample collector’s favorite figure skater, Yuzuru Hanyu, whose nickname is Yuzu.", "finder_name": "Sara Barcik Weissman", "found_city": "Lakewood", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.830741 N", "found_GPS_long": "118.163527 W", "found_year": 2022, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Phage Yuzu was isolated from soil, collected on 4/2/22 by Sara Barcik Weissman, at a depth of about 16.76cm from soil taken in a parking lot 1 foot away from a rotting fruit and 4 feet away from cement. This sample was slightly moist. Air temp at time of collection was 18.9˚C. \r\n\r\nYuzu was isolated by enriched plating at 35˚C. Additional MgCl2 added to enrichment broth and MHA plates. Enrichment tube with 7H9/Glycerol and the cation 100 mM MgCl2 resulted in plaque formation following plating on MHA + MgCl2 plate.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Primarily clear in center with turbid, fuzzy edges. Occasional halos are seen as well as small plaques with very defined crisp edges.\r\nAverage size (and size range) diameter in mm: 1-3 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-07-13T11:24:11-04:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "Yvolette", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My pet’s name is Maddie. She’s an 8y/o Yorkie and she looks like a wookiee from Star Wars so I combined the two names. Maddie + wookiee = Makiee.", "finder_name": "Yolyvette Rosario López", "found_city": "Gurabo", "found_state": "PR", "found_country": "United States", "found_GPS_lat": "18.23931 N", "found_GPS_long": "66.00613 W", "found_year": 2024, "p_institution": { "institution_code": "UTRB", "institution_name": "Universidad Ana G. Mendez, Gurabo campus", "institution_logo": "https://phagesdb.org/media/institutions/uturabo.jpg", "institution_url": "", "institution_city": "Gurabo", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil was a little humid with no vegetation. It was also close to an anthill and a tree root. The ambient temperature was ~28.33°C.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were noticeable as a clear medium size circle with the presence of a halo. They have shown steady and quick growth with constant stability.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Makiee_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-13T08:40:13-05:00", "date_modified": "2025-04-04T11:37:24-04:00" }, { "phage_name": "Yvonnetastic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I couldn't use my last name in the phage name because it has been co-opted by scientists!", "finder_name": "Yvonne Pham", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44 N", "found_GPS_long": "79.96 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DD", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 641, "finishing_reactions": 0, "genome_length": 98136, "gcpercent": "59.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGCGAAGCTC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 198, "num_tRNAs": 5, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU963248", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Yvonnetastic_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Yvonnetastic_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Yvonnetastic_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Yvonnetastic.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yvonnetastic_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Yvonnetastic_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Yvonnetastic_Final_gb.dnam5", "date_added": "2015-10-08T09:34:13-04:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Yzma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the scary-beyond-all-reason villain Yzma in the movie The Emperor's New Groove.", "finder_name": "Kathryn Koirtyohann", "found_city": "Fort Myers", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "26.45934 N", "found_GPS_long": "81.765225 W", "found_year": 2016, "p_institution": { "institution_code": "FGCU", "institution_name": "Florida Gulf Coast University", "institution_logo": "https://phagesdb.org/media/institutions/fl-gulf-coast-logo-mod.png", "institution_url": "http://www.fgcu.edu/", "institution_city": "Fort Myers", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "26.464294", "institution_longitude": "-81.77359" }, "enriched_sample": true, "discovery_notes": "The soil sample was found at the base of a small tree outside of Osprey Hall on the FGCU campus. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were clear and mostly 2mm in diameter, though some were more like 1 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Yzma_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Yzma_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yzma_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Yzma_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-21T11:48:33-05:00", "date_modified": "2020-09-17T14:07:52-04:00" }, { "phage_name": "Yzma11", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Teresa and I both really enjoy Disney movies, especially Emperor's New Groove. Yzma is a character from that amazing movie. We knew that we would need a number as well, so I chose 11 because that is my favorite number.", "finder_name": "Mia Gruler, Teresa Oliveri", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6676 N", "found_GPS_long": "117.4025 W", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil was very close to a tree's roots near College Hall at Gonzaga University. The ground surrounding it was fairly snowy, but that particular spot was not. The weather was cold and fairly gloomy considering it was winter.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Our plaque is round, very clear, and fairly small in diameter. The many times we have seen this plaque it is always round and always very clear. We have seen it become bigger at times, but it is always very well rounded.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Yzma11_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yzma11_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-24T22:50:13-04:00", "date_modified": "2021-01-28T11:04:23-05:00" }, { "phage_name": "Zaaboot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zaaboot is Arabic Egyptian slang for a hoodie. This term is currently outdated in Egypt and used by few elderly people. I hope naming this phage so would help preserve this nice joyful name.", "finder_name": "Noor Osama Khalil", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.326086 N", "found_GPS_long": "76.617134 W", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "I obtained my soil sample from the community garden near Johns Hopkins University on Thursday, September 6th at about 10:00 AM. The temperature was 75 degrees F and it was cloudy with light rain. I dug about 3 cm deep at a depression where some small seedlings were planted. The soil was very moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "MYO", "plaque_notes": "Usually bulls-eye with cloudy edges. The cloudy edges are not always visible.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaaboot_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaaboot_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zaaboot_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaaboot_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaaboot_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-11-29T13:43:55-05:00", "date_modified": "2020-09-17T14:05:57-04:00" }, { "phage_name": "Zaatar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "While sitting in class, Maisam Ghannam made a joke that it would be funny to name our phages after Middle Eastern food items. He brought up the spice Zaatar, and everyone on the team loved the sound of it even though it was originally a joke.", "finder_name": "Isabel Light", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.054148 N", "found_GPS_long": "118.433925 W", "found_year": 2021, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Location: an urban garden on Temple grounds.\r\nPlant diversity in the surrounding area was very great, small palm trees, assuming some types of ferns, many types of flowers. \r\nTaken from soil directly next to a suspected fern (see image). The soil was dry and fine, it had rained an hour prior to sample collection. \r\nDepth from which sample was taken: 12 cm\r\nAir temperature: 71°C\r\n\r\nAL Quarter and Lab section: F21-1A\r\nInstructor: Amanda Freise; Ana Garcia Vedrenne\r\nTeaching Assistant: Dominic Garza \r\nUndergraduate Assistant(s): Jennifer Wang\r\n\r\nTeam Name: Unphaged\r\nTeam Members: Daria Di Blasi, Brianna Empson, Maisam Ghannam, and Isabel Light", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "4-5 mm diameter, bullseye, transparent, smooth edges, irregular shaped circles, three rings of varying transparency. \r\n\r\nDiameter following first isolation was observed to be 10mm. After performing plaque assay for purification, the diameter was observed to be only 4-5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaatar_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zaatar_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaatar_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-18T12:53:22-05:00", "date_modified": "2022-03-16T11:02:15-04:00" }, { "phage_name": "Zabelle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was our two names together (Isabelle and Zach).", "finder_name": "Zach and Isabelle", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6677 N", "found_GPS_long": "117.400433 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil we used was damp and grassy. It was the month of February so it was still cold out with a bit of snow on the ground. This caused the soil to be a bit hard, and we collected our samples on a grassy field. It was sunny out when we collected", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "our plaques were clear and they averaged around 1mm in size which is really small", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zabelle_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zabelle_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T09:13:54-04:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "Zabiza", "old_names": "Joline", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zachery Middleton", "found_city": "Richmond", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.54574 N", "found_GPS_long": "77.45141 W", "found_year": 2023, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-02-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 11874, "finishing_reactions": 0, "genome_length": 56117, "gcpercent": "66.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zabiza_CompleteNotes.txt", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zabiza_Minimal_Final_wg6ATIE.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zabiza_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zabiza_CoverSheet.docx", "submitted_annotation_date": "2024-09-23T22:03:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zabiza.gbf", "qced_genbank_file_date": "2024-09-23T22:03:32-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ362688", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zabiza_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zabiza_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zabiza.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T15:21:20-05:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Zaboo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A childhood memory ", "finder_name": "Charles Wenzel and Jack Turner", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667074 N", "found_GPS_long": "117.403 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "It was a sunny day and 28 degrees Celsius. ", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Titer: 2.1X10^10\r\n\r\nPlaques: 3-4 mm in diameter ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaboo_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zaboo_thumbnail.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-07T12:37:41-05:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Zacbro", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zacbro was my gamer username I have been using since I was in 5th grade.", "finder_name": "Zaky El-Nachef", "found_city": "Birmingham", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.5517 N", "found_GPS_long": "83.2275 W", "found_year": 2023, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": null, "discovery_notes": "Sunny, near water, in shady area, wet soil", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zacbro_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zacbro_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T09:26:46-05:00", "date_modified": "2024-06-11T22:28:23-04:00" }, { "phage_name": "Zacgina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The naming of the phages comes from the names of its discoverers, Gina Pham\r\nand Zachary Selvidge.", "finder_name": "Zachary Selvidge and Gina Pham", "found_city": "Oklahoma City", "found_state": "OK", "found_country": "USA", "found_GPS_lat": "35.502615 N", "found_GPS_long": "97.576452 W", "found_year": 2020, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Dry soil full of organic matter. Top soil collected at 73 degrees Fahrenheit.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque from this phage is small with rough borders. The plaques are clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zacgina_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zacgina_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zacgina_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-02T12:22:34-05:00", "date_modified": "2021-05-25T13:14:23-04:00" }, { "phage_name": "Zach", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage is from my dog, Zach.", "finder_name": "Thomas Buerkert", "found_city": "Birdsboro", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.307 N", "found_GPS_long": "75.836 W", "found_year": 2014, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Soil was collected from the periphery of a forested area, with various shrubs and decomposing tree trunks in the immediate vicinity. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques range from diameters of about 0.5 mm to 4 mm. Plaques with no apparent turbidity have been obtained; however, the dominating plaque morphology is turbid. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage was found to be 100% identical to Jesse. Since both phages were found at the same institution, we assume that these are not truly distinct phages.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zach_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zach_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zach_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zach_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zach_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-26T12:20:13-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "Zachary07", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after my youngest brother who passed away when he was 7.", "finder_name": "Lwaxana Simon", "found_city": "Denton", "found_state": "TX", "found_country": "US", "found_GPS_lat": "33.212784 N", "found_GPS_long": "97.14818 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The sample was found on February 4th,2020 near the General Academic Building at the University of North Texas. Time was 6:26pm and the temperature was 42°F. Soil was dark drown, moist, and had a clay like texture.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaques are clear and round. Most of them are different sizes, but they are all typically very small", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-30T09:02:53-04:00", "date_modified": "2021-01-28T11:04:08-05:00" }, { "phage_name": "Zacharylane", "old_names": "ZachLaneBryan", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after legendary country singer Zachary Lane Bryan.", "finder_name": "Leah Rozeboom", "found_city": "Hull", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "43.22542 N", "found_GPS_long": "96.09938 W", "found_year": 2023, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "Discovered at the location of a recently uncovered buried outhouse.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear center and well-defined edges, 1-1.5mm in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "terrae", "strain_name": "NRRL B-24214", "strain_species": { "id": 47, "genus": "Microbacterium", "species_name": "terrae", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 47, "genus": "Microbacterium", "species_name": "terrae", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-09T09:10:01-05:00", "date_modified": "2024-02-25T15:28:19-05:00" }, { "phage_name": "ZachAttack", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zachary D Simon", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.991399 N", "found_GPS_long": "122.060867 W", "found_year": 2009, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "Found beneath shrubbery around a sprinkler head by the College 8 dormitories on the UCSC campus.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear small center dot with opaque halo surrounding center and turbid halo in a concentric circle surrounding. After 48 hours of incubation. 37? C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZachAttack_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/ZachAttack_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/ZachAttack_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZachAttack_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZachAttack_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "ZacherSlacker", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Just a high school nickname.", "finder_name": "Grant Zacher", "found_city": "Dahlonega", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.527862 N", "found_GPS_long": "83.987678 W", "found_year": 2016, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfNorthGeorgia.jpg", "institution_url": "http://www.ung.edu/", "institution_city": "Dahlonega", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "34.527800", "institution_longitude": "-83.98442" }, "enriched_sample": true, "discovery_notes": "The sample can be described as a rich, dark soil sample. It was collected from a community garden located behind a residential building on a warm, sunny afternoon in direct sunlight. (Wednesday, 9/14/2016, 12:15 PM, 86 degrees F and sunny) ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": " Individual plaques are 1mm in diameter, very clear, and faded margins/rings extend from each plaque in a 10mm radius.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZacherSlacker_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/ZacherSlacker_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZacherSlacker_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/ZacherSlacker_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-11-16T22:11:31-05:00", "date_modified": "2020-09-17T14:07:04-04:00" }, { "phage_name": "Zachery", "old_names": "Jaime", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name of one of the students who worked on this phage", "finder_name": "Zach Velasco", "found_city": "Superior", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "39.92 N", "found_GPS_long": "105.16 E", "found_year": 2018, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": false, "discovery_notes": "The soil was damp from snowfall, it was 2.8 degrees Celsius. The soil sample was taken in an area with plant growth and debris", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear, round, plaques that are about 2 millimeters apart from each other", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zachery_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zachery_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zachery_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zachery_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zachery_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-04-23T20:40:40-04:00", "date_modified": "2020-09-17T14:10:41-04:00" }, { "phage_name": "Zacknotzachary", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zack Thomas", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.921593 N", "found_GPS_long": "77.019141 E", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-31T20:26:25-04:00", "date_modified": "2020-09-17T14:08:23-04:00" }, { "phage_name": "Zada", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ali Zamat", "found_city": "Dearborn", "found_state": "MI", "found_country": "", "found_GPS_lat": "42.346017 N", "found_GPS_long": "83.184449 W", "found_year": 2018, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": false, "discovery_notes": "backyard under slide from playset", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA1" }, "morphotype": "SIPHO", "plaque_notes": "small round lytic", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-12-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 841, "finishing_reactions": 0, "genome_length": 41814, "gcpercent": "63.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 64, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zada_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zada_Minimal_Final_ZRIpjSW.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zada_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zada_CoverSheet.pdf", "submitted_annotation_date": "2020-03-30T10:34:54-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zada.flat.txt", "qced_genbank_file_date": "2020-03-30T10:34:54-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT310856", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zada.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-30T16:56:00-05:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Zadelle", "old_names": "Adelle", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose Zadelle because it's easy to pronounce and remember.", "finder_name": "Catalina Schuyler and Julia Renz", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "39.926498 N", "found_GPS_long": "105.158082 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Phage was discovered on the campus of University of Colorado Boulder underneath a tree. Outside temperature was 20.5℃.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage is temperate, around 2.5 mm in diameter with a halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zadelle_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zadelle_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zadelle_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-30T09:04:07-05:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "Zadow", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after two of our favorite dogs. ", "finder_name": "Faith Vander Galien and Bailey Braaksma", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984472 N", "found_GPS_long": "92.754867 E", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Compost pile in an alley next to a garage; new pile, not well broken down yet; kitchen and garden waste west of garage.\r\nWe got this phage from Professor Klyczek, as both of ours yielded no phages. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were originally small to medium and clear cut. Some were cloudy and others were clear. We only experimented on the clear plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zadow_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zadow_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zadow_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zadow_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-21T14:06:28-05:00", "date_modified": "2020-09-17T14:07:27-04:00" }, { "phage_name": "Zaeh", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Hannah Sagastegui", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "CHAT", "institution_name": "Chatham University", "institution_logo": "https://phagesdb.org/media/institutions/chatham_logo_NB0QvGQ.png", "institution_url": "https://www.chatham.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.449259", "institution_longitude": "-79.925094" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-21T10:40:03-05:00", "date_modified": "2025-04-04T11:37:26-04:00" }, { "phage_name": "Zaffre", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zaffre is a shade of blue that we all liked.", "finder_name": "M. Quattrucci, P. Vo, T. Weir, V. Amorese", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.3889 N", "found_GPS_long": "72.53205 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "It was found near a gym building where the soil was hard and firm. This was also near the sidewalk.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque has a diameter of 0.5-3 mm, is halo shaped with a clear border and a yellow center.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-31T12:13:58-04:00", "date_modified": "2025-03-31T12:13:58-04:00" }, { "phage_name": "ZAG12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage comes from my initials plus the year it was discovered.", "finder_name": "Zane Graper", "found_city": "Fort Branch", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "38.270083 N", "found_GPS_long": "87.501514 W", "found_year": 2012, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "The sample from which this plaque was obtained was found on September 3, 2012. It was obtained on a morning after a night time rain. The soil was damp, but not completely saturated. The sample was taken in my hometown backyard near a location where a tree existed but was cut down.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Electron microscope analysis proved unsuccessful. Bacteriophage heads where found, but no phages with tails where found during the trial.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZAG12_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZAG12_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-07T15:31:47-05:00", "date_modified": "2017-09-12T10:27:28-04:00" }, { "phage_name": "Zag19", "old_names": "DirtyDiana", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lindey English and Emily Gonzalez", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.4 N", "found_GPS_long": "117.24 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Creates clear, round plaques of about 2-3 mm in diameter", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear, round plaques of about 2-3 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zag19_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zag19_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zag19_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zag19_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-04-14T14:15:36-04:00", "date_modified": "2020-09-17T14:07:41-04:00" }, { "phage_name": "Zag25", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We go to Gonzaga University and we are class of 2025", "finder_name": "Shevonne and Clare", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.668075 N", "found_GPS_long": "117.400708 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "A tree base near DeSmet hall at Gonzaga University", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "A circular capsid with a short tail", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zag25_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zag25_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/image_67182081.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/A7_Box_2.jpeg", "dnam_file": null, "date_added": "2021-12-01T13:26:02-05:00", "date_modified": "2022-03-16T11:02:44-04:00" }, { "phage_name": "Zaga", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Gonzaga fans", "finder_name": "Julia Panelli and Elaine Frank", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.6669 N", "found_GPS_long": "117.4028 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear, small, round, and similar in size. Avg 2 mm in length", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaga_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zaga_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaga_Plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaga_EM.png", "dnam_file": null, "date_added": "2018-04-23T20:21:16-04:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "Zagalicious", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We wanted to honor the University that we attend, as well as have a fun twist on a favorite song.", "finder_name": "Ava Mazzilli, Vivian Wang", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66757 N", "found_GPS_long": "117.40503 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected from soil collected beneath a tree. It was collected in January and there was a little bit of snow on the ground in close areas. The soil was hard, but not frozen.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of our plaque is small 1-10cm plaques, roughly circular in shape, with very clear defined borders.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagalicious_Plaque_naWgQGy.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zagalicious_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagalicious_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-19T08:12:14-04:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "Zagaroni", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is inspired by Gonzaga thus the name Zagaroni. Go zags!", "finder_name": "Kaila Rorabaugh, Samantha Ferguson", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667263 N", "found_GPS_long": "117.402967 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Our phage was discovered in the soil under a tree outside of Hughes science building at Gonzaga.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "various sizes of circular plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagaroni_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zagaroni_EMPic.jpg", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Zagaroni_VirtualDigest.png", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagaroni_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zagaroni_EM.png", "dnam_file": null, "date_added": "2018-04-23T20:22:30-04:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "Zagary", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "To represent that the name was found and discovered by Gonzaga students on the Gonzaga University campus", "finder_name": "Zoe, Ethan, Callie", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.667024 N", "found_GPS_long": "117.402926 E", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Our phage was donated by another group taking the biol 105 lab course", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small plaques (around 2mm at the largest), completely clear with clean edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagary_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/thumbnail_toXcQ2I.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-03T14:13:26-05:00", "date_modified": "2022-03-16T11:02:44-04:00" }, { "phage_name": "ZagBy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Peters, Lee", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6649 N", "found_GPS_long": "117.3971 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small plaques with slightly varying sizes.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagBy_Plaque_evD3GpQ.jpg", "em_file": "https://phagesdb.org/media/emPics/ZagBy_EMPic_QBPqo7N.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-18T12:46:13-05:00", "date_modified": "2022-03-16T11:02:44-04:00" }, { "phage_name": "ZagEater", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is inspired by our university and us being hungry. Therefore, we came up with ZagEater.", "finder_name": "Emma Steinhart, Madeline Wells", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66681 N", "found_GPS_long": "117.39806 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "The sample of found in a dirt patch near a garden in front of the Madonna dorm. There was snow near the dirt patch and the patch was relatively soft.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques are about 1 to 2 mm in diameter and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagEater_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-06T23:09:06-04:00", "date_modified": "2024-02-25T15:28:10-05:00" }, { "phage_name": "ZagFam", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chloe Park", "found_city": "Aurora", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "39.607 N", "found_GPS_long": "104.789 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "It recently snowed, and so the soil was still a bit damp. It was also a bit chunkier. There was some grass and other things mixed in with the soil.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagFam_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZagFam_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-04-09T20:24:11-04:00", "date_modified": "2022-03-16T11:02:45-04:00" }, { "phage_name": "Zagg", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We names this phage because we go to Gonzaga University", "finder_name": "Ahnikah Rubio and Maddy Petersen", "found_city": "The Dalles", "found_state": "OR", "found_country": "United States", "found_GPS_lat": "45.58855 N", "found_GPS_long": "121.1596 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We discovered this phage from soil around a house in The Dalles, Oregon", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were circular, clear, and small", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagg_Plaque_EXhgF4p.png", "em_file": "https://phagesdb.org/media/emPics/Zagg_EMPic_dmrWz0V.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagg_EMPic_Thumb_.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-12T10:19:35-04:00", "date_modified": "2025-09-12T10:27:56-04:00" }, { "phage_name": "Zagie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage's name is Zagie, which is derived from the name Magie/Maggie and it is a reference to the term \"Zag\" since we attend Gonzaga University.", "finder_name": "Alyssa Haworth and Emma Hanson", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667367 N", "found_GPS_long": "117.402273 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We decided to use our results from our second sample: Sample 2: surfaced grass not shaded (dry, warm) Northeast of the Hughes building and on the Herak Quad.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EG", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "After performing our first attempt to begin forming phage-- using serial dilutions and plaque assay-- we received our first results:\r\nWe found phage within our petri dishes of 10^0, 10^-1, and one in 10^-2. Our 10^0 had phage only on half of the petri dish. Could it be because the dish was tilted to one side due to the table being slanted? The plate colors were a turbid yellow. 10^-1 had approximately 30 phage and was too tilted to one side. 10^-2 only had 2 phage, and after 10^-3, they were all solid with no sign of phage.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-08-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 342, "finishing_reactions": 0, "genome_length": 62442, "gcpercent": "67.0", "end_type": "TREP", "repeat_length": 204, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 109, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zagie_Minimal_Final_E9eWdJ9.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-07-25T19:49:22-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zagie_flat2.txt", "qced_genbank_file_date": "2022-07-25T19:49:22-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP068344", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagie_Plaque_3aOEeRU.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zagie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagie_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-09T08:01:40-05:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Zagman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Logan Howard, Ricci Crinci", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagman_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zagman_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zagman_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagman_Plaque_Thumb_bJ6dKE9.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zagman_EMPic_Thumb_pSbgOzC.jpg", "dnam_file": null, "date_added": "2013-12-11T17:28:05-05:00", "date_modified": "2020-09-17T14:05:35-04:00" }, { "phage_name": "Zagnation", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Decided by Loren and Sam, Go Zags!", "finder_name": "Loren Carrillo", "found_city": "Olympia", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.215338 N", "found_GPS_long": "122.432884 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Moist Soil with green grass, 2 ft. from mint plant", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1 cm, turbid, round plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagnation_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zagnation_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zagnation_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagnation_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zagnation_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-04-05T22:25:22-04:00", "date_modified": "2020-09-17T14:07:41-04:00" }, { "phage_name": "ZagPhlash", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first portion, Zag, comes from the school name, Gonzaga university. The second part, Phlash, is a portmanteau of Phage and flash, as we wanted something snappy while having some wordplay.", "finder_name": "Halle Mudaliar, Aidan Wagstaff", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "47.665788 N", "found_GPS_long": "117.389972 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage was found during our second attempt to find a successful sample, found close to the University's main sports arena.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T15:17:01-04:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "Zagriculture", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "@zagriculture on instagram", "finder_name": "Abigail Chen, Kaylie Ho", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This sample was collected in the soil by the Rosaur building on Gonzaga's campus, near the side door closest to Welch Residence Hall. It was snowing during the time of collection, so we found a patch of soil that was not covered in snow and scooped up the sample.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are quite large in diameter > 1.5 inches, and when there are many plaques on a plate they bleed together to form a mega-plaque. Apparent halo around plaque", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagriculture_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagriculture_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zagriculture_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-05-07T22:17:22-04:00", "date_modified": "2021-01-28T11:04:23-05:00" }, { "phage_name": "ZagRose", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named ZagRose after the rose bush we found our phage under at Gonzaga University. We combined Gonzaga and Rose to get ZagRose.", "finder_name": "Kaitlin Fernandez and Julianna Olde", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66796 N", "found_GPS_long": "117.403275 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found ZagRose during the winter in frozen soil that was around snow. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are circular, 3 mm in diameter, and a little cloudy. ", "lysogeny_notes": "Our phage is temperate due to the cloudy morphology of the plaques. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagRose_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/ZagRose_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/ZagRose_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZagRose_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/ZagRose_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-04-13T14:46:44-04:00", "date_modified": "2020-09-17T14:09:06-04:00" }, { "phage_name": "Zags", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kevin Brandecker and Mitchel Schelling", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.664167 N", "found_GPS_long": "117.403056 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from 10cm below the ground. The soil was taken moist and a dark brown color. It was taken from near the roots of a unknown type of bush. There were pieces of bark and grass in our sample. The weight of our sample was 1.056g.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Zag's formed mostly clear plaques that were 0.5 cm in diameter and almost perfect circles.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zags_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zags_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zags_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zags_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zags_EMPic_Thumb.png", "dnam_file": null, "date_added": "2014-11-03T11:20:26-05:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Zagscal", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My partner and I chose Zagscal as the name for our Bacteriophage as we both love the sidekick character Pascal in the Disney Movie Tangled. To make it more unique and fit each of our personalities better we added Zag to the first part of the name.", "finder_name": "Aliyah Simpson, Bella Whitehead", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6678 N", "found_GPS_long": "117.4038 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Our plaques are small and circular with smoothed haloed edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagscal_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zagscal_EMPic_PkHuv9w.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagscal_EMPic_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T10:37:04-04:00", "date_modified": "2025-09-12T10:27:08-04:00" }, { "phage_name": "ZagsEatZags", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from the saying at Gonzaga among students of “Zags help Zags.”\r\n\r\n***Other student collaborators include Anthony Senffner and Emily Schwartz.", "finder_name": "Claire Cooney, Jake Snitily", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6686 N", "found_GPS_long": "117.4008 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "It was a cloudy, humid day of 78°F and it started raining as we collected the environmental samples. The sample was collected from a raised bed in a Gonzaga community garden. The dirt was taken from directly underneath the plant from the top soil.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were clear and had larger concentric circles making up the outer rings to each plaque. Throughout the serial dilutions, there were usually 20-200 plaques on the 10^-6 dilution factor plate. The calculated titer was 3.5x10^9 pfu/ml. A plaque was measured to have a 5mm diameter and 13mm diameter for the outer ring.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagsEatZags_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/ZagsEatZags_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_0634.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/IMG_0635.jpeg", "dnam_file": null, "date_added": "2023-11-16T10:22:42-05:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "ZagsGoliath", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The zags portion of the name came from the nickname for Gonzaga University students and the Goliath part was chosen because it sounds powerful.", "finder_name": "Aspen Zusy and Hazel Murphy", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "47.66678 N", "found_GPS_long": "117.403 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found outside of Hughes Hall at Gonzaga University, by a rock to the left of the building. Took soil from the surface with some moss/grass growth and soil was moist.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "-Small clear, defined plaques no greater than 1 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagsGoliath_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/ZagsGoliath_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/thumbnail_ZuMu-plaque-thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/thumbnail_ZuMu-TEM-thumb1.png", "dnam_file": null, "date_added": "2025-02-18T16:06:34-05:00", "date_modified": "2025-05-07T13:24:11-04:00" }, { "phage_name": "ZagsHelpZags", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of our phage came from a very popular slogan from Gonzaga University \"Zags help zags.\" Which means that Gonzaga students help all other students, alumni, and anyone else connected to Gonzaga.", "finder_name": "Skylar Jimenez and Cassidy Sebastian", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.665178 N", "found_GPS_long": "117.39775 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Our phage is from a flowerbed in front of Coughlin Hall on Gonzaga University's Campus. The soil that we collected our phage from was near concrete and right next to flowers. The dirt was very dry and we took 15 ml of the dirt as our first sample. ", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques from our phage are clear and circular in shape. Typically their diameter ranges from 2mm-6mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagsHelpZags_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/ZagsHelpZags_EMPic_4kRGJqS.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZagsHelpZags_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/ZagsHelpZags.png", "dnam_file": null, "date_added": "2018-11-08T21:53:28-05:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "ZagSpike", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Go to Gonzaga University, home of the Zags. Spike is the name of our mascot.", "finder_name": "Grace Reins, Kate DeLorme", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666667 N", "found_GPS_long": "117.403056 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "Dug the sample from the ground behind the science building at Gonzaga University called Hughes. Sample was dirt, but not enriched soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Plaque with dilution 10^-5. 10 plaques visible on agar plate. Titer is 1.4x10^8.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZagSpike_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/ZagSpike_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/ZagSpike_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/GRKDPlaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZagSpike_EM.png", "dnam_file": null, "date_added": "2018-04-25T14:00:20-04:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "Zagtastic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided to name out phage Zagtastic. We wanted to make the name personal and relate to our school because our research represents our school, Gonzaga. We also wanted to name our phage something funny and unique so we twisted the word \"zag\" into \"Zagatastic.\" We originally had the name Zagalicious however, this name got taken before we were able to input it so we just decided to change the ending of the name.", "finder_name": "Ella Osborne and Abby Brogan", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The first thing we did to find our phage was to collect three samples of soil from around our college campus. These samples went through an enrichment process to amplify the bacteria phages if any at all. Once the enrichment process was complete, we conducted a spot test to test for the presence of a phage in each of the samples. Our results demonstrated that our sample obtained from the coordinates 47.66734°N 117.40092°W demonstrated the presence of a phage as the bacteria in a portion of the lawn had been killed and a clearing appeared. This is the phage that was used throughout the rest of our experiments.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Zagtastic is cloudy along the edges of the plaques and has less defined edges. This is because Zagtastic may a temperate phage which produces cloudy or turbid plaques. The average size of Zagtastic is 2.9 mm. Zagatastic has plaques with an average of 2.9 mm in width. Zagatastic has about 40 plaques present on the plate. The sizes of Zagtastic vary, producing a variety of sizes all ranging from small to medium.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagtastic_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zagtastic_Plaque_Thumb.jpg", "dnam_file": null, "date_added": "2023-04-27T14:40:51-04:00", "date_modified": "2025-09-12T10:29:33-04:00" }, { "phage_name": "Zagteria", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zags + bacteria = Zagteria", "finder_name": "Jakob Neufeld and Chandra Munger", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": false, "discovery_notes": "Found in water from edge of lake McArthur.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "2.0mm plaques with bulls-eye appearance (turbid near the outside while clear in the center). Not very viral, takes 5 days to form any visible plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zagteria_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zagteria_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zagteria_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zagteria_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zagteria_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-05-01T22:17:21-04:00", "date_modified": "2020-09-17T14:07:41-04:00" }, { "phage_name": "Zagup", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Danielle Spellacy and Carter Odean", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.666023 N", "found_GPS_long": "117.403853 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zagup_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zagup_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zagup_EMPic.jpg", "dnam_file": null, "date_added": "2015-11-06T11:16:14-05:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "ZagusCampus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maria Braatz", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.665954 N", "found_GPS_long": "117.405712 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected from frozen soil underneath a tree.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-04-15T15:06:22-04:00", "date_modified": "2022-03-16T11:02:45-04:00" }, { "phage_name": "Zaheer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from a TV show called The Legend of Korra. The phage was named after a villian in season 3.", "finder_name": "Thomas Zellmer", "found_city": "River Falls", "found_state": "WI", "found_country": "United States of America", "found_GPS_lat": "44.8453 N", "found_GPS_long": "92.626 W", "found_year": 2020, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The phage was discovered in River Falls WI under a tree in pay lot 3 of University of Wisconsin- River Falls near row 6", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "FF", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology is small, clear and doesn't contain any halos", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 910, "finishing_reactions": 0, "genome_length": 42874, "gcpercent": "65.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "TCCGCCGCGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zaheer_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-05-03T15:02:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zaheer_flat.txt", "qced_genbank_file_date": "2021-05-03T15:02:08-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ150784", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaheer_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zaheer_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zaheer_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zaheer.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaheer_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaheer_EMPic_Thumb.png", "dnam_file": null, "date_added": "2020-12-08T17:40:18-05:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Zahiage", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the dicoverer.", "finder_name": "Zahida Salarzai", "found_city": "Emmitsburg", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.681155 N", "found_GPS_long": "77.352085 W", "found_year": 2022, "p_institution": { "institution_code": "MMYU", "institution_name": "Mount St. Mary’s University", "institution_logo": "https://phagesdb.org/media/institutions/msmu-logo.png", "institution_url": "https://msmary.edu/", "institution_city": "Emmitsburg", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "A soil sample was collected in September from the Mount St. Mary's University campus. The phage was isolated from soil by enrichment culturing at 25°C. The soil was from under a tree , about 2-3 \r\ncm deep, and it was shaded from sun exposure. The soil was dry and a light brown color soil.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque diameter is 2mm. Plaques are clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zahiage_EMPic.html", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-01-12T11:52:13-05:00", "date_modified": "2024-10-08T10:20:10-04:00" }, { "phage_name": "Zahlia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Andrew Amdahl", "found_city": "Edcouch", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "26.34804 N", "found_GPS_long": "97.98116 W", "found_year": 2024, "p_institution": { "institution_code": "STXC", "institution_name": "South Texas College", "institution_logo": "https://phagesdb.org/media/institutions/south_texas.jpg", "institution_url": "", "institution_city": "McAllen", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil was somewhat wet with an average amount of organic matter near weeds. It was also collected less than half an inch below the surface.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 7466, "finishing_reactions": 0, "genome_length": 17481, "gcpercent": "68.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zahlia_CompleteNotes.pdf", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zahlia_Minimal_Final_Chlx36b.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zahlia_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zahlia_CoverSheet.docx", "submitted_annotation_date": "2025-06-12T14:28:20-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zahlia_flat.txt", "qced_genbank_file_date": "2025-06-12T14:28:20-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV876921", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zahlia.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T12:34:55-05:00", "date_modified": "2025-09-13T06:42:24-04:00" }, { "phage_name": "Zahrah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage \"Zahrah.\" Zahrah means in English flower.", "finder_name": "Hessah Alzaid", "found_city": "Flower Mound", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.01074 N", "found_GPS_long": "97.072118 W", "found_year": 2016, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "This phage from soil sample that collected in March. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "toxytricini", "strain_name": "NRRL B-5426", "strain_species": { "id": 24, "genus": "Streptomyces", "species_name": "toxytricini", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Streptomyces_toxytricini" }, "ATCC_ID": "19813", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 24, "genus": "Streptomyces", "species_name": "toxytricini", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Streptomyces_toxytricini" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-01T13:02:47-05:00", "date_modified": "2020-09-17T14:07:24-04:00" }, { "phage_name": "Zaid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name I chose for my phage is inspired by my name. It is because my name \"Zaid\" rhymes with \"Phage.\"", "finder_name": "Zaid Asmar", "found_city": "Cullowhee", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "35.311863 N", "found_GPS_long": "83.183555 W", "found_year": 2021, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": true, "discovery_notes": "This is a soil sample I found right outside our science building.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaid_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zaid_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaid_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-19T11:56:00-05:00", "date_modified": "2025-08-28T10:51:02-04:00" }, { "phage_name": "Zaidalyssa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combined the names of the discovering researchers.", "finder_name": "Zaida and Alyssa", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666667 N", "found_GPS_long": "117.403056 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Discovered in the garden near the Gonzaga Paccar building.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "2mm plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaidalyssa_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaidalyssa_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaidalyssa_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaidalyssa_EM.png", "dnam_file": null, "date_added": "2019-04-26T02:39:50-04:00", "date_modified": "2020-09-17T14:11:55-04:00" }, { "phage_name": "Zaider", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Z-Stands for Zeus\r\na-Is a nod to one of my idols\r\nider-I'm really obsessed with telomerase and Carol Greider co-discovered telomerase with Elizabeth Blackburn", "finder_name": "Emmanuel Chidiebere Osikpa", "found_city": "Baltiomre", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.9 N", "found_GPS_long": "76.619892 W", "found_year": 2015, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Found outside under a tree located near the Brody Learning Commons. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "-Medium sized\r\n-Clear with defined edges", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1234, "finishing_reactions": 0, "genome_length": 68983, "gcpercent": "66.6", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 103, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zaider_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-11-19T13:21:49-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zaider.gbf", "qced_genbank_file_date": "2018-11-19T13:21:49-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK279895", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zaider.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zaider.dnam5", "date_added": "2015-12-01T10:10:49-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaideros", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "phage name is a combination of my son's name and the Greek god of love so he knows his dad always loves him!", "finder_name": "Austin De La Garza", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "27.711944 N", "found_GPS_long": "97.401944 W", "found_year": 2021, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "soil condition; mostly dry with sporadic moist areas (sample taken from the moist area) \r\n\r\nhumidity; 66% \r\n\r\nseveral other plants and many types of insects were noted in close proximity to the sample origin location.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "phage displaying lytic morphology \r\n\r\nplaques are 2mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaideros_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaideros_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zaideros_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-07-26T12:23:54-04:00", "date_modified": "2021-08-18T14:23:13-04:00" }, { "phage_name": "Zainub", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Zainub after my girlfriend and love of my life. I could think of no better thing to do than to commemorate my love and devotion by naming something that will be seen by people for the foreseeable future.", "finder_name": "Jack Hatcher", "found_city": "Benbrook", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "32.67099 N", "found_GPS_long": "97.50494 W", "found_year": 2023, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Collected the soil sample in Benbrook Texas on August 22, 2023. It was Hot and Dry outside with minimal wind. The temperature at the time was 100 degrees Fahrenheit with 34% humidity. The soil itself was moist, cool, and clayish with lots of worms. Sample was collected from underneath a stump I use to chop wood.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD2" }, "morphotype": "", "plaque_notes": "My plaques were very small and rarely grew more than half a millimeter in diameter. They are completely clear and extremely circular.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 481, "finishing_reactions": 0, "genome_length": 51761, "gcpercent": "67.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGCTACGTCTT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zainub_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-06-24T21:17:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zainub_flat.txt", "qced_genbank_file_date": "2024-06-24T21:17:40-04:00", "isolation_host": { "genus": "Streptomyces", "species": "baarnensis", "strain_name": "NRRL B-2842", "strain_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978860", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zainub_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zainub.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-30T09:05:10-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zajo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combined names of founders", "finder_name": "Zach Sell", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "0.46 N", "found_GPS_long": "0.13 E", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": null, "discovery_notes": "Rainy day and actual coordinates found are 46°43'44.2\"N 117°09'47.8\"W", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-06T07:41:38-05:00", "date_modified": "2020-09-17T14:08:59-04:00" }, { "phage_name": "Zaka", "old_names": "Phoenix", "program": null, "naming_notes": "Previously named Phoenix. Renamed Zaka in May 2013.", "finder_name": "Bettadapur A, Dailey K, Maloo Z, Rangoola A", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.0522 N", "found_GPS_long": "118.2428 W", "found_year": 2011, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil sample collected by Akhila Bettadapur from a planter outside an apartment complex at 403 Landfair, Los Angeles, CA 90024\r\n\r\nPhage isolation performed by Akhila Bettadapur, Katie Dailey, Zehra Maloo, and Anmol Rangoola (fall 2011). DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA) and confirmed by Daniel Russell (University of Pittsburgh). Genome annotation performed by Debbie Jacobs-Sera (summer 2013, University of Pittsburgh). ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A6" }, "morphotype": "SIPHO", "plaque_notes": "Turbid plaques with average diameter of 10 mm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-05-13", "seq_facility": { "short_name": "UCLA", "facility_name": "The UCLA Genotyping and Sequencing Core", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genoseq.ucla.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 282, "finishing_reactions": 0, "genome_length": 52122, "gcpercent": "61.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KF560334", "refseq_accession": "NC_022985", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaka_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zaka_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zaka.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaka_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaka_EMPic_Thumb_14z7hih.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zaka_FP.dnam5", "date_added": "2013-05-26T22:04:10-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zakai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage comes from the name Zakai which means pure and innocent.", "finder_name": "Zakai Meghoo-Peddie", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.748116 N", "found_GPS_long": "84.414223 W", "found_year": 2015, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "collected from a rocky and dry type of soil on a very warm and dry day. Using cluster specific PCR primers indicated that this is a Cluster A phage.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L2" }, "morphotype": "SIPHO", "plaque_notes": "Clear and round plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-28", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1989, "finishing_reactions": 0, "genome_length": 76363, "gcpercent": "58.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 132, "num_tRNAs": 14, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zakai_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zakai_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zakai_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zakai_CoverSheet.pdf", "submitted_annotation_date": "2016-05-26T21:37:31-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/ZAKAI_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": { "title": "Genome Sequences of Four Subcluster L2 Mycobacterium Phages, Finemlucis, Miley16, Wilder, and Zakai", "abstract": "Four subcluster L2 mycobacteriophages, Finemlucis, Miley16, Wilder, and Zakai, that infect Mycobacterium smegmatis mc2155 were isolated. The four phages are closely related to each other and code for 12 to 14 tRNAs and 130 to 132 putative protein-coding genes, including tyrosine integrases, cro, immunity repressors, and excise genes involved in the establishment of lysogeny.", "full_author_list": "Herren CD, Peister A, Breton TS, Hill MS, Anderson MS, Chang AW, Klein SB, Thornton MM, Vars SJ, Wagner KE, Wiebe PL, Williams TG, Yanez CP, Ackles JM, Artis D, Brazier RJ, Bryant RJ, Callwood KO, Carter IH, DeBose CL, Edwards CD, Ezemba IC, Joaquin RR, Meghoo-Peddie ZM, Meghoo-Peddie ZG, Moore RW, Smith CE, Turner AJ, Vorters RL, Wider JJ, Krout LL, Comis MS, Davick MJ, Michaud EE, Shevenell BE, Stanley SE, Frank CI, Montgomery JR, Blumer LS, Doty JA, Smith-Caldas M, Pope WH, Cresawn SG, Russell DA, Garlena RA, Jacobs-Sera D, Hatfull GF.", "short_author_list": "Herren et al.", "article_url": "", "journal": "Genome Announcements", "journal_volume": "5", "journal_issue": "", "journal_pages": "", "pub_year": "2017", "pubmed_id": "29146853" }, "in_genbank": true, "genbank_accession": "KX580961", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zakai.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zakai_CompleteNotes_with_blast_7-8.dnam5", "date_added": "2015-12-06T18:37:42-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zakhe101", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The name of this phage comes directly to my own name Zakhe meaning 'make'. This phage is morphologically different compare to other phages that were isolated as it had a prolate head and tail. the code 101 means that it usually have a spot that include plaques inside a rare feacture in the immunity test. Therefore its name is Zakhe101", "finder_name": "Zakhe M Mcunu", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.817371 S", "found_GPS_long": "30.942245 E", "found_year": 2014, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found near the laboratoy soil, the soil that it was extracted from was moist and dark. The colonies were so small and grow after a 24hr incubation at 37C. It is location 3A on the lysate prepared", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "O", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were a circular shape. the head of the phage is prolate similar to corndog and Dylan phages. From the digest picture it can be seen against Da Vinci on position 2 that it forms a clear spot.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-01-29", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 215, "finishing_reactions": 0, "genome_length": 69653, "gcpercent": "65.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "GTGT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 123, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KT281796", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zakhe101_Plaque_1.JPG", "em_file": "https://phagesdb.org/media/emPics/Zakhe101_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zakhe101_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zakhe101.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zakhe101_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zakhe101_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Zakhe101.dnam5", "date_added": "2014-07-30T14:59:06-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zakhe102", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The name of this phage is Zakhe 102 because it was found were Zakhe 101 was isolated but it has some slight differences to it as it forms halo plaques and it is big compared to zakhe 101.", "finder_name": "Zakhe M Mcunu", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.817371 S", "found_GPS_long": "30.942245 E", "found_year": 2014, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found were Zakhe 101 was isolated but its plaques were big and halo, the soil was miost and dark. it is noted as location 3B on the lysate prepared to be sequenced.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were big forming halo after 48 hrs,there is something very intresting about this phage as its properties are slightly rare. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zakhe102_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zakhe102_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-07-30T14:58:43-04:00", "date_modified": "2020-07-28T16:03:24-04:00" }, { "phage_name": "Zakinley", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of our two last names.", "finder_name": "Maretta Zafuto and Lexie McKinley", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66632 N", "found_GPS_long": "117.403008 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Soil collected was dry, grainy and light brown in color. It was collected on the Gonzaga Campus.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage formed round clear plaques, with clean edges. Plaques were small in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zakinley_Plaque_iR1CV39.jpg", "em_file": "https://phagesdb.org/media/emPics/Zakinley_EMPic_AhXgsuC.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zakinley_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/TEM_Zakinley.png", "dnam_file": null, "date_added": "2019-11-14T15:26:45-05:00", "date_modified": "2020-09-17T14:11:55-04:00" }, { "phage_name": "Zaks", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We used our initials to make a name.", "finder_name": "Zachary Klockner, Alexis Schuettke", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667289 N", "found_GPS_long": "117.404782 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found the sample on the edge of a garden bed right next to Jepson Hall at Gonzaga University. ", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "The plaques were small to medium in size and varied throughout. They were also clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/20181006_104340-2.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-08T22:53:01-05:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "Zale", "old_names": "Milley", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's name after the place the phage was discovered. ", "finder_name": "Bhumi Patel", "found_city": "Fairless Hills", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.162616 N", "found_GPS_long": "74.804292 W", "found_year": 2017, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "The sample was collected nearly the Falls Township lake. ", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zale_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zale_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zale_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zale_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-06-08T22:15:41-04:00", "date_modified": "2020-09-17T14:09:15-04:00" }, { "phage_name": "Zalkecks", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for the phage is some combination of the 1st names of those who discovered it.", "finder_name": "Alex Stanley and Zack Rice", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.425096 N", "found_GPS_long": "86.908015 W", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "Outside of a local bagel shop near foot and car traffic in an urban setting.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "cloudy round with smooth edges", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 66, "finishing_reactions": 0, "genome_length": 154764, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 233, "num_tRNAs": 32, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zalkecks_CompleteNotes_sx9TPou.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zalkecks_Minimal_Final_OmICuqb.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zalkecks_Authors_nx4iGh5.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zalkecks_CoverSheet_9a3xIjs.pdf", "submitted_annotation_date": "2018-08-28T20:37:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zalkecks_Flat.txt", "qced_genbank_file_date": "2018-08-28T20:37:08-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH825713", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zalkecks_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zalkecks_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zalkecks.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zalkecks_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T23:07:48-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaloudek", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage is derived from my own last name. I chose to name it this because I love my last name. It us unique and interesting and very uncommon. ", "finder_name": "Kristina Zaloudek", "found_city": "Farmington", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.669 N", "found_GPS_long": "70.13 W", "found_year": 2017, "p_institution": { "institution_code": "MEFA", "institution_name": "University of Maine, Farmington", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMaineFarmington.jpg", "institution_url": "http://www.umf.maine.edu/", "institution_city": "Farmington", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.668218", "institution_longitude": "-70.14825" }, "enriched_sample": true, "discovery_notes": "This phage was found on September 13, 2017 in Farmington, Maine between a layer of old mulch and soil in the early afternoon near a hydrangea tree located between Ricker Hall and Dearborn Gymnasium in Farmington, Maine. The weather was sunny with a small breeze and in the mid to high 60's. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-07T11:33:43-05:00", "date_modified": "2020-09-17T14:08:05-04:00" }, { "phage_name": "Zama", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "It is my name that i Love so much as it means \"TRY\" in english. Whivh motivates me to not give up but try till the end.", "finder_name": "Zama", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The soil sample was enriched with media and plated onto the plates. The plaques were observed and the dilurions were made to purify the sample. Further to that the purified plates were flooded with phage buffer to make the lysate. The Lysate sample was purified by dilutions and plated out.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were small and clear zones were easily distingushable, assuming that it is a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-10T11:38:16-04:00", "date_modified": "2017-09-24T13:26:06-04:00" }, { "phage_name": "Zamasu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Dragon Ball Z", "finder_name": "Ben Byrum", "found_city": "Manhattan", "found_state": "KS", "found_country": "United States", "found_GPS_lat": "39.191944 N", "found_GPS_long": "96.5875 W", "found_year": 2023, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Found outside Marlatt Hall at Kansas State University in the dirt.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "Phage is Lytic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zamasu_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zamasu_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zamasu_Thumbnail.jpg", "dnam_file": null, "date_added": "2023-11-28T10:14:45-05:00", "date_modified": "2024-02-25T15:28:24-05:00" }, { "phage_name": "Zambuka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Cindy Richard & Ymanuel Sablan", "found_city": "Fort Kent", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "47.254945 N", "found_GPS_long": "68.585421 W", "found_year": 2012, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zambuka_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zambuka_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zambuka_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zambuka_EMPic_Thumb.png", "dnam_file": null, "date_added": "2012-12-14T10:03:16-05:00", "date_modified": "2017-09-12T10:27:26-04:00" }, { "phage_name": "Zameen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My family originates from Punjab, and so the name I chose, Zameen, is Punjabi for \"earth\" or \"land.\" I chose this name because the soil sample came, literally, from the Earth. I also chose this name because it has a special personal significance to me - I am the first women in my family to pursue medicine and science research professionally. I wanted to chose a name that sounded pretty - (Phonetically it is ZUH - MEAN) but also showed how proud I am of my heritage and the opportunities I have today.", "finder_name": "Jaspreet Singh", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44189 N", "found_GPS_long": "79.9557 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Collected outside Barco Building in light brown (softball diamond) colored dirt next to a big maple tree.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CZ", "temperate": true }, "psubcluster": { "subcluster": "CZ1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques on Zameen are round and clear.", "lysogeny_notes": "Lysogen testing revealed that Zameen is likely a temperate phage, as it's plaques have hazy, rather than clear, edges.", "seq_finished": true, "date_finished": "2019-01-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 346, "finishing_reactions": 0, "genome_length": 50337, "gcpercent": "66.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCTGGGGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 79, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zameen_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-04-29T15:49:05-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zameen.gbf", "qced_genbank_file_date": "2019-04-29T15:49:05-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK878898", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zameen_Plaque_rT7XHU6.jpg", "em_file": "https://phagesdb.org/media/emPics/Zameen_EMPic_FbW4ct5.png", "digest_file": "https://phagesdb.org/media/digestPics/Zameen_Digest.pptx", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zameen.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zameen_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZAMEEN_EM_Thumb_Jpeg.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zameen.dnam5", "date_added": "2018-09-23T20:15:45-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zamini", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Definition: Ground\r\nLanguage: Urdu \r\nThe phage was isolated from dirt.", "finder_name": "Christina Cheriyampurathu and Zahra Kanji", "found_city": "Detroit", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.412901 N", "found_GPS_long": "83.13893 W", "found_year": 2022, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "Isolated from the soil at the University of Detroit Mercy Student Union.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic Phage", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-02T09:11:50-05:00", "date_modified": "2024-02-25T15:28:11-05:00" }, { "phage_name": "Zamira", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after me. need to leave a footprint on this world.", "finder_name": "zamira", "found_city": "Nanuet", "found_state": "NY", "found_country": "Rockland", "found_GPS_lat": "41.09 N", "found_GPS_long": "73.95 W", "found_year": 2021, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": true, "discovery_notes": "-Creek front of the Palisades center. \r\n-1000 palisades center dr, west nyack ny 10994.\r\n-collected 10 feet away from the water. \r\n- placed in the refrigerated for 16 hours and 45 minutes. \r\n- GPS Location: 41.0938902 and -73.9566541", "isolation_temperature": 80, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Observation concludes that phages are about 1mm in diameter and purified", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zamira_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zamira_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-18T10:00:32-04:00", "date_modified": "2021-11-15T12:41:47-05:00" }, { "phage_name": "Zammy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of my phage derives from a character from a childhood game, short for \"Zamorak\".", "finder_name": "Kamil Wielechowski", "found_city": "New Haven", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.334722 N", "found_GPS_long": "72.843056 W", "found_year": 2014, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "Found in moist, very dark soil in a compost pile. Depth 1 cm. Temp. 17.8 C. Approximately .5m from pavement. Limited sun exposure. Near cut down trees.\r\n\r\nPhage capsid diameter (nm):\r\nAverage: 67.9365\r\nSt. Dev: 1.214\r\n\r\nPhage tail length (nm):\r\nAverage: 257.9456\r\nSt. Dev: 13.08", "isolation_temperature": 42, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic, 3 mm in diameter (variable diameter on some occasions, sometimes appears to have two phage populations)\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zammy_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zammy_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zammy_Plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zammy_EMPic.jpg", "dnam_file": null, "date_added": "2014-11-18T11:24:43-05:00", "date_modified": "2020-09-17T14:05:47-04:00" }, { "phage_name": "Zamora", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kayla Zamora", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.433477 N", "found_GPS_long": "79.933424 W", "found_year": 2009, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "Located in the courtyard of Mudge House, dirt around the pond. Soil Depth: 1in. Temperature 76 degrees. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "5mm, mostly clear, but a little turbid. Incubation for 48 hours at 32 degrees Celsius", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zamora_Phages.jpg", "em_file": "https://phagesdb.org/media/emPics/Zamora_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zamora_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zamora_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-06-16T16:54:08-04:00" }, { "phage_name": "Zams", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Zama Msibi", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Good fertile soil, shallow, slightly damp environment", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, turbid plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-07-29T07:32:20-04:00", "date_modified": "2017-09-24T13:26:23-04:00" }, { "phage_name": "Zamudio", "old_names": "Angelitis", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My new name is Zamudio, because it is very unique and I know no one else has it on this database. Zamudio is also a town in Spain. ", "finder_name": "Emilia Zamudio", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.213169 N", "found_GPS_long": "97.154376 W", "found_year": 2018, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "I did mine from Direct Plating. The infection time was one-hour. \r\n\r\nFormer Name: \r\nMy little sister's name is Angelina, and when we get into arguments I call her strange and obscure names like Angelitis. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear plaques, 1mm in diameter, round/circular", "lysogeny_notes": "I did not test for Lysogeny, because my plaques did not have any mesas. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zamudio_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zamudio_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-19T10:08:23-05:00", "date_modified": "2020-09-17T14:09:41-04:00" }, { "phage_name": "ZamZam", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's the name of water well located in my hometown ,Makkah. The well was revealed to Hagar, wife of prophet Abraham about 4440 years ago. Also, ZamZam is the name of my mom.", "finder_name": "Ahmad Sulaiman", "found_city": "Bryson City", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.610972 N", "found_GPS_long": "83.424639 W", "found_year": 2016, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "the soil sample was collected ON 03/15/16 from Newfound Gap, mountain pass in the great smokey mountain. Temperature was 28°C at 3:00PM.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The diameter is 1 mm . It makes cloudy zone in spot test.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "azureus", "strain_name": "NRRL B-2655", "strain_species": { "id": 23, "genus": "Streptomyces", "species_name": "azureus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "14921", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 23, "genus": "Streptomyces", "species_name": "azureus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZamZam_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/ZamZam_EMPic_CSvlmjF.jpg", "digest_file": "https://phagesdb.org/media/digestPics/ZamZam_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZamZam_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZamZam_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-06-07T22:13:25-04:00", "date_modified": "2025-06-30T09:08:53-04:00" }, { "phage_name": "Zan1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Najawa Huntley, Abiola Adesoya, Zachary Jackson", "found_city": "Greensboro", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "36.078847 N", "found_GPS_long": "79.772035 W", "found_year": 2016, "p_institution": { "institution_code": "NCAT", "institution_name": "North Carolina A & T State University", "institution_logo": "https://phagesdb.org/media/institutions/NCAT_logo.png", "institution_url": "http://www.ncat.edu/", "institution_city": "Greensboro", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "36.077032", "institution_longitude": "-79.76893" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-28T16:47:00-05:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "ZanappaRanch", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's an acronym of all the initials of all of our names (AH, CP, RP, AA) and the following TAs that we consider honorary group members: Nina (NN) and Angela (AZ).", "finder_name": "Abet Hossen, Connie Park, Roberto Perez, Antonio A", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.388124 N", "found_GPS_long": "72.531691 W", "found_year": 2022, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "From soil next to a sewer a couple days following snowfall, near Maple Hall of UMass Amherst.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "2 mm on average in diameter, uniform bullseye, clear with regular edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZanappaRanch_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZanappaRanch_EMpic_thumb.jpg", "dnam_file": null, "date_added": "2022-04-06T23:32:00-04:00", "date_modified": "2024-09-16T14:10:34-04:00" }, { "phage_name": "Zanasfish", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ann Neumeyer", "found_city": "Tomahawk", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "45.538305 N", "found_GPS_long": "89.730125 W", "found_year": 2010, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Environment: Dry, grassy area\r\nDepth: 1\"\r\nApprox. Temp:60-65°F", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1 mm, very turbid, uniform plates", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zanasfish_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zanasfish_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zanasfish_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zanasfish_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zanasfish_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-10T04:40:36-05:00", "date_modified": "2017-09-22T12:31:45-04:00" }, { "phage_name": "Zanele", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The phage is name is Zanele it is named after my mother.", "finder_name": "Angezwa Siboto", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "the phage is sampled next to O block by the road in the trees", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zanele_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zanele_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-07-10T16:51:23-04:00", "date_modified": "2020-07-28T16:04:33-04:00" }, { "phage_name": "Zanella", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eliomar Rosa-Ramon", "found_city": "Cayey", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.1192 N", "found_GPS_long": "66.1442 W", "found_year": 2018, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EJ", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2069, "finishing_reactions": 0, "genome_length": 42108, "gcpercent": "67.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 58, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zanella_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zanella_Minimal_Final_fb0DrXP.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zanella_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zanella_CoverSheet.pdf", "submitted_annotation_date": "2019-07-31T15:27:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zanella_flat.txt", "qced_genbank_file_date": "2019-07-31T15:27:08-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN369765", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zanella.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-09T11:43:29-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaney", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Natalie Schieber", "found_city": "Elizabethtown", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.743 N", "found_GPS_long": "85.870 W", "found_year": 2009, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "On the Site, the soil was compact and moist. Taken under thin cover of leaves about 5 ft. from a tree trunk. Taken in low area where water often drains. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaney_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaney_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zaney_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaney_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaney_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zang", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Zang\" is a combination of two names in the animated cartoon series \"Avatar: The Last Airbender\" which was one of my favorite shows as a kid. The two names are Zuko and Aang, and these were two really great characters. ", "finder_name": "Yousef Hussain", "found_city": "Malvern", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.046 N", "found_GPS_long": "75.595 W", "found_year": 2015, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": true, "discovery_notes": "The soil was used from a space where a tree was cut down, after a heavy ice storm a couple years ago. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zang_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zang_EMPic_jg2DGGw.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zang_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zang_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-08-10T10:01:50-04:00", "date_modified": "2024-02-25T15:27:50-05:00" }, { "phage_name": "Zangel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the initial and first name of the person who discovered the phage. ", "finder_name": "Angel Chen", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444944 N", "found_GPS_long": "79.959414 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "-The Phage was discovered in an location where there are plenty of foliage and plant life for a nutrient-rich environment for phage growth. \r\n-The weather was a 58 degrees Fahrenheit with cloudy skies and low wind. The surrounding environment had plenty of shrubbery with a large tree in its close proximity. The dirt condition was dry, slightly moist, and had a medium, slightly chunky consistency and cool to touch. \r\n-The soil sample was collected at 8:09am on 9/52017 with a transportation time of 15 minutes in the ziplock bag in a dark backpack to be stored in a room temperature cupboard for about 24 hours before being transported in a dark backpack to the lab on 9/6/2017 in a time span of 20 minutes.\r\n-After going through direct isolation and receiving a positive spot test result, plaque purification was carried out to isolate a singe phage and make a clonal population. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Incubated for two days at 30 degrees Celsius, the plaque appears as small pinpoints in the PYCa plates with a small blurry ring on the edges. The sizes are around 0-1mm and scattered more in the plates.", "lysogeny_notes": "After incubating for 7 days at 30 degrees Celsius, there was no growth of a mesa. The plaques are consistently clear, indicating that Zangel is a lytic phage. ", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zangel_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zangel_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Zangel_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zangel_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zangel_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-09-28T12:45:18-04:00", "date_modified": "2020-09-17T14:08:39-04:00" }, { "phage_name": "ZaniSteve", "old_names": "ZaniSteve", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Fatimah Dukuray and Nicholas Ensor", "found_city": "Upperco", "found_state": "MD", "found_country": "United States of America", "found_GPS_lat": "39.58186 N", "found_GPS_long": "76.83436 W", "found_year": 2024, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "My sample was found as you walk past the practice green, on the wedging area there are mats that the soil sample was taken from. The soil sample is from the grass right in front of the hitting mats.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are turbid and have a distinct margin. The plaques look to be around the same size. Most are really small, while some are miniscule.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZaniSteve_Plaque_lNOgMk9.png", "em_file": "https://phagesdb.org/media/emPics/ZaniSteve_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-11T16:36:48-04:00", "date_modified": "2025-04-04T11:37:32-04:00" }, { "phage_name": "Zanos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Summers", "found_city": "Corvallis", "found_state": "OR", "found_country": "USA", "found_GPS_lat": "44.567616 N", "found_GPS_long": "123.282116 W", "found_year": 2010, "p_institution": { "institution_code": "ORSU", "institution_name": "Oregon State University", "institution_logo": "https://phagesdb.org/media/institutions/OregonStateUniversity.jpg", "institution_url": "http://www.oregonstate.edu/", "institution_city": "Corvallis", "institution_state": "OR", "institution_country": "USA", "institution_latitude": "44.564006", "institution_longitude": "-123.2794" }, "enriched_sample": true, "discovery_notes": "70°F, Humidity 82%, dew point 65°F. Collection site: roadway by cow barn, near fire hydrant, and about 1/2 inch deep in soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small in diameter (about 1-2.5 mm in size), placed fairly close together (about 1-3 mm average between plaques) cloudy in appearance.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zanos_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zanos_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zanos_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-02-07T11:02:02-05:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zany", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zainab Hussein and Amanda Lewis", "found_city": "Saint Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.5675 N", "found_GPS_long": "90.42134 W", "found_year": 2020, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "Soil collected from dry creek bed. Rich and dark soil mixed with gravel.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DV", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 165, "finishing_reactions": 0, "genome_length": 68241, "gcpercent": "58.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 95, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zany_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zany_Minimal_Final_SYjZTOd.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zany_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zany_CoverSheet.pdf", "submitted_annotation_date": "2021-11-06T20:48:07-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zany_flat.txt", "qced_genbank_file_date": "2021-11-06T20:48:07-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OL455887", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zany.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zany_EMPic_Thumb.png", "dnam_file": null, "date_added": "2020-12-14T11:05:04-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zanze", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name was obtained using a random word generator.", "finder_name": "MC, AH, DS, WH", "found_city": "Easthampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.253615 N", "found_GPS_long": "72.682511 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil sample was collected from a residential backyard area near some woods with a brook.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1.5mm in diameter, round, clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-28T12:56:36-04:00", "date_modified": "2025-03-28T12:56:36-04:00" }, { "phage_name": "Zanzibar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Initially named Phagémon because of the clever wordplay combo discovered when combining the word \"Phage\" and \"Pokémon\", which is the name of a creature in the Japanese cartoon series, \"Pokémon\". Much like the show, there are several types of phages as there as pokemon. \r\nEdit: Named changed to Zanzibar; name choice of partner for unknown reasons.", "finder_name": "Sabina Cabrera", "found_city": "Pensacola", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UWFL", "institution_name": "University of West Florida", "institution_logo": "https://phagesdb.org/media/institutions/UWestFlorida.png", "institution_url": "http://uwf.edu/", "institution_city": "Pensacola", "institution_state": "FL", "institution_country": "United States", "institution_latitude": "30.546962", "institution_longitude": "-87.21669" }, "enriched_sample": true, "discovery_notes": "Found in soil nearby the university community garden. Location was chosen out of curiosity; soil that is near the roots of different types of vegetables may produce phages that are different that ones found in regular soil in the middle of a field, for example. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology for Zanzibar is lytic and small. Plaques tend to cluster into larger-appearing plaque, which initially made the counting process difficult. Morphology remained consistent throughout isolation, dilution and purification. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zanzibar_EMPic.html", "digest_file": "https://phagesdb.org/media/digestPics/Zanzibar_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-02T09:46:51-05:00", "date_modified": "2020-09-17T14:06:15-04:00" }, { "phage_name": "Zaph", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a special friend of ours", "finder_name": "Madeline Schneider and Kate Lester", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667233 N", "found_GPS_long": "117.402877 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Phage soil collected five steps off of the foot stone path of the Jesuit garden. Seven scoops were taken four inches from the surface of the soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Size: \r\nCapsid: 60nm\r\nTail: 300 nm\r\nTotal: 360 nm, 22 cm\r\nNot a K phage.\r\nLytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaph_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zaph_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaph_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaph_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-04-14T15:54:02-04:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "Zaphira", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zaphira was named based on:\r\nZ for Zitlaly\r\nph for Phoenix", "finder_name": "Z. Rodriguez, J. Bencomo, D. Santana, E. Gideon", "found_city": "Phoenix", "found_state": "AZ", "found_country": "USA", "found_GPS_lat": "33.36768 N", "found_GPS_long": "112.08156 W", "found_year": 2025, "p_institution": { "institution_code": "PHXC", "institution_name": "Phoenix College", "institution_logo": "https://phagesdb.org/media/institutions/PhoenixCollegeLogo_vertical_RGB.png", "institution_url": "https://www.phoenixcollege.edu/", "institution_city": "Phoenix", "institution_state": "AZ", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found in the Zitlaly's backyard near a frequently-watered tree", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small-medium diffuse plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zaphira_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-05-01T12:45:08-04:00", "date_modified": "2025-05-01T12:45:08-04:00" }, { "phage_name": "ZaphiroChan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zaphiro means sapphire in Spanish, which is the birth stone for the month September in which we discovered our phage. As for Chan, it's a term of endearment in Japanese.", "finder_name": "Areej Chalabi, Miskir Belayneh", "found_city": "Baltimore", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "The sample was obtained from a direct isolation from a soil that was fresh, dark, and muddy.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD1" }, "morphotype": "SIPHO", "plaque_notes": "plaques randged in size from 1-2 mm", "lysogeny_notes": "we presume that this phage follows a virulent lifestyle and is a temperate phage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZaphiroChan_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/ZaphiroChan_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/ZaphiroChan_Digest_6cwEZCL.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZaphiroChan-pl.png", "em_thumb_file": "https://phagesdb.org/media/emPics/ZaphiroChan-tem.png", "dnam_file": null, "date_added": "2019-10-14T22:29:01-04:00", "date_modified": "2020-09-17T14:11:12-04:00" }, { "phage_name": "Zaphkiel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kristina Sevcik", "found_city": "Orange City", "found_state": "IA", "found_country": "United States of America", "found_GPS_lat": "43.000924 N", "found_GPS_long": "96.044494 W", "found_year": 2019, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": false, "discovery_notes": "Soil sample collected from rhubarb patch of garden in summer June 2018.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Has both large and small plaque morphologies that are inseparable, with small halos.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaphkiel_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaphkiel_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-26T02:55:34-04:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Zaphod", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for Zaphod Beeblebrox, the ex-president of the universe in Douglas Adams' Hitchhiker's Guide to the Galaxy.", "finder_name": "Daniel Devonshire", "found_city": "Olympia", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.127934 N", "found_GPS_long": "122.885182 W", "found_year": 2016, "p_institution": { "institution_code": "EVER", "institution_name": "The Evergreen State College", "institution_logo": "https://phagesdb.org/media/institutions/Evergreen-Tree-Logo.png", "institution_url": "http://www.evergreen.edu/", "institution_city": "Olympia", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.072073", "institution_longitude": "-122.9766" }, "enriched_sample": true, "discovery_notes": "Found in the same soil enrichment as DwightSchrute, found by Irwin, Casey and Nowotny, Taylor, as well as GreenCheese, found by Roberts, Justin and Munoz, Robert.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zaphod_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zaphod_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-03-13T15:46:55-04:00", "date_modified": "2020-08-31T09:28:53-04:00" }, { "phage_name": "Zapner", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zach Kramer", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.441208 N", "found_GPS_long": "79.955017 W", "found_year": 2013, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found at the base of a tree in dry clumpy soil in Bouquet Gardens on the campus of The University of Pittsburgh.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-11-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 15980, "finishing_reactions": 0, "genome_length": 55307, "gcpercent": "61.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCAGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 108, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KJ567041", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zapner_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zapner_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zapner_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zapner.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zapner_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zapner_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-09-24T09:46:16-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zappa", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Helen Rich", "found_city": "Lexington", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2007, "p_institution": { "institution_code": "LEXI", "institution_name": "Lexington High School", "institution_logo": "https://phagesdb.org/media/institutions/Lex-01.jpg", "institution_url": "http://lhs.lexingtonma.org/", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-07-01T06:40:00-04:00", "date_modified": "2019-03-20T10:23:04-04:00" }, { "phage_name": "Zappy1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to originally name the phage ZPhage1 but it did not process through. My professor suggested Zappy and I thought it was a catchy name. I ended up going with Zappy1", "finder_name": "Zain Haq", "found_city": "Naperville", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.712142 N", "found_GPS_long": "88.171347 W", "found_year": 2023, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil was retrieved from the backyard of my home. The weather was around 20° and there was snow on the ground due to snowfall on previous nights. The soil was hard so I dug down approximately 2-4 inches. I retrieved around 1/2 lb of soil in a clear zip-lock bag. The soil was darker brown and had small pieces of sediment. The soil did become moist since it was slightly frozen with snow.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque diameter had been approximately 2-2.5mm. Zappy1 was a lytic phage so the plaques had been clear and rounded with no fuzziness.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zappy1_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zappy1_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zappy1_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-27T15:21:37-04:00", "date_modified": "2023-04-27T15:21:37-04:00" }, { "phage_name": "Zara", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zara Kaleem", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445 N", "found_GPS_long": "79.962 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "“Zara” has created plaques that are typically the size of a sharpened pencil tip; however, this phage has also created rather large plaques that deviate from its norm. These are shown to grow to around 2 millimeters in diameter. The plaques are consistently round and transparent. Besides occasional deviance, the morphology of the plaques are generally uniform in appearance.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zara_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Zara_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zara_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zara_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zara_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-16T08:02:03-04:00", "date_modified": "2020-09-17T14:08:39-04:00" }, { "phage_name": "Zara11", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This Phage came from my cats name because of the struggle it took to find this phage.", "finder_name": "Jill Lang", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.4334 N", "found_GPS_long": "78.8739 E", "found_year": 2018, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-05T11:41:59-05:00", "date_modified": "2018-12-04T13:12:43-05:00" }, { "phage_name": "Zarafa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named Zarafa because the sample was collected in front of the giraffe enclosure at the Lunaret Zoo in Montpellier. \"Zarafa\" is a historical name associated with giraffes, referencing the famous giraffe gifted to France in the 19th century.", "finder_name": "Chloé Deflandre", "found_city": "Montpellier", "found_state": "", "found_country": "France", "found_GPS_lat": "43.641138 N", "found_GPS_long": "3.877575 E", "found_year": null, "p_institution": null, "enriched_sample": true, "discovery_notes": "The phage was discovered in a soil sample collected in front of the giraffe enclosure at the Lunaret Zoo (Zoo de Montpellier) in Montpellier, France.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-05-28", "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 25577, "finishing_reactions": 0, "genome_length": 50270, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zarafa_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zarafa_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zarafa.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-05-23T12:58:31-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zarambe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brijai Varma", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4436 N", "found_GPS_long": "79.9602 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": " The condition of the soil was very dry and fine with some crumbled dirt and was a light, washed out brown color. The nearby vegetation is shown in the picture with many bushes and one medium sized tree present in the surrounding area. These pictures were taking on September 3rd, 2018 at 5:13 PM, with sunny clear skies and a temperature of 91 degrees Fahrenheit. The humidity was 46% with winds blowing S.W. at 6 mph. The location's coordinates are 40.4436 for Latitude and -79.9602 for Longitude.\r\n\r\nThe soil sample was was stored in a room temperature drawer at 72 degree Fahrenheit for approximately 16 hours. The sample was then transported to the lab in a span of 3 hours.\r\n\r\n", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "On the plate, the top left side with the opaque yellow white tint describes negative results and contamination from other factors. However, the entire other side of the plate contains multiple large plaques that do not have clear borders. There are many small specs left over of the orange top layer of agar as most of the top layer is cleared. The top layer of agar has a rough texture. \r\n\r\nFor the spot test, there were three, large circular spots on the plate. There were no signs of contamination, as the top layer agar was mostly a smooth surface with orange tint except for the three large circular plaques, which were clear in color and in terms of clarity, were mostly transparent. These descriptions relate to positive results for the spot test.", "lysogeny_notes": "No lysogen produced due to contamination.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zarambe_Plaque_HKQPUaE.png", "em_file": "https://phagesdb.org/media/emPics/Zarambe_EMPic_EGwJkEf.png", "digest_file": "https://phagesdb.org/media/digestPics/Zarambe_Digest_dIKM9ac.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zarambe_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zarambe_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-09-20T14:43:14-04:00", "date_modified": "2020-09-17T14:10:36-04:00" }, { "phage_name": "Zarbodnamra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Note: the \"(r)'s\" are silent.\r\n\r\nPronounced zah-bod-nom-ah.\r\n\r\n\t\"We are going to die, and that makes us the lucky ones. Most people are never going to die because they are never going to be born. The potential people who could have been here in my place but who will in fact never see the light of day outnumber the sand grains of Arabia. Certainly those unborn ghosts include greater poets than Keats, scientists greater than Newton. We know this because the set of possible people allowed by our DNA so massively exceeds the set of actual people. In the teeth of these stupefying odds it is you and I, in our ordinariness, that are here. We privileged few, who won the lottery of birth against all odds, how dare we whine at our inevitable return to that prior state from which the vast majority have never stirred?\" —Richard Dawkins", "finder_name": "Armando Braz", "found_city": "Bethlehem", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.65659 N", "found_GPS_long": "75.342957 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Location: This soil sample was collected from my hometown of Bethlehem, PA just prior to the start of the semester. I wanted to see if I'd see any luck with some soil from over 300 miles away, just out of curiosity.\r\n\r\nThe Soil Conditions: I retrieved this soil from my vegetable garden that had been used the previous summer. This soil is used annually to grow tomatoes, peppers, cucumbers, parsley, broccoli and other herbs/vegetables. Every year I use miracle grow nutrients in order to give the plants more of what they need to grow. On the day of soil collection (Jan 8, 2017), the sol was very dry and frozen. The soil appeared \"deadened\" in that the soil was a gray brown colour and was not very cohesive (sandy/loamy texture). There was a lot of plant detritus mixed in with the soil.\r\n\r\nWeather Conditions: At the time of collection, air temperature was -6 degrees celcius. 3 days prior there was a snow storm, with snow from that still present on the ground. Weather over the past 24 hours involved blustering winds, with freezing rain overnight. During the actual collection of the soil however, skies were clear.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CV", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "My phage produced clear plaques that vary in diameter size, ranging from diameter = .5mm to diameter = 3mm. The plaques are for the most part entirely circular and form a well defined boundary between where cells underwent lysis, and where cells did not.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1504, "finishing_reactions": 0, "genome_length": 49729, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGCCGGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zarbodnamra_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-06-29T13:30:12-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zarbodnamra_flat.txt", "qced_genbank_file_date": "2018-06-29T13:30:12-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH576969", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zarbodnamra_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zarbodnamra_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zarbodnamra_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zarbodnamra.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zarbodnamra_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zarbodnamra_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-02-19T07:53:13-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zardona", "old_names": "Twerk", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name twerk was not yet taken and is a popular dance move of this era.", "finder_name": "Alison Zander & Christine Sardona", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667222 N", "found_GPS_long": "117.4025 W", "found_year": 2013, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Discovered from a soil sample located on Gonzaga grounds. The location is in flower bed next to a sidewalk where there was a lot of foot traffic.\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are virulent, and formed within only a couple days of plating. They appear small and circular. They are also clear, which means it is a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Twerk_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Twerk_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Twerk_Digest.tiff", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Twerk_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Twerk_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-07T13:09:51-05:00", "date_modified": "2020-09-17T14:05:35-04:00" }, { "phage_name": "Zareef", "old_names": "BH4", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named \"Zareef\" after my boyfriend.", "finder_name": "Kayla Starks", "found_city": "Kirkwood", "found_state": "MO", "found_country": "United States of America", "found_GPS_lat": "38.56755 N", "found_GPS_long": "90.42088 W", "found_year": 2023, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CT", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-31", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 768, "finishing_reactions": 0, "genome_length": 45315, "gcpercent": "61.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zareef_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zareef_Minimal_Final_Wab4EQc.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zareef_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zareef_CoverSheet.pdf", "submitted_annotation_date": "2025-07-11T14:43:29-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zareef_flat.txt", "qced_genbank_file_date": "2025-07-11T14:43:29-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV941001", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zareef_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zareef_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zareef.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-03-27T08:46:36-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaria", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name after one of Africa's well known Queens", "finder_name": "Philleon Chambers", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.746647 N", "found_GPS_long": "84.413939 W", "found_year": 2016, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "PCR Primer cluster assignment: B5", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L1" }, "morphotype": "SIPHO", "plaque_notes": "Clear, size ranged from 1 mm-2 miller-meters, edge of phage vary in clearness as in visibility of a define edges from lightly fade to clean cut", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1668, "finishing_reactions": 0, "genome_length": 74365, "gcpercent": "58.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGAACGGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 128, "num_tRNAs": 9, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zaria_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-14T20:54:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zaria.gbf", "qced_genbank_file_date": "2019-10-14T20:54:40-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN586023", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zaria.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zaria.dnam5", "date_added": "2016-11-17T13:59:25-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zariki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zarah Synnestvedt and Niki Siafarika", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.038556 N", "found_GPS_long": "75.15202 W", "found_year": 2024, "p_institution": { "institution_code": "LASL", "institution_name": "La Salle University", "institution_logo": "https://phagesdb.org/media/institutions/la-salle-university.gif", "institution_url": "http://www.lasalle.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.039459", "institution_longitude": "-75.15517" }, "enriched_sample": true, "discovery_notes": "From a plant in a greenhouse either Pathos or Philodendron. The host used was G. rubripertincta so the plaques were very small making it difficult to see.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Combination of the names of the people who found it", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-05T15:06:53-05:00", "date_modified": "2025-04-04T11:37:28-04:00" }, { "phage_name": "Zarkos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nadia Bostick, Danielle Oudenhoven", "found_city": "Kirkwood", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.567673 N", "found_GPS_long": "90.421858 W", "found_year": 2020, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": null, "discovery_notes": "Sample is from the border\r\nof a manicured lawn and mulched garden. Taken from a clump of clover. Full sun.\r\n\r\n\r\n\r\nCollected from about 2 to\r\n4 inches deep in zip lock bag.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zarkos_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zarkos_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zarkos_EMPic_Thumb.png", "dnam_file": null, "date_added": "2020-11-18T14:06:25-05:00", "date_modified": "2021-06-01T17:19:12-04:00" }, { "phage_name": "Zarnelli", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage after my three dogs (one of which recently passed). Harley, Benelli, and Zoey.", "finder_name": "Makayla Lembo", "found_city": "Allenstown", "found_state": "NH", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The soil was collected from my backyard in Allenstown, New Hampshire. The soil was slightly damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zarnelli_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Zarnelli_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zarnelli_Digest.HEIC", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-17T10:11:29-05:00", "date_modified": "2022-03-16T11:01:55-04:00" }, { "phage_name": "Zartrosa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zartrosa is the word for pale pink in German. We got the inspiration for this name because we both take German and enjoy the sound of the word.", "finder_name": "Hili Melo, Erika Roberts", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.320833 N", "found_GPS_long": "72.643333 W", "found_year": 2016, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "Soil was dark and partially wet. Its texture was soft to the touch. Collected in front of Jordan House on Smith College Campus, soil was around a tree on the quadrangle. Approximately 2.6 cm deep.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AO", "temperate": false }, "psubcluster": { "subcluster": "AO2" }, "morphotype": "", "plaque_notes": "Notes from our 10-1 dilution bacteriophage plate. Because of its high concentration, this plate presented many small plaques. There were many small plaques all very close together on the plate.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-03-02", "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4219, "finishing_reactions": 0, "genome_length": 50782, "gcpercent": "61.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 79, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zartrosa_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zartrosa_Minimal_Final_yzP6C0W.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zartrosa_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zartrosa_CoverSheet.pdf", "submitted_annotation_date": "2019-06-28T14:38:31-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zartrosa_flat.txt", "qced_genbank_file_date": "2019-06-28T14:38:31-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN183279", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zartrosa_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zartrosa.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zartrosa_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-26T14:42:20-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zas1107", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zakariyya Siddiqui", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.506944 N", "found_GPS_long": "81.604167 W", "found_year": 2024, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-10T13:22:45-05:00", "date_modified": "2025-04-04T11:37:44-04:00" }, { "phage_name": "ZaSan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is a combined name of my younger siblings. Sanya and Zavian are my siblings names, and I thought to combine their names together for this phage.", "finder_name": "Riya Miglani", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.42468 N", "found_GPS_long": "86.91057 W", "found_year": 2024, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "The sample that I took was taken alongside The Union Club Hotel on North Grant St near its variety of vegetation. Although the soil sample itself was not underneath any growing plant or flower, there were mixed grasses and trees near where I took my soil sample. The sample was taken in a 15 mL test tube and was about ¾ full. The temperature the soil was taken at was 70 degrees, with the sample being cooler as it was taken in the morning at around 8am. The soil felt damp, although there was no rain this weekend. The soil was also compacted instead of dry and are sticking to each other. The sample was taken off the surface of the ground to about 3 cm underneath. However, when I arrived in the lab, I used a spatula to remove the soil until it was around 8-9 mL, which was about ½ of the test tube.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque morphology indicates numerous characteristics about my phage. After doing some research, it seems that a clear plaque is in its lytic phage. This means that the phage latches on to the bacteria, replicates inside of it, and then makes the cell burst. This also then results in a release of phages. Having a larger size can mean that the phage can replicate in a quick manner. Lastly, I am assuming that with a phage that is almost perfectly round, it will be steady in doing it’s job. Structure determines function, so if it has a perfectly round shape, it should be perfectly stable in carrying out its function. These characteristics will affect the phage’s use in real-world applications since it can cure many diseases using phage therapy. Since this phage is stable enough to replicate and make the cell burst, it could perform well in what it needs to do. This is due to the lytic nature of the phage. Hence, phage therapy would be an ideal real world application for this phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZaSan_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-25T12:49:35-04:00", "date_modified": "2025-04-04T11:37:46-04:00" }, { "phage_name": "Zashind", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "To make a name that was different i started combining different words and names to see what i could come up with. I combined my name with my boyfriends name to create the name Zashind.", "finder_name": "Ashley White", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "42.7086 N", "found_GPS_long": "24.483 W", "found_year": 2013, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "The soil sample used to find Zashind was found not even an inch under ground. It was approximately 62 degrees Fahrenheit. It was a somewhat damp soil sample found next to my driveway. The area was very close to the bottom of a bush. The soil was almost always in the shade. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaque was approximately 4mm in size. It is a lytic plaque meaning it is a clear plaque. Very viscous phage clearing almost all of the mycrobacterium smematisoff of the plates until the end of the dilution series.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zashind_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zashind_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zashind_Plaque_Thumb_7nQDVtY.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zashind_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-25T14:13:06-05:00", "date_modified": "2020-09-17T14:05:23-04:00" }, { "phage_name": "Zassy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combined the names of the two phage finders.", "finder_name": "Zina Zimmerman and Kasey Yok", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "About 2 mm in diameter and turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-03T11:18:49-05:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Zatina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of both of our names. ", "finder_name": "Cristina Lucas and Zachary Hollins", "found_city": "North Andover", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.670278 N", "found_GPS_long": "71.124444 W", "found_year": 2017, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from a flower bed, which was covered in bark mulch. The location received sun light for a good portion of the day, however, it was also in the shade. The soil sample was taken from 2 inches below the top soil and had a sandy appearance. The sample was also damp, but not soaking wet. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "Zatina plaques are about 0.25 cm in diameter. The plaques are also clear in color. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": "2018-01-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1858, "finishing_reactions": 0, "genome_length": 41901, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zatina_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zatina_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zatina_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-06T07:48:41-05:00", "date_modified": "2020-09-17T14:09:35-04:00" }, { "phage_name": "Zavala", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Roger Marin, Nathan Vodicka, Julian Garcia", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.764 N", "found_GPS_long": "97.404 W", "found_year": 2016, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Moist soil, slightly green on top of the soil\r\nHad slight odor\r\nPartially cloudy, 84 degrees Fahrenheit, 75% humidity\r\nFound near storm drain on 1100 York Avenue", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 527, "finishing_reactions": 0, "genome_length": 59969, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zavala_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-07-25T15:11:28-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zavala.gbf", "qced_genbank_file_date": "2019-07-25T15:11:28-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN234198", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zavala_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zavala_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zavala_Digest_UdE20tf.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zavala.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zavala_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zavala_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zavala.dnam5", "date_added": "2016-10-26T15:06:36-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaverl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Rachel Rhein", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaverl_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaverl_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-08T15:20:45-05:00", "date_modified": "2022-03-16T11:02:31-04:00" }, { "phage_name": "Zavian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after my baby brother, Zavian. This name means bright/radiant.", "finder_name": "Riya Miglani", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.42468 N", "found_GPS_long": "86.91057 W", "found_year": 2024, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "The sample that I took was taken alongside The Union Club Hotel on North Grant St near its variety of vegetation. Although the soil sample itself was not underneath any growing plant or flower, there were mixed grasses and trees near where I took my soil sample. The sample was taken in a 15 mL test tube and was about ¾ full. The temperature the soil was taken at was 70 degrees, with the sample being cooler as it was taken in the morning at around 8am. The soil felt damp, although there was no rain this weekend. The soil was also compacted instead of dry and are sticking to each other. The sample was taken off the surface of the ground to about 3 cm underneath. However, when I arrived in the lab, I used a spatula to remove the soil until it was around 8-9 mL, which was about ½ of the test tube.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque morphology indicates numerous characteristics about my phage. After doing some research, it seems that a clear plaque is in its lytic phage. This means that the phage latches on to the bacteria, replicates inside of it, and then makes the cell burst. This also then results in a release of phages. Having a larger size can mean that the phage can replicate in a quick manner. Lastly, I am assuming that with a phage that is almost perfectly round, it will be steady in doing it’s job. Structure determines function, so if it has a perfectly round shape, it should be perfectly stable in carrying out its function. These characteristics will affect the phage’s use in real-world applications since it can cure many diseases using phage therapy. Since this phage is stable enough to replicate and make the cell burst, it could perform well in what it needs to do. This is due to the lytic nature of the phage. Hence, phage therapy would be an ideal real world application for this phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zavian_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-24T08:15:06-04:00", "date_modified": "2025-04-04T11:37:46-04:00" }, { "phage_name": "ZaWarudo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Eastern Asian-English take on the concept of the \"World\". Heavily influenced by time.", "finder_name": "Mohammed Shaariq Khan", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.454861 N", "found_GPS_long": "79.926111 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil collection site was by a tree and grass next to the sidewalk and road. Moisture was nothing of note. Direct exposure to sunlight. The sample was carried outside in a plastic bag and into a classroom in a book bag until it was taken into a lab at 8:30 am.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear, and round.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZaWarudo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/ZaWarudo_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/ZaWarudo_Digest_VANtDtJ.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZaWarudo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZaWarudo_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-14T22:21:50-04:00", "date_modified": "2020-09-17T14:12:03-04:00" }, { "phage_name": "Zaweel", "old_names": "AQFlood", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zaid Taweel", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.317 N", "found_GPS_long": "75.925 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small-medium sized plaques with clear borders and no bulls-eye pattern", "lysogeny_notes": "appears to be lytic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/AQFlood_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaweel_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zaweel_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaweel_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaweel_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-17T07:58:48-04:00", "date_modified": "2025-07-31T14:03:52-04:00" }, { "phage_name": "Zawisza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first black knight in Europe.", "finder_name": "Mckeiyane Evelyn Connors", "found_city": "West Nyack", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.093276 N", "found_GPS_long": "73.966351 W", "found_year": 2018, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques appear lysogenic in round 2 of purification.\r\n\r\n(Plaque 10^-1 is lytic)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zawisza_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-12T14:38:45-04:00", "date_modified": "2020-09-17T14:10:21-04:00" }, { "phage_name": "Zaybriel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of the names Zakiya and Gabriel. ", "finder_name": "Gabriel Nah", "found_city": "Lincoln University", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "LINC", "institution_name": "Lincoln University", "institution_logo": "https://phagesdb.org/media/institutions/LincolnLogo.jpg", "institution_url": "http://homepage.lincoln.edu/", "institution_city": "Lincoln University", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.808339", "institution_longitude": "-75.92744" }, "enriched_sample": true, "discovery_notes": "The soil was moist given it rained the night before. I avoided as much rocks and grass as possible but there was a little bit of grass and rocks in the soil sample. When digging for the soil sample, I did not dig that deep into the soil. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-17T22:40:25-05:00", "date_modified": "2017-11-17T22:40:25-05:00" }, { "phage_name": "Zaydeh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lia Y. Schwartz", "found_city": "Somerville", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.407578 N", "found_GPS_long": "71.130324 W", "found_year": 2022, "p_institution": { "institution_code": "TFTS", "institution_name": "Tufts University", "institution_logo": "https://phagesdb.org/media/institutions/Tufts_univ_blue_KocimAw.png", "institution_url": "https://www.tufts.edu/", "institution_city": "Medford", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected from a garden in Sommerville, MA. The soil was very dark with some mulch, giving it a rough and granular texture.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The phage seemingly presented with two distinct morphologies depending on the concentration of phages in the surrounding area. When very isolated, plaques tended to be very large (0.2cm) with a clear center and clear margins. When more clustered, plaques were much smaller with slightly more turbid centers and clear margins.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "ACGT", "facility_name": "ACGT Inc.", "contact_person": "", "shipping_address": "", "facility_website": "http://www.acgtinc.com/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaydeh_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zaydeh_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaydeh_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zaydeh_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-12-06T14:42:19-05:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Zayin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Erica Gajda and Hanan Lipetz", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "39.930083 N", "found_GPS_long": "105.022056 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected on 1/22/24 at 7:00pm.The outdoor temperature was 3.89º", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zayin_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zayin_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-13T08:14:34-04:00", "date_modified": "2025-04-04T11:37:42-04:00" }, { "phage_name": "ZAYM", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first letters of each of our names on our team.", "finder_name": "A. Nadimpalli M. DiazGranados Y. Adeel Z. Browne", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4436 N", "found_GPS_long": "79.9545 W", "found_year": 2022, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Found at William Pitt Union on University of Pittsburgh-Pittsburgh Campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DB", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-09-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2804, "finishing_reactions": 0, "genome_length": 47114, "gcpercent": "67.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGCCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZAYM_Plaque_ExnmSw1.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZAYM_Digest_Whil4oQ.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZAYM.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_2735.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-03T12:05:26-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaytay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zadie Onishuk and Julia Taylor ", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.6675 N", "found_GPS_long": "117.402 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found this phage near college hall on Gonzaga University's campus, near the welcome wall. \r\n\r\n117.4024", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques were an average .4 cm in diameter with slightly fuzzy edging. additionally, it was a fairly clear, but not crystal clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaytay_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zaytay_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-13T11:05:41-04:00", "date_modified": "2020-09-17T14:09:06-04:00" }, { "phage_name": "Zaytoun", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zaytoun is the Arabic word for \"olive\". The olive branch holds profound meaning in Levantine countries like Palestine and Lebanon and symbolizes the peace we hope will come about in this world.", "finder_name": "Ashlyn Nguyen", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.404125 N", "found_GPS_long": "75.657149 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The phage was found in relatively wet soil in a flower garden.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques displayed a \"bullseye\" pattern and were medium in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaytoun_Plaque_PStOUJb.png", "em_file": "https://phagesdb.org/media/emPics/Zaytoun_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zaytoun_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Screen_Shot_2023-10-30_at_3.23.31_PM.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-16T11:15:15-04:00", "date_modified": "2024-02-25T15:28:23-05:00" }, { "phage_name": "Zayuliv", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Angel Zayas-Morales", "found_city": "Guayama", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.013811 N", "found_GPS_long": "66.119002 W", "found_year": 2019, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA5" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2237, "finishing_reactions": 0, "genome_length": 40457, "gcpercent": "63.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 61, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zayuliv_CompleteNotes_rKcYDIs.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zayuliv_Minimal_Final_owMTtaR.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zayuliv_Authors_bDTVaBF.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zayuliv_CoverSheet.pdf", "submitted_annotation_date": "2020-08-04T15:04:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zayuliv_flat.txt", "qced_genbank_file_date": "2020-08-04T15:04:00-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT889377", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zayuliv.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-20T16:25:47-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zaza", "old_names": "Zzzz", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From the Initials of two founders.", "finder_name": "Zhiqi Zhang& Zonghao Zhang", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.48 N", "found_GPS_long": "86.89 W", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected from Purdue Campus on August 28th. The soil was a little moist when collected and it was 3cm below ground level.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear, middle size phage", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zaza_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zaza_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zaza_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-07T06:50:23-05:00", "date_modified": "2020-09-17T14:08:46-04:00" }, { "phage_name": "Zazu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alexandra Gutierrez and Alfredo Roman", "found_city": "Fabens", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.56 N", "found_GPS_long": "106.16 W", "found_year": 2011, "p_institution": { "institution_code": "UTEP", "institution_name": "University of Texas at El Paso", "institution_logo": "https://phagesdb.org/media/institutions/UTEP.jpg", "institution_url": "http://www.utep.edu/", "institution_city": "El Paso", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.773367", "institution_longitude": "-106.5057" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zazu_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zazu_EMPic.png", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Zazu_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zazu_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zazu_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-09-28T10:14:09-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zazz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Reilly Kilpatrick", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.7864 N", "found_GPS_long": "79.9381 W", "found_year": 2017, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-31T20:32:15-04:00", "date_modified": "2017-10-31T20:32:15-04:00" }, { "phage_name": "Zberry", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zayna Hamdan & Lindsay Chung", "found_city": "Canton", "found_state": "MI", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "Came from soil in area full of sun and rain.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Lysogenic, big plaque size, the kill spots look like targets.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-27T08:01:12-05:00", "date_modified": "2025-07-11T12:34:14-04:00" }, { "phage_name": "ZBurn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Wendy Myers, Nene Matey", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.211262 N", "found_GPS_long": "97.143249 W", "found_year": 2013, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Discovered in the UNT-HHMI 2013 Summer Transitions Workshop. Soil taken from the front of an apartment complex with a garden nearby. Dark, damp soil, very sunny area.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZBurn_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZBurn_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-10-05T11:53:55-04:00", "date_modified": "2020-09-17T14:09:23-04:00" }, { "phage_name": "ZCat9", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nathisa Zamor and Camillah Shoo", "found_city": "Nyack", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.095756 N", "found_GPS_long": "73.927319 W", "found_year": 2015, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil was dark brown \"clay\" (retained water well) and moist because it was collected within 24 hrs since a rainfall. Soil site had trees scattered around the terrain. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque Morphology (after 24hrs):\r\nDiameter: \r\nClarity of Plaque: Clear \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-17T16:04:54-05:00", "date_modified": "2020-09-17T14:06:32-04:00" }, { "phage_name": "Zeacdef2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Beatrice Olivier", "found_city": "Washington", "found_state": "DC", "found_country": "United States", "found_GPS_lat": "38.92209 N", "found_GPS_long": "77.02022 W", "found_year": 2022, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-10T10:30:44-05:00", "date_modified": "2024-02-25T15:27:51-05:00" }, { "phage_name": "Zebedee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zebedee, originally, was the father of the disciples James and John, and the name means \"The Lord Has Bestowed\". This name was appropriate after the virus was generously donated to a student who failed to isolate a virus from one who isolated multiple.", "finder_name": "", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, mostly circular plaques with slightly rough edges. The average diameter of plaques on normal cells was 1.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zebedee_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/new_thing.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-24T11:32:12-05:00", "date_modified": "2020-09-17T14:06:27-04:00" }, { "phage_name": "Zebidiah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Biblical Inspiration", "finder_name": "Riccardo Rapetti, Sam Swisher", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.006596 N", "found_GPS_long": "105.265872 W", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "11:32 am, January 22nd on a cloudy day", "isolation_temperature": -2, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Halo morphology indicating temperate phage, 2 mm in Diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zebidiah_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zebidiah_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zebidiah_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zebidiah_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-25T16:44:38-04:00", "date_modified": "2021-01-28T11:04:27-05:00" }, { "phage_name": "Zebo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katie Bolstad", "found_city": "Butte", "found_state": "MT", "found_country": "United States", "found_GPS_lat": "45.999423 N", "found_GPS_long": "112.49662 W", "found_year": 2006, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": null, "discovery_notes": "Zebo was originally discovered by Katie Bolstad at East Middle School in 2006. Zebo was then archived at Montana Tech University.\r\n\r\nIn 2024, Kia Wasson and Taylinn Garrett discovered more data on Zebo while working in the SEA-PHAGES laboratory.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "O", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3496, "finishing_reactions": 0, "genome_length": 71217, "gcpercent": "65.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "GTGT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 125, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zebo_CompleteNotes.docx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zebo_Minimal_Final_4PTcX0I.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zebo_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zebo_CoverSheet.docx", "submitted_annotation_date": "2025-07-12T18:53:03-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zebo.Flat", "qced_genbank_file_date": "2025-07-12T18:53:03-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV962790", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zebo_Plaque_AMOzqjq.jpg", "em_file": "https://phagesdb.org/media/emPics/Zebo_EMPic_GYoaWCE.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zebo_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zebo.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-26T13:50:41-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeboura", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "No specific motivation behind the phage name. ", "finder_name": "Elee Khalil", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "This phage was isolating out of soil from outside the doors of the University of Pittsburgh's Clapp Hall. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Zeboura formed rather round and slightly cloudy plaques, approximately between 0.5 and 1.5 mm in diameter. \r\n", "lysogeny_notes": "Based on the plaque morphology, phage Zeboura seems to be going through the lytic life cycle. However, this has not been discovered definitely yet because the phage DNA has not been sequenced yet. ", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeboura_Plaque_QEVll3j.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zeboura_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeboura_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-16T19:59:29-04:00", "date_modified": "2020-09-17T14:07:45-04:00" }, { "phage_name": "Zebra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Chose the name Zebra because it is our favorite animal and we would like to travel to Africa one day.", "finder_name": "Katelyn Karch and Tayla Lundberg", "found_city": "River Falls", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "44.850666 N", "found_GPS_long": "92.618759 W", "found_year": 2020, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The soil was moist, and the depth was 68mm, found underneath a bridge. \r\n\r\nAdopted the phage isolated from the soil from Konnor Auenthie.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large and clear plaques in comparison to other plaques within the class. There are no halos present around our plaques. Our plaques are uniform and similar in size to one another. Lastly, our plaques are clear not turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-10-08T16:17:29-04:00", "date_modified": "2021-01-28T11:04:39-05:00" }, { "phage_name": "Zebulon3", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name is pronouce Zeb-u-lon number3", "finder_name": "Luke Arduino", "found_city": "Grayson", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "My phage was found at the upper lake at Tribble Mill Park at northeast corner 30 yard south of the dam.The location marker is a wooden retaining wall on the path leading up the east side of the lake. My sample tpye is wet sand and dig 1 inch deep.The temperature was 90F.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "After pureify my phages by streaking meathod six times, the phages were 2mm in size and are classifled as lytic. It took 4 times to get a web. Flood just two plates had just enough DNA to isolate and purify phage DNA so, didn't have enough DNA to take a picture using the Electron Microscopy.Also somewhere along the way I made a misteak so my phage DNA didn't find purify and I don't have enough to do the step again. I am finish with the lab. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zebulon3_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zebulon3_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-15T13:25:26-05:00", "date_modified": "2020-06-18T11:26:51-04:00" }, { "phage_name": "Zed42", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named in a moment of last minute thinking based on fictional characters, and the answer to the ultimate question.", "finder_name": "Alex Randolph, Andrew Burlingame", "found_city": "Olympia", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.077502 N", "found_GPS_long": "122.968469 W", "found_year": 2013, "p_institution": { "institution_code": "EVER", "institution_name": "The Evergreen State College", "institution_logo": "https://phagesdb.org/media/institutions/Evergreen-Tree-Logo.png", "institution_url": "http://www.evergreen.edu/", "institution_city": "Olympia", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.072073", "institution_longitude": "-122.9766" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small circular fast growing plaques roughly 2mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-01-16T10:30:57-05:00", "date_modified": "2020-09-17T14:06:05-04:00" }, { "phage_name": "Zeddicus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Allison Rense", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446071 N", "found_GPS_long": "79.953429 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Phage Zeddicus was discovered next to a building in a bed containing bushes. Soil was collected about 2 inches deep under a mulch top layer. The soil was dry and crumbly.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques formed were clear and under 1mm in diameter.", "lysogeny_notes": "Clear plaques indicate that phage Zeddicus replicates by means of the lytic cycle as indicated by rapid plaque formation and clear plaque morphology.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeddicus_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zeddicus_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeddicus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeddicus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-06T11:34:22-04:00", "date_modified": "2020-09-17T14:07:45-04:00" }, { "phage_name": "Zedo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "the name Zedo came from my cousin's name, it is kind of a funny story why I chose this name, I had an argument with my cousin caple of weeks ago and I was so pissed at her that I told her, am gone name my virus after her name. and then i like the name and stick with it", "finder_name": "Mahlet Biratu", "found_city": "Quincy", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.27184 N", "found_GPS_long": "71.01133 W", "found_year": 2023, "p_institution": { "institution_code": "ENZC", "institution_name": "Eastern Nazarene College", "institution_logo": "https://phagesdb.org/media/institutions/eastern_nazarene.png", "institution_url": "https://enc.edu/", "institution_city": "Quincy", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Direct isolation from grass sample", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zedo_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-17T12:18:20-05:00", "date_modified": "2024-02-25T15:28:19-05:00" }, { "phage_name": "Zee1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after my name Zeeshaan", "finder_name": "Zeeshaan Haque", "found_city": "Hoffman Estates", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "42.061097 N", "found_GPS_long": "88.207274 W", "found_year": 2024, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil is dry due to the lack of rain the past few days. It was in a warm environment, so it wasn’t moist. I used a small shovel to dig up 4 inches into the ground and then started collecting the soil after the ground was 4 inches deep. The soil is grayish black in color. There were a few small rocks near the area. There were a few big clumps of soil that I collected.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Diameter: 1 mm\r\nLytic phage: Clear edge with Clear Center\r\nPhage grows more in 30 degrees Celsius than in 22 degrees Celsius.\r\nPFU/mL : 6.25x(10)^10", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zee1_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T13:41:17-05:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "Zeeb", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Wolf in arabic", "finder_name": "Omar Moghrabi", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.322443 N", "found_GPS_long": "75.580202 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in moist soil by a riverbed in Gloucester, Ottawa", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small to medium sized lytic plaques (clear)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sulfureus", "strain_name": "NRRL B-14730", "strain_species": { "id": 62, "genus": "Arthrobacter", "species_name": "sulfureus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 62, "genus": "Arthrobacter", "species_name": "sulfureus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeeb_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Zeeb_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Zeeb_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeeb_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeeb_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-18T08:41:11-04:00", "date_modified": "2025-07-31T14:00:55-04:00" }, { "phage_name": "Zeeba", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emily Greenhalgh", "found_city": "Provo", "found_state": "UT", "found_country": "USA", "found_GPS_lat": "40.2476 N", "found_GPS_long": "111.65 W", "found_year": 2009, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": true, "discovery_notes": "Date: 12 Sep 2009\r\nSite: North Side of Erying Science Center at BYU\r\nSample: Shaded area, top soil, planter box next to roots of tree. Underneath some berry bushes in a shaded area on the south side of the Clyde Building, BYU", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Small clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "BYU", "facility_name": "BYU DNA Sequencing Center", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 252, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/zeeba_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeeba_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/zeeba_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zeeba_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeeba_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zeeculate", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Zizile Zuke", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.49007 S", "found_GPS_long": "30.5643 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "the soil was taken from flower garden next to the pond by J block. the soil was black in color and was moist since the garden was being watered in the early morning by the gardner", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "the plate was full of clear zones of clearance. they were small circles across the plate. they were all clear and pure", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1997, "finishing_reactions": 0, "genome_length": 53828, "gcpercent": "63.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeeculate_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-07-13T16:54:15-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeeculate.gbf", "qced_genbank_file_date": "2018-07-13T16:54:15-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH632118", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/zeeculate_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zeeculate_EM.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeeculate.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zeeculate_Plaque_Thumb_f1gZRJF.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeeculate_EM_thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Zeeculate.dnam5", "date_added": "2016-07-11T16:08:36-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZeeKay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Both of our names together.", "finder_name": "Kayla Shuman, Zynovia Jaen", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.600278 N", "found_GPS_long": "87.913889 W", "found_year": 2017, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-01T15:22:03-04:00", "date_modified": "2020-09-17T14:09:13-04:00" }, { "phage_name": "Zeenon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ziomara Jurado", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.839756 N", "found_GPS_long": "96.647911 W", "found_year": 2013, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 361, "finishing_reactions": 0, "genome_length": 155292, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 232, "num_tRNAs": 35, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeenon_Final.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zeenon_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zeenon_CoverSheet.docx", "submitted_annotation_date": "2014-06-11T22:13:06-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KT321476", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeenon.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zeenon_0721.dnam5", "date_added": "2014-01-09T20:59:34-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeesoli", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "Zeesoli, can be dissected in two words, namely \"Zee-\", which stands from the initial of the discoverer, Zwelihle. In contrast, \"-soli\" is a latin word that means soil, where this phage was isolated from.", "finder_name": "Zwelihle Hlongwana", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.818285 S", "found_GPS_long": "30.944318 E", "found_year": 2017, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "In attempt of finding a cure for for tuberculosis, the phage that infects M. smegmatis was isolated from soil samples in Durban Westville campus. This was discovered in a moist soil, where there were some drops of water from a leaking pipe.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Three kinds of plaques were observed in an agar plate. Some forming a completely clear zone, and others forming a halo. The third ones formed a completely turbid plaques in the plate. After day 1 of incubation, the individual plaques had 1 - 1,5 mm diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeesoli_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeesoli_1.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeesoli_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeesoli_EM_Thumb.png", "dnam_file": null, "date_added": "2017-07-11T08:55:41-04:00", "date_modified": "2020-07-28T16:06:32-04:00" }, { "phage_name": "Zeewal", "old_names": "Laweez", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combined two dogs' names \"Lola\" and \"Weasel\".", "finder_name": "Hannah Lauhon", "found_city": "Honolulu", "found_state": "HI", "found_country": "US", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "UHIM", "institution_name": "University of Hawaii at Manoa", "institution_logo": "https://phagesdb.org/media/institutions/UHIM.png", "institution_url": "http://manoa.hawaii.edu/", "institution_city": "Honolulu", "institution_state": "HI", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Manoa Stream, under Dole St. Bridge, collected from stream.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "turbid, <1mm to 1mm diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeewal_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeewal_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-06T19:33:11-05:00", "date_modified": "2021-02-24T09:50:48-05:00" }, { "phage_name": "ZeeZee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I told the person across from our lab bench that I love sleeping. He suggested I name my phage ZeeZee to honor my love of sleeping.", "finder_name": "Maggie Bramblet and Sidra Katdare", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.008892 N", "found_GPS_long": "105.269511 W", "found_year": 2025, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "This phage was found in a soil sample collected from the University of Colorado - Boulder. The soil was collected on January 16th at around 10am.", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The stark outline and size (2.5mm)of the plaque indicate that this phage is one that rapidly divides and kills bacterial cells. This allows us to conclude that the phage is lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZeeZee_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/ZeeZee_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T13:22:05-04:00", "date_modified": "2025-04-23T13:22:05-04:00" }, { "phage_name": "Zeffrey", "old_names": "JayZ", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the \"Zeffrey\" bacteriophage after my longtime friend who helped me document the soil collection process. \"Zeffrey\" combines his first name, Jeffrey, with the initial of his last name, Z.", "finder_name": "Tracy Xie", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.220418 N", "found_GPS_long": "75.680119 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Zeffrey was found in Manotick, Ontario. The environmental sample was obtained from a footbridge overseeing a small creek. The soil was light brown and slightly sandy.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Zeffrey produces clear and consistently small diameter plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeffrey_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zeffrey_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zeffrey_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeffrey_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeffrey_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-17T07:43:19-04:00", "date_modified": "2024-02-25T15:28:23-05:00" }, { "phage_name": "Zeigle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We had started labeling tubes \"Z\" for ease, and found the phage near Seigle Hall. (Z+Seigle=Zeigle)", "finder_name": "Mark Jareczek + Aaryana Stringfellow", "found_city": "Clayton", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.6489 N", "found_GPS_long": "90.31205 W", "found_year": 2019, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "Soil sample was sandy and dry. It was clay like. Sample was found 5cm deep in a patch next to Seigle hall at Washington University in St. Louis.", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "BF", "temperate": false }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Large, clear, well-defined, plaques. ~6mm plaques in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-30", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 116, "finishing_reactions": 0, "genome_length": 44859, "gcpercent": "60.3", "end_type": "TREP", "repeat_length": 264, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 22, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeigle_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-06-23T17:52:30-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeigle_flat.txt", "qced_genbank_file_date": "2020-06-23T17:52:30-04:00", "isolation_host": { "genus": "Streptomyces", "species": "viridochromogenes", "strain_name": "DSM40736", "strain_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT684596", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeigle_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zeigle_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeigle.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeigle_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-17T22:02:18-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From the Arabic name meaning \"beautiful\", this phage is named after the daisies found growing near where the soil sample was originally collected. \r\n\r\nThis phage is also affectionately nicknamed Zuzu.", "finder_name": "Rama Sarakbi", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.264722 N", "found_GPS_long": "75.731944 W", "found_year": 2020, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Daisies were found growing near where the sample was collected. The soil sample was dark, soft and somewhat damp from the previous day's rain and the nearby pond water.", "isolation_temperature": 12, "growth_notes": "", "pcluster": { "cluster": "AU", "temperate": false }, "psubcluster": { "subcluster": "AU6" }, "morphotype": "SIPHO", "plaque_notes": "Plaques formed by the phage are clear and small to medium in size.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1198, "finishing_reactions": 0, "genome_length": 55017, "gcpercent": "50.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeina_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeina_Minimal_Final_67C3e4D.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zeina_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zeina_CoverSheet.pdf", "submitted_annotation_date": "2022-01-24T17:23:43-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeina.gbf", "qced_genbank_file_date": "2022-01-24T17:23:43-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OM913586", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeina_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zeina_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zeina_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeina.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeina_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/RS1_Thumbnail.png", "dnam_file": null, "date_added": "2020-11-20T09:53:04-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my recreational summer soccer team.", "finder_name": "Jean-Paul Azzi", "found_city": "Ottawa, Ontario", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.436667 N", "found_GPS_long": "75.50937 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Near the base of a tree in a forest of Park Patrick-Dugas, Ottawa, Canada.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Forms medium clear plaques after 2 days of incubation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-4225", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeit_Plaque_A1adBJg.pdf", "em_file": "https://phagesdb.org/media/emPics/Zeit_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Zeit_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeit_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeit_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-10-11T14:48:38-04:00", "date_modified": "2025-07-31T13:56:42-04:00" }, { "phage_name": "Zekai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Sekai means \"be humorous\" in Shona. ", "finder_name": "Ami G. Fall", "found_city": "Pittsburgh ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44 N", "found_GPS_long": "79.96 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "A soil sample was collected from an area outside of Posvar Hall on September 7th, 2016 at 9:46 am, from about two inches beneath the surface. The soil was relatively tough with living plants surrounding and contains organic matter. At the time of collection, it was approximately 75 degrees Fahrenheit.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Zekai shows uniform, pinpoint, clear plaques that are 1 mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zekai_Plaque_c9hQCda.png", "em_file": "https://phagesdb.org/media/emPics/Zekai_EMPic_QsABbu0.png", "digest_file": "https://phagesdb.org/media/digestPics/Zekai_Digest_HJ1gpAz.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zekai_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zekai_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-19T12:50:44-04:00", "date_modified": "2020-09-17T14:07:45-04:00" }, { "phage_name": "Zeke", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michael Sapienza", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444074 N", "found_GPS_long": "79.957633 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Contains two morphologies:\r\nLarge plaques and pinprick plaques\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeke_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeke_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeke_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeke_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-10-07T15:24:29-04:00", "date_modified": "2020-07-28T14:21:39-04:00" }, { "phage_name": "Zeke21", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after one of my favorite football Players", "finder_name": "Drew Rase", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": null, "discovery_notes": "I found it in a dirt pile during the day.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-11T08:40:40-05:00", "date_modified": "2025-07-11T12:34:12-04:00" }, { "phage_name": "ZekeeTamba", "old_names": "Zekee", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jessica Tamba", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9198 N", "found_GPS_long": "77.0188 E", "found_year": 2016, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "at first it was many different morphologies, but after picking one plaque and isolating it, the morphology became the same. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZekeeTamba_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZekeeTamba_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-17T14:20:55-05:00", "date_modified": "2020-09-17T14:08:04-04:00" }, { "phage_name": "Zelda", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Rohan Samarth", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.6435 N", "found_GPS_long": "90.315167 W", "found_year": 2011, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "The soil was slightly damp and around 13 cm deep. The air temperature was around 75°F and it was sunny. There was little foot traffic seen in the area or disturbance in the ground. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "average plaque size of 3.0mm. There was slight variation and slightly fuzzy around the edges, however there were no visible haloes. The plaques showed no turbidity.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-10-18", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 262, "finishing_reactions": 5, "genome_length": 68939, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zelda_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-20T09:44:11-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zelda.gbf", "qced_genbank_file_date": "2018-10-20T09:44:11-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MK112555", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zelda_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zelda_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zelda_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zelda.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zelda_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zelda_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zelda.dnam5", "date_added": "2011-10-17T10:53:46-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zelezo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Thomas Pittman", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.791667 N", "found_GPS_long": "79.9475 W", "found_year": 2011, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "Found within Bogardens, a shared community garden. Various vegetables and fruits were being grown near the sample. The soil was not cohesive, but was not completely dry. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "2.5mm clear plaques.\r\n24 hour incubation period in 37°C conditions\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zelezo_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zelezo_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zelezo_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zelezo_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-11-29T04:55:28-05:00", "date_modified": "2020-06-01T20:21:05-04:00" }, { "phage_name": "Zelink", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my favorite childhood game series.\r\n\r\nZelda, combined with the main character, link.\r\n\r\nHence, Zelink.\r\n", "finder_name": "Stefanie Moncayo", "found_city": "Tenafly", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.928577 N", "found_GPS_long": "73.96941 W", "found_year": 2017, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": true, "discovery_notes": "The soil was next to a small creek at a park, called The Roosevelt Commons. \r\n\r\nThe sample was collected at 9:57 pm, and the temperature was 60°F.\r\n\r\nThe soil was very dark, moist and thick. Many worms were living in the soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are very small and low in titer; somewhat difficult to extract DNA. Plaques are also very light, sometimes difficult to see. However, dilutions are very consistent.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-11-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 659, "finishing_reactions": 0, "genome_length": 111740, "gcpercent": "60.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "ATCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 236, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zelink_CompleteNotes_zQ68hUO.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zelink_Minimal_Final_CEKVfwN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zelink_Authors_8ItgwZ6.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zelink_CoverSheet_qRSEVQg.pdf", "submitted_annotation_date": "2018-07-23T18:04:28-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zelink_flat3.txt", "qced_genbank_file_date": "2018-07-23T18:04:28-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH669017", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zelink.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-24T10:55:35-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZellyZest", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I used the first letter of my name and a cool adjective.", "finder_name": "Zshonel Auma", "found_city": "Dismal Swamp (South Mills)", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "30.2136 N", "found_GPS_long": "76.2068 W", "found_year": 2015, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "The soil sample collected in a different state.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid circle plaques with defined edges all over the plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-01T16:37:33-05:00", "date_modified": "2020-09-17T14:06:18-04:00" }, { "phage_name": "Zem622", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Z - Zoey, the name of Olivia's dog\r\nE - Eddie, the name of Olivia's dog\r\nM - Maui, the name of Vanessa's cat\r\n6 - The day of the month Vanessa was born\r\n22 - The day of the month Olivia was born", "finder_name": "Vanessa Lester and Olivia Defeo", "found_city": "Spokane Valley", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.61257 N", "found_GPS_long": "117.22847 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage was found in a backyard in Spokane Valley, on the side of the house in dry soil.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Zem622 forms large circular plaques that consist of two rings, the outer ring being thinner than the inner ring and more transparent.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zem622_Plaque_kJ07hJH.png", "em_file": "https://phagesdb.org/media/emPics/Zem622_EMPic_3tfHSys.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zem622_plaque_thumb.ext.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zem622_EMPic_Thumb.ext.png", "dnam_file": null, "date_added": "2024-03-19T13:23:23-04:00", "date_modified": "2025-08-01T10:53:36-04:00" }, { "phage_name": "Zema", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a spin-off of the name of a character from a Disney movie.", "finder_name": "Maya Mayfield", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.921667 N", "found_GPS_long": "77.019167 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "The soil sample was dry with various size dirt clumps.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage has a uniquely varying morphology. The higher the dilution, the smaller the plaque size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-16T07:58:13-04:00", "date_modified": "2020-09-17T14:08:23-04:00" }, { "phage_name": "Zemanar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Anna E. Moulis", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38 18.337 N", "found_GPS_long": "77 28.604 W", "found_year": 2009, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-03-17", "seq_facility": { "short_name": "JGI", "facility_name": "Joint Genomics Institute", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "Sanger", "method_name": "Sanger" }, "coverage": null, "finishing_reactions": null, "genome_length": 71092, "gcpercent": "68.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 95, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JF704104", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Zemanar_Restriction_Map.jpg", "fasta_file": "https://phagesdb.org/media/fastas/Zemanar.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zemlya", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Rebekah Dedrick & Kaitlin Mitchell", "found_city": "Houston", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "29.760400 N", "found_GPS_long": "95.372000 W", "found_year": 2010, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2010-02-24", "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 75, "finishing_reactions": 9, "genome_length": 51077, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGGCCAGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KC700558", "refseq_accession": "NC_021339", "plaque_file": "https://phagesdb.org/media/plaquePics/Zemlya.tiff", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zemlya.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zemlya_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-18T10:44:06-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zena17", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage came from me.", "finder_name": "Osayi Ize-iyamu", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "This phage was collected 11-09-13 at a depth of 6.5cm and a temperature of seventy nine degree fahrenheit from Blackburn University Center at 2397 6th St. NW Washington DC.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque is very small in size and round. About 46 plaques formed on a plate. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zena17_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zena17_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-06T15:46:26-05:00", "date_modified": "2020-06-19T19:52:25-04:00" }, { "phage_name": "Zencia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kevin jaredic", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Heterogeneous\r\n1-1.5 mm length", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "sp.", "strain_name": "ISAT203", "strain_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zencia_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:28:07-05:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Zendaya", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage Zendaya, after the famous actress.", "finder_name": "Kate Yarrish, Jorun Downing", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.661343 N", "found_GPS_long": "117.405767 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We discovered our phage on the Gonzaga campus, off the south shore of Lake Arthur. It was near foliage close to the water. The soil was damp and cold, as it was winter. There was some snow on the ground, but not where we discovered our phage. It was cold outside, but sunny and fairly dry.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaque morphology ranged from spots between 2 mm and 5 mm, with the majority being closer to 5 mm. Each spot is round. There are a few isolated small spots, however, most of them are fairly large, with the dimensions previously listed.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zendaya_Plaque_pod7L3Q.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zendaya_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-06T08:09:18-04:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "Zenitsu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after an anime character.", "finder_name": "Easterwood's Bio 201 class", "found_city": "Charlotte", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.165653 N", "found_GPS_long": "80.759077 W", "found_year": 2022, "p_institution": { "institution_code": "QUCH", "institution_name": "Queens University of Charlotte", "institution_logo": "https://phagesdb.org/media/institutions/QueensUniversityOfCharlotte.jpg", "institution_url": "http://www.queens.edu/", "institution_city": "Charlotte", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.188490", "institution_longitude": "-80.83339" }, "enriched_sample": true, "discovery_notes": "Found in the professor's chicken coop.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA2" }, "morphotype": "", "plaque_notes": "Large clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2315, "finishing_reactions": 0, "genome_length": 40386, "gcpercent": "62.1", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zenitsu_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zenitsu_Minimal_Final_FRs7mdn.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zenitsu_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zenitsu_CoverSheet.docx", "submitted_annotation_date": "2023-08-30T01:37:45-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zenitsu_flat_ydX2Pg8.txt", "qced_genbank_file_date": "2023-08-30T01:37:45-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR553893", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zenitsu.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-01T11:47:21-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zenmaster", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nicole Sims and Jackson Carter", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.008 N", "found_GPS_long": "105.272 W", "found_year": 2021, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Our soil sample was obtained from Duane Physics and Astrophysics building at University of Colorado Boulder.", "isolation_temperature": 15, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "We had clear plaques indicating a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zenmaster_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zenmaster_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-17T11:00:18-05:00", "date_modified": "2022-03-16T11:02:28-04:00" }, { "phage_name": "ZenMiraj", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nicki Mirabilis shortened to Miraj preceded by Zen.", "finder_name": "Elvin Odamtten, Dasith Perera", "found_city": "Catonsville", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.2554 N", "found_GPS_long": "76.7107 W", "found_year": 2023, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Initial soil sample resulted in contamination despite experimental alterations.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques initially looked like they had contamination growing on top of them. Plaques were eventually able to come out correct after using donor phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/ZenMiraj_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/S6G9_04-thumb.png", "dnam_file": null, "date_added": "2023-11-10T09:57:00-05:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "Zenobia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zenobia is a play on my name Zaynab.", "finder_name": "Zaynab Abdullah", "found_city": "Durham", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.95175 N", "found_GPS_long": "78.935056 W", "found_year": 2018, "p_institution": { "institution_code": "DTCC", "institution_name": "Durham Technical Community College", "institution_logo": "https://phagesdb.org/media/institutions/DurhamTechLogo.png", "institution_url": "http://www.durhamtech.edu/", "institution_city": "Durham", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.975438", "institution_longitude": "-78.88074" }, "enriched_sample": true, "discovery_notes": "Zenobia was found outside, in my uncle's backyard under the deck, under muddied grass area.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-30T11:42:08-04:00", "date_modified": "2020-09-17T14:09:52-04:00" }, { "phage_name": "Zenon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Monique Mills and Jessica laytart", "found_city": "Milbridge", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.555822 N", "found_GPS_long": "67.863971 W", "found_year": 2014, "p_institution": { "institution_code": "UMMA", "institution_name": "University of Maine, Machias", "institution_logo": "https://phagesdb.org/media/institutions/UMM-Clippers-Logo-web.jpg", "institution_url": "http://www.umm.maine.edu/", "institution_city": "Machias", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.711682", "institution_longitude": "-67.45805" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "R", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-01-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2672, "finishing_reactions": 0, "genome_length": 71726, "gcpercent": "56.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zenon_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zenon_Minimal_Final_tTbm8fP.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zenon_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zenon_CoverSheet_dydxpsc.txt", "submitted_annotation_date": "2015-11-05T16:31:44-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zenon_flat.txt", "qced_genbank_file_date": "2017-04-20T12:25:24-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KY969628", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zenon_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Zenon_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zenon_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zenon.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zenon_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zenon_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zenon.dnam5", "date_added": "2014-12-10T14:31:25-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zenry", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zenry is a mix of the names Zak and Henry", "finder_name": "Zak Ray an Henry Barber", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666777 N", "found_GPS_long": "117.423 E", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "No TEM image retained", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3mm wide with dark circles around plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zenry_Plaque_f2kRF1L.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zenry_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T14:47:26-04:00", "date_modified": "2020-09-17T14:10:52-04:00" }, { "phage_name": "Zenteno07", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Last name of one of the students.", "finder_name": "Oscar Zenteno and Patrice Wilson", "found_city": "Round Rock", "found_state": "TX", "found_country": "US", "found_GPS_lat": "30.532917 N", "found_GPS_long": "97.675639 W", "found_year": 2019, "p_institution": { "institution_code": "ASTN", "institution_name": "Austin Community College Highland Campus", "institution_logo": "https://phagesdb.org/media/institutions/AustinCC.jpg", "institution_url": "https://www.austincc.edu/campuses/highland-campus/", "institution_city": "Austin", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B13" }, "morphotype": "SIPHO", "plaque_notes": "Medium, turbid", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-30", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 873, "finishing_reactions": 0, "genome_length": 70412, "gcpercent": "69.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 106, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zenteno07_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-04-28T12:42:36-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zenteno07.gbf", "qced_genbank_file_date": "2022-04-28T12:42:36-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON392167", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zenteno07.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-20T16:19:29-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZenTime222", "old_names": "Zen222", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Karolina Czarnecki, Connor McMahon", "found_city": "Fort Myers", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "26.463990 N", "found_GPS_long": "81.775300 W", "found_year": 2013, "p_institution": { "institution_code": "FGCU", "institution_name": "Florida Gulf Coast University", "institution_logo": "https://phagesdb.org/media/institutions/fl-gulf-coast-logo-mod.png", "institution_url": "http://www.fgcu.edu/", "institution_city": "Fort Myers", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "26.464294", "institution_longitude": "-81.77359" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "T", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 290, "finishing_reactions": 0, "genome_length": 43344, "gcpercent": "66.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAAACGCCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZenTime222_CompleteNotes_Zab3k2r.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZenTime222_Minimal_Final_cWQuX1R.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/ZenTime222_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/ZenTime222_CoverSheet.pdf", "submitted_annotation_date": "2016-05-15T23:09:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/ZenTime222_flat.txt", "qced_genbank_file_date": "2017-05-24T15:34:59-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF155936", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zen222_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zen222_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZenTime222.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zen222_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/ZenTime222.dnam5", "date_added": "2013-11-21T09:43:24-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeny", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Sphindile", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.817189 S", "found_GPS_long": "30.94667 E", "found_year": 2012, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "found in the pot plant in which the soil had compost and the soil was black in colour in the property of university of kwazulu natal green house durban south africa,soil taken 3-4 cm deep in the pot plant and temperature 25°C", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small plaques and round in shape,clear plaque were observed", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-07-20T06:16:02-04:00", "date_modified": "2017-09-24T13:27:08-04:00" }, { "phage_name": "Zenyatta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We got the name from a popular video game that our group likes to play.", "finder_name": "A. Miller, S. Ostrove, J. Holgersen, M. Ibarreta", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.3896 N", "found_GPS_long": "72.52806 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Sample collected outside of our university library. The area is surrounded by multipole large buildings and high traffic walkways.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1mm in diameter, clear, and with smooth edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-28T12:18:48-04:00", "date_modified": "2025-04-04T11:37:40-04:00" }, { "phage_name": "Zeoh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my friends from home. ", "finder_name": "Julianna Boyd", "found_city": "Pittsburgh ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.42473 N", "found_GPS_long": "79.938348 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was very moist and the temperature was high 60s/low 70s. The weather outside was humid and sunny.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Forms small and clear plaques. Plaque morphology is identical. ", "lysogeny_notes": "Due to the formation of clear plaques, this phage is a lytic phage. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeoh_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeoh_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zeoh_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeoh_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeoh_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-12T13:20:46-04:00", "date_modified": "2020-09-17T14:08:39-04:00" }, { "phage_name": "Zeph", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Zeph is short for the name Zephaniah which is what I hope to name one of my kids one day, so I wanted to name my phage that after something that will soon mean a lot to me.", "finder_name": "Danielle-Rae Lockhart", "found_city": "Tampa", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "28.59 N", "found_GPS_long": "82.2237 W", "found_year": 2023, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": true, "discovery_notes": "Collected in a compost area where there were many leaves and branches, was moist, and was collected in 108E.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DJ", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are colonel and are small, and lytic, and they are clear.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-12-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 722, "finishing_reactions": 0, "genome_length": 61427, "gcpercent": "51.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGCTCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 94, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeph_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-05-07T11:30:43-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeph_flat.txt", "qced_genbank_file_date": "2024-05-07T11:30:43-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978808", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeph_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeph.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-18T09:58:02-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zephaniah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage is named Zephaniah after the prophet who wrote the book of Zephaniah in the bible. I named my phage Zephaniah because I liked the uniqueness of the name and relates back to Christianity.", "finder_name": "Molly Hayes", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "34.529611 N", "found_GPS_long": "83.987889 W", "found_year": 2018, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfNorthGeorgia.jpg", "institution_url": "http://www.ung.edu/", "institution_city": "Dahlonega", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "34.527800", "institution_longitude": "-83.98442" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected from under a tree off. The soil was slightly damp and brown. It was 26.6 degrees Celsius, shady, cloudy, and 76% humidity.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Zephaniah is about 2 mm in diameter and the turbidity is very high. The plaques are small making the burst size small as well. The plaques are all circular, considerably small, and quite blurry. They resemble the shape and size of poppy seeds. Since the plaques are foggy looking, this indicates Zephaniah is temperate. In other words my phage are capable of lysing some fraction of the bacteria it infects and repress the DNA. Because the burst size is small this indicates there is a smaller amount of phage produced per infected bacteria.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zephaniah_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zephaniah_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zephaniah_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zephaniah_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-28T22:49:53-05:00", "date_modified": "2020-09-17T14:09:38-04:00" }, { "phage_name": "Zephren", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the Spokane Zephyr soccer club", "finder_name": "Katie Skaggs & Mackenzie Ediger", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66697 N", "found_GPS_long": "117.4027 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil was taken from outside of the Herak Center of Engineering bushes by dead plants on Gonzaga University's campus. It was 34 degrees F outside. The soil was hard and damp.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaques were less than a mm in size. They were round and mostly clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zephren_Plaque_Qc9areM.png", "em_file": "https://phagesdb.org/media/emPics/Zephren_EMPic_bzLcunb.png", "digest_file": "https://phagesdb.org/media/digestPics/Zephren_Digest_bKE1YLG.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zephren_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zephren_EMPic_Thumb.png", "dnam_file": null, "date_added": "2025-02-25T11:32:26-05:00", "date_modified": "2025-04-30T15:35:26-04:00" }, { "phage_name": "Zephryus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage morphology appears cloudy so we named our phage after the God of clouds, Zephryus.", "finder_name": "Lena Sadler and Taylor Persall", "found_city": "Plano", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.033889 N", "found_GPS_long": "96.676389 W", "found_year": 2019, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "Soil was taken beneath a thin layer of mulch. \r\nAmbient temperature was 47°F.\r\nHumidity was 41%.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are <1mm in diameter.\r\nPlaques appear turbid with a small clear area in the center", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zephryus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zephryus_EMPic_hqI8HBu.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zephryus_Digest_j3vKp6q.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zephryus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zephryus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-03-07T20:19:40-05:00", "date_modified": "2020-09-17T14:11:26-04:00" }, { "phage_name": "Zephy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose the name \"Zephy\" because it is very windy in the location this phage was discovered in and it's name means a cool, light breeze.", "finder_name": "Leisha Peddu,Ellie Zhao, Olivia Foo, Hope Crompton", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.39395 N", "found_GPS_long": "72.521406 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "collected from the soil in the Orchard Hill Observatory.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, 2-3mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zephy_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/zephy_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-04-02T13:04:13-04:00", "date_modified": "2025-04-04T11:37:40-04:00" }, { "phage_name": "Zephyr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alexander Lu and Brandon Tran", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.645911 N", "found_GPS_long": "90.314604 W", "found_year": 2011, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "Wet, muddy soil, approximately 1 cm deep, at 23 degrees Celsius ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Average 6mm plaques\r\nClear centers with cloudy rim", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-10-18", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 250, "finishing_reactions": 13, "genome_length": 52320, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KX712238", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zephyr_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Zephyr_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zephyr_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zephyr.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zephyr_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zephyr_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-10-11T15:36:04-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zepp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zepp is short for (Led) Zeppelin.", "finder_name": "Andrew Brown, Jamie Martinez, and Cassidy Paige", "found_city": "Pensacola", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "30.55137 N", "found_GPS_long": "87.21576 W", "found_year": 2018, "p_institution": { "institution_code": "UWFL", "institution_name": "University of West Florida", "institution_logo": "https://phagesdb.org/media/institutions/UWestFlorida.png", "institution_url": "http://uwf.edu/", "institution_city": "Pensacola", "institution_state": "FL", "institution_country": "United States", "institution_latitude": "30.546962", "institution_longitude": "-87.21669" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA5" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-04-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 518, "finishing_reactions": 0, "genome_length": 40189, "gcpercent": "63.6", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "Zepp was sequenced as part of UWF 2018 DOGEMS pool.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zepp_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zepp_Minimal_Final_a9rZeWg.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zepp_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zepp_CoverSheet.pdf", "submitted_annotation_date": "2020-01-02T18:21:15-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/zepp.gbf", "qced_genbank_file_date": "2020-01-02T18:21:15-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN908686", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zepp_EMPic.docx", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zepp.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zepp_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-12-03T20:45:02-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeppelin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Stephen Rogers", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.844611 N", "found_GPS_long": "71.438053 W", "found_year": 2011, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zeppelin_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zeppelin_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-10-27T05:40:22-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zerene", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Charliah Morgan", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-14T11:19:45-05:00", "date_modified": "2020-09-17T14:08:23-04:00" }, { "phage_name": "Zerg", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kristi Bartholomay and Abby Lowery", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.009 N", "found_GPS_long": "105.2685 W", "found_year": 2013, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "9/20/13\r\n10:11 a.m.\r\n12.8°C\r\nFlower bed with mulch near Muenzinger biology building", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Turbid\r\n1.5mm\r\n37°C for 48 hours\r\n", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-06-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 600, "finishing_reactions": 0, "genome_length": 58079, "gcpercent": "61.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTAGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zerg_CompleteNotes_3Q9h4SK.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zerg_Minimal_Final_OL4H8Cl.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zerg_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zerg_CoverSheet.pdf", "submitted_annotation_date": "2018-10-19T12:42:24-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zerg_flat.txt", "qced_genbank_file_date": "2018-10-19T12:42:24-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112556", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zerg_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zerg_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zerg_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zerg.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zerg_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zerg_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-18T11:19:50-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zerneshlia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jordan Archer", "found_city": "", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "46.986667 N", "found_GPS_long": "92.270833 W", "found_year": 2012, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": null, "discovery_notes": "With the restriction digest, the 7th through the 13th lanes are my digest. For the Final DNA Master photo, I uploaded my QC gel that was run. The 8th lane from the left contains my DNA.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "If left in the incubator for more than 24 hrs, the plaques become hazy around the edges. The plaques have been large in size. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zerneshlia_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zerneshlia_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zerneshlia_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-03T09:59:24-05:00", "date_modified": "2017-09-12T10:27:22-04:00" }, { "phage_name": "Zero", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-08T05:47:23-05:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "ZeroPatience", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named ZeroPatience because along the way of isolating our phage, we ran into a lot of struggles and had to restart many times. ZeroPatience seemed appropriate after all the issues we went through and because we had zero patience after working with it for so long. ", "finder_name": "Aubrey Schatz. Julieanna Stickler, Autumn Hurd", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "Sample of soil was collected on Doane University Campus. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaque size was very tiny. It was about pinprick size or about .05 cm in diameter. The plaques were clear and very round. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/ZeroPatience_EMPic_EmadKg6.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-06T19:08:45-05:00", "date_modified": "2020-09-17T14:07:55-04:00" }, { "phage_name": "Zerstoerer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phages destroy bacteria", "finder_name": "Brianna Ahrndt", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.852577 N", "found_GPS_long": "92.615071 W", "found_year": 2013, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Next to Parker Hall on River Falls campus\r\nPCR results suggest it may be in cluster A, subculture A10", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large plaques, no halo", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zerstoerer_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zerstoerer_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-06T15:43:38-05:00", "date_modified": "2020-09-17T14:09:18-04:00" }, { "phage_name": "Zerstorer", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "German word for destroyer, and since this phage forms large plaques destroying the host, the name is fitting.", "finder_name": "Johnathon Schiebel", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442456 N", "found_GPS_long": "79.95355 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "The soil sample was isolated from a flower bed with a small tree in it outside of Hillman Library. Sample was taken May 9, 2016 at 7:25 am. Weather was sunny and 65 degrees Fahrenheit. Soil was dark brown and had some root and grass plant matter", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-06-11T09:09:34-04:00", "date_modified": "2017-10-19T12:28:03-04:00" }, { "phage_name": "Zesty", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Zesty\" was chosen in reference to our favorite type of pizza, margherita pizza.", "finder_name": "Josey Clancy, Georgi Brady", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.667749 N", "found_GPS_long": "117.402527 W", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a dirt patch under a tree in late January. There was a layer of snow over the soil which was moved away. Soil was partially frozen.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are round and range from 1-3mm in diameter with edges that are distinguishable but thin.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zesty_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zesty_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-25T19:51:35-04:00", "date_modified": "2021-01-28T11:04:23-05:00" }, { "phage_name": "ZestyBoi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Taylor Beck", "found_city": "Evansville", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "37.9721 N", "found_GPS_long": "87.5283 W", "found_year": 2019, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 2, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZestyBoi_Plaque.TIF", "em_file": "https://phagesdb.org/media/emPics/ZestyBoi_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/ZestyBoi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-02T14:35:51-05:00", "date_modified": "2020-09-17T14:11:09-04:00" }, { "phage_name": "Zeta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I picked a Greek letter to name my phage.", "finder_name": "Kenneth Nguyen", "found_city": "Los Angeles", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.019313 N", "found_GPS_long": "118.285967 W", "found_year": 2021, "p_institution": { "institution_code": "USOC", "institution_name": "University of Southern California", "institution_logo": "https://phagesdb.org/media/institutions/usc.png", "institution_url": "https://www.usc.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The phage was found at a tree near the Zumberge Hall of Science of the University of Southern California.", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Based on imaging from transmission electron microscopy, the phage appears to have a 50-60 nm icosahedral head and a single, 110-120 nm long tail.", "lysogeny_notes": "The phage appears to have a lytic life cycle.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Lambda_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Lambda_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Lambda_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-19T16:23:56-05:00", "date_modified": "2022-03-16T11:01:50-04:00" }, { "phage_name": "Zeta1847", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage named for the great Zeta Psi fraternity founded in 1847. The phage was taken near the fraternity.", "finder_name": "Jordan Brozek", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.84 N", "found_GPS_long": "96.65 W", "found_year": 2015, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "Phage taken from under tree outside of Olin Science Hall", "isolation_temperature": 0, "growth_notes": "", "pcluster": { "cluster": "EH", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Small circle plaques.", "lysogeny_notes": "Zeta1847 does form a lysogen. When spotted on M. paraoxydans, there was clearing and subsequent mesa growth which was streaked and patched to confirm the lysogen.", "seq_finished": true, "date_finished": "2016-05-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 576, "finishing_reactions": 0, "genome_length": 47921, "gcpercent": "71.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGGTGCGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 75, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeta1847_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-04-23T17:23:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeta1847.gbf", "qced_genbank_file_date": "2018-04-23T17:23:42-04:00", "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH271320", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeta1847_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zeta1847_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeta1847.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zeta1847_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Zeta1847.dnam5", "date_added": "2015-12-01T16:36:29-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeter", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My last name", "finder_name": "Daniel Zeter", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.5498 N", "found_GPS_long": "97.1143 W", "found_year": 2016, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Sand %: 16.67%\r\nSilt %: 63.33%\r\nClay %: 13.3%\r\npH: 7\r\n15.56% Water \r\nThis phage was adopted from a plaque found in a sample from Natalie Widdows. She choose her soil sample from Burleson Quadrangle at Baylor University.\r\n", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeter_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zeter_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Zeter_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeter_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeter_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-12-05T22:29:29-05:00", "date_modified": "2020-09-17T14:07:19-04:00" }, { "phage_name": "Zetsubo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I had a hard time getting to this point.", "finder_name": "Valaree Ford", "found_city": "Stafford", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.434078 N", "found_GPS_long": "78.86031 W", "found_year": 2018, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "Soil type was rock and dense.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-08T22:34:33-05:00", "date_modified": "2018-11-08T22:34:33-05:00" }, { "phage_name": "Zetzy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for the phage is the nickname for my past twin brother, who always made fun of me for being a nerd.", "finder_name": "Tessa Retzlaff", "found_city": "Clinton", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "42.750243 N", "found_GPS_long": "102.333481 W", "found_year": 2013, "p_institution": { "institution_code": "CHAD", "institution_name": "Chadron State College", "institution_logo": "https://phagesdb.org/media/institutions/ChadronLogo.gif", "institution_url": "http://www.csc.edu/", "institution_city": "Chadron", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "42.821499", "institution_longitude": "-103.0018" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected about an inch deep in the middle of an alfalfa field. After a nice rain the night before. The time was at 9:16 in the morning at 26C. More than one phage was in this soil sample.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "after 48hrs\r\ndiameter: 3mm\r\nboth turbid and clear ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-01-29", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 83, "finishing_reactions": 6, "genome_length": 48229, "gcpercent": "64.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 81, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zetzy_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-11-28T12:03:50-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zetzy_flat.txt", "qced_genbank_file_date": "2018-11-28T12:03:51-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MK279903", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zetzy_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zetzy.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zetzy_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-11-22T10:14:40-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeupolox", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the bacteriophage is inspired by my dogs. It is a union between the names Zeus and Apolo.", "finder_name": "Alondra Jaime", "found_city": "Humacao", "found_state": "PR", "found_country": "Puerto Rico", "found_GPS_lat": "18.14027 N", "found_GPS_long": "65.80139 W", "found_year": 2024, "p_institution": { "institution_code": "UTRB", "institution_name": "Universidad Ana G. Mendez, Gurabo campus", "institution_logo": "https://phagesdb.org/media/institutions/uturabo.jpg", "institution_url": "", "institution_city": "Gurabo", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil sample was taken in Humacao, Puerto Rico on September 11, 2024 at 8:04am. The temperature was 31.1C and the relative humidity was 88%. It was taken from my backyard, the soil was damp and full of small branches and stones.", "isolation_temperature": 31, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage plaques are small (1-2 mm in diameter), circular, clear centers and with well defined edges. They are evenly distributed across the agar surface.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-17T10:37:18-05:00", "date_modified": "2025-04-04T11:37:24-04:00" }, { "phage_name": "Zeus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jacob Simon", "found_city": "Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.544582 N", "found_GPS_long": "92.072065 W", "found_year": 2011, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": null, "discovery_notes": "Found under a giant compest pile of rotting trees. About 100 yards from the egde of the bayou.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeus_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zeus_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-10-08T12:40:45-04:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "Zeus04", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zeus was the name of the pet that played in the backyard that I collected the soil from", "finder_name": "Zusi,Kaelyn Jean", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.51496 N", "found_GPS_long": "81.60236 W", "found_year": 2024, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small temperate", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-10T13:05:00-05:00", "date_modified": "2025-04-04T11:37:44-04:00" }, { "phage_name": "Zeus1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Abby Waidelich", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "This phage was collected from a mud-like, high traffic area, construction zone with fairly moist moisture content", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2-3 mm in diameter and completely clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zeus1_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zeus1_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-12-11T16:23:32-05:00", "date_modified": "2020-09-17T14:05:25-04:00" }, { "phage_name": "Zeuska", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Herold", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.824047 N", "found_GPS_long": "71.403114 W", "found_year": 2013, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Sample obtained from cool soil lying under a tanbark top layer, all found underneath an overhanging tree.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Predicted cluster type: D, F1, or F2", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-12-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3844, "finishing_reactions": 0, "genome_length": 53598, "gcpercent": "63.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "Some of the reads from this project indicate that a portion of the genome has been deleted in a subset of the population. About 15% of the reads show this deletion. The deletion is 1803 bp and runs from position 26961 to 28763 (inclusive). There is a 12 bp sequence (CGGGCTGCTGGG) located near these two positions that is collapsed into one copy in the deletion version of the genome.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 93, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeuska_CompleteNotes_JT1vEET.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zeuska_Minimal_Final_aB8pBjW.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zeuska_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zeuska_CoverSheet_qzOSGiR.pdf", "submitted_annotation_date": "2019-02-13T12:27:36-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zeuska.gbf", "qced_genbank_file_date": "2019-02-13T12:27:36-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MK524506", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeuska_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zeuska_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zeuska_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zeuska.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeuska_Plaque_Thumb_9GZNFF5.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeuska_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-03T09:45:29-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zeusy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zeus: Came from greek god", "finder_name": "CFKJ", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "Soil was slightly moist, dark brown, rich\r\n45 degrees\r\nSunny and dry", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Titer: 1.8x10^10 pfu/ml\r\nDiameter: .57 cm\r\nLytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-03-20T10:56:09-04:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Zeze", "old_names": "Flacko", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jason Paratore, Andrew Cabato", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "47.666991 N", "found_GPS_long": "117.402261 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zeze_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zeze_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zeze_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zeze_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zeze_EMPic_thumb.png", "dnam_file": null, "date_added": "2019-05-02T14:32:27-04:00", "date_modified": "2020-09-17T14:11:55-04:00" }, { "phage_name": "Zhadum", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Z'ha'dum is the Shadow home world from the TV show, Babylon 5.", "finder_name": "Norah Giles", "found_city": "Worcester", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.27716 N", "found_GPS_long": "71.80667 W", "found_year": 2022, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": true, "discovery_notes": "The sample in which Zhadum was found in was from a water puddle near Salisbury Pond in Institute Park, Worcester MA.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque morphology is medium to large in size and fairly clear in color.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhadum_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-13T08:08:54-04:00", "date_modified": "2022-10-13T08:08:54-04:00" }, { "phage_name": "Zhafia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combination of two friends' names.", "finder_name": "Kira Bifone, Giselle Tevlin", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.668573 N", "found_GPS_long": "117.403505 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "On August 30, 2022, when the soil sample was collected the soil was slightly damp. It was easy to scoop and found surrounded by grass. The weather was warm.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EG", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques from the phage Zhafia are small and cloudy around the edges. They range in size from 1 mm to 5mm when grouped in close proximity.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-09-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 112, "finishing_reactions": 0, "genome_length": 62287, "gcpercent": "66.9", "end_type": "TREP", "repeat_length": 199, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 109, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zhafia_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-08-28T11:44:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zhafia_flat.txt", "qced_genbank_file_date": "2025-08-28T11:44:40-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PX307258", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhafia_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zhafia_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zhafia.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zhafia_plauqe_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zhafia_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-11-22T09:13:04-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zhage", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zoe Raugust", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "58.5 N", "found_GPS_long": "12.06 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "Found under a layer of frozen soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-04-07T15:45:39-04:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "Zhames", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From Zhang and James", "finder_name": "James S, Mingze Z", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "It's clear.\r\nThe diameter is 0.2cm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhames_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zhames_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zhames_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-03-11T11:34:57-04:00", "date_modified": "2025-09-12T10:30:15-04:00" }, { "phage_name": "Zhang", "old_names": "HSI123", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "HSI CHANG", "found_city": "SAINT LOUIS", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Webp.net-resizeimage_2.png", "dnam_file": null, "date_added": "2019-02-05T15:46:46-05:00", "date_modified": "2019-03-01T12:42:51-05:00" }, { "phage_name": "Zhangnchen", "old_names": "HTHJ", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from me and my partner's initials.", "finder_name": "Hana Tambrin", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.421206 N", "found_GPS_long": "86.922389 E", "found_year": 2016, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "I found it on a garden soil at the back of the lab building during a sunny day.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaque is clear-yellowish in color. It has diameter around 0.3cm and smooth circular shape.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/HTHJ_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zhangnchen_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/HTHJ_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZhangNChen_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zhangnchen_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-15T20:25:55-05:00", "date_modified": "2020-09-17T14:07:49-04:00" }, { "phage_name": "Zhangus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bruce Zhang", "found_city": "San Diego", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.873573 N", "found_GPS_long": "117.239818 W", "found_year": 2013, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": false, "discovery_notes": "Found in dry soil, mid 70s, air was not humid", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear plaques of 1mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhangus_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zhangus_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zhangus_Plaque_Thumb_6ackiAx.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zhangus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-11T16:31:55-05:00", "date_modified": "2020-09-17T14:05:19-04:00" }, { "phage_name": "Zhengyi", "old_names": "LZY1", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's a initial of my name, and that is the name that i use for the name mark during the whole experiment", "finder_name": "Zhengyi Lin", "found_city": "Tolland", "found_state": "CT", "found_country": "美国", "found_GPS_lat": "41.892222 N", "found_GPS_long": "72.311389 W", "found_year": 2019, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I get the soil under the apartment i live", "isolation_temperature": 20, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 410, "finishing_reactions": 0, "genome_length": 54803, "gcpercent": "58.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 52, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zhengyi_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zhengyi_Minimal_Final_FNOzNWZ.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zhengyi_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zhengyi_CoverSheet.pdf", "submitted_annotation_date": "2020-07-06T10:41:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zhengyi_flat_K4RFhqp.txt", "qced_genbank_file_date": "2020-07-06T10:41:46-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT771344", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhengyi_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zhengyi_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zhengyi.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Yihan_Plaque_Thumb_RyefstX.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zhengyi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-08T22:50:55-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zhenq", "old_names": "", "program": { "short_name": "KBRIN", "program_name": "Kentucky Biomedical Infrastructure Network Small Genomes Discovery Program", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Tina Zhen", "found_city": "Fairfax", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.828633 N", "found_GPS_long": "77.306903 W", "found_year": 2018, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 70, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-06T12:18:25-05:00", "date_modified": "2021-01-04T13:51:13-05:00" }, { "phage_name": "ZheroDRT", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Richard Lee Williams Jr. ", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "45.95 N", "found_GPS_long": "51.51 W", "found_year": 2013, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZheroDRT_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZheroDRT_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZheroDRT_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-03T09:35:19-05:00", "date_modified": "2020-09-17T14:05:50-04:00" }, { "phage_name": "Zhiru", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after my younger sister with whom I have a love and hate relationship.", "finder_name": "Aileen Mengru Zhou", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.331311 N", "found_GPS_long": "76.619678 E", "found_year": 2018, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected outside of the Fresh Food Cafe on the Johns Hopkins University Homewood Campus. The soil conditions were moist but slightly clumpy. ", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques appear as small circles of about 3mm with a dim ring. The center is clear while the ring is somewhat turbid. The ring is about 0.5mm. Plaques also usually appear spaced out. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhiru_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-05-01T10:57:07-04:00", "date_modified": "2020-09-17T14:10:19-04:00" }, { "phage_name": "Zhong", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zhong is my childhood nickname which was derived from the Chinese food \"zong zi\". It doesn't have any meaning and in fact isn't even a real Chinese name.", "finder_name": "Vivek Venkataraman", "found_city": "St. Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.642129 N", "found_GPS_long": "90.295923 W", "found_year": 2024, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "The soil for this phage was collected under a tree in Forest Park in St. Louis. It had rained the morning it was collected.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small-medium sized plaques. After round 3 of purification, average plaque size was 2.25 mm with a standard deviation of 0.62 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zhong_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zhong_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zhong_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zhong_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-10-29T10:15:50-04:00", "date_modified": "2024-12-06T13:16:08-05:00" }, { "phage_name": "Zhongli", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the former geo archon from the game Genshin Impact.", "finder_name": "Sreehitha Anugu", "found_city": "Webster Groves", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.626472 N", "found_GPS_long": "90.523618 W", "found_year": 2022, "p_institution": { "institution_code": "WBST", "institution_name": "Webster University", "institution_logo": "https://phagesdb.org/media/institutions/WebsterU.jpg", "institution_url": "http://www.webster.edu/", "institution_city": "Webster Groves", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.589104", "institution_longitude": "-90.34342" }, "enriched_sample": null, "discovery_notes": "Sample was taken from a planted bed in my backyard. It is watered regularly and baby okra plants have sprouted in the area recently.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque was from my second direct isolation. It was very small, like a pinprick, but clear and the edge was well defined.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-07-28T14:11:31-04:00", "date_modified": "2025-07-11T12:34:14-04:00" }, { "phage_name": "ZhongYanYuan", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Li-An Tsai", "found_city": "Taipei", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "25.042257 N", "found_GPS_long": "121.611925 E", "found_year": 2021, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-04-04", "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 690, "finishing_reactions": 0, "genome_length": 76092, "gcpercent": "59.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 128, "num_tRNAs": 13, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZhongYanYuan_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/ZhongYanYuan_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/ZhongYanYuan_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZhongYanYuan.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZhongYanYuan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZhongYanYuan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-03-31T07:26:54-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zhuangyuan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of my phage comes from my cat, Zhuangyuan, symbolizing the highest honor in the imperial examinations of ancient China. I hope this phage will provide valuable insights as we explore its potential to combat antibiotic-resistant bacteria, contributing to advancements in medicine.", "finder_name": "Yilin Chen", "found_city": "LOS ANGELES", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.053691 N", "found_GPS_long": "118.242766 W", "found_year": 2024, "p_institution": { "institution_code": "USOC", "institution_name": "University of Southern California", "institution_logo": "https://phagesdb.org/media/institutions/usc.png", "institution_url": "https://www.usc.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The phage sample was extracted from the soil on the pathway near the right side of the Leavey Library at the USC Park Campus", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AS", "temperate": true }, "psubcluster": { "subcluster": "AS2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "Based on the webbed plate that the lysate was collected from, the phage is pretty lytic.", "seq_finished": true, "date_finished": "2025-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 5980, "finishing_reactions": 0, "genome_length": 40260, "gcpercent": "65.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "GAGTTGCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 77, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zhuangyuan.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T14:57:08-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Ziamkumwuah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "In my language (Gio ) Ziamkuwuah mean God can not fail on people that are patient and determine. I name my phage Ziamkuwuah because I fail so many time,made so many mistake and it took me a lot of time to successfully discovery that phages.", "finder_name": "Aletha Nuahn", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "37.5 N", "found_GPS_long": "77.0 W", "found_year": 2018, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-06T11:46:34-05:00", "date_modified": "2020-09-17T14:10:29-04:00" }, { "phage_name": "Ziana", "old_names": "Melon", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zion Glen", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.79213 N", "found_GPS_long": "86.15013 W", "found_year": 2024, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "8/27/24\r\n86 degrees\r\n3:54 Pm \r\nMake up: Melon rinds, corn husks, avocado, peppers, eggshells, and banana peels.\r\nNo rain (Underneath a tarp)\r\n\r\nDirect plating", "isolation_temperature": 34, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "", "plaque_notes": "The plaques itself come in varying sizes ranging from:\r\n\r\nSmallest can be 1cm \r\n\r\nLargest can be 3cm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ziana_Plaque_ejewD1J.jpeg", "em_file": null, "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Ziana_VirtualDigest.jpeg", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T09:16:36-04:00", "date_modified": "2025-04-04T11:37:23-04:00" }, { "phage_name": "ZiausyteAM", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the last name of the researcher researching this phage, and the first initials of the last names of her two high school biology teachers.", "finder_name": "Ugne Ziausyte", "found_city": "Stockholm", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": null, "discovery_notes": "Found in the ground around the Ziausys Family tool shed.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Forms clear circular plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZiausyteAM_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/ZiausyteAM_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZiausyteAM_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZiausyteAM_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-20T14:09:04-04:00", "date_modified": "2020-09-17T14:07:05-04:00" }, { "phage_name": "ZibC", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a character from Invader Zim plus the section of general biology the student was in.", "finder_name": "Griffin McNulty and Jason Maroun", "found_city": "Tewksbury", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "46.6106 N", "found_GPS_long": "71.2342 W", "found_year": 2022, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "Sampling was done on 9/16/2022. The sample was collected from a dried up lake bed of conservation land in Tewksbury. Gloves were worn during the collection and 2 separate samples \r\nwere collected. 1 sample collected was of mud from the dried part of the lake bed and enough was taken to fill up a full sterile container. The second sample was taken from the water and was \r\naround the same amount of material collected. Both samples were then placed in the freezer for the next week. Then left in the fridge to thaw till 9/27/2022. when the isolation process was started. The liquid sample had been frozen for too long to be used so it was discarded.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were turbid and circular. They were about 0.2 cm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZibC_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-17T14:09:07-05:00", "date_modified": "2024-02-25T15:27:51-05:00" }, { "phage_name": "Zico", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage is inspired by the artist of the song I was listening to while collecting the soil sample.", "finder_name": "Reshani Jeyaratnam", "found_city": "Orleans", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.50214 N", "found_GPS_long": "75.49634 W", "found_year": 2022, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was collected at depth of 4cm under moist and muddy soil at Petrie Island Park.", "isolation_temperature": 17, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Medium sized plaques with a bullseye", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zico_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zico_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zico_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zico1.jpg", "dnam_file": null, "date_added": "2022-10-12T09:06:44-04:00", "date_modified": "2024-02-25T15:27:57-05:00" }, { "phage_name": "Zidee", "old_names": "Phlame", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Zidee\" is significant because we were determined to isolate our phage and achieve a high enough titer. \"Zidee\" in Hindi means determined and therefore, we named our phage after our determination. ", "finder_name": "Isabella Mancini,Simran Shamith,MekhalaSantebennur", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.958562 N", "found_GPS_long": "75.190212 W", "found_year": 2018, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found on Race Street Lawn directly underneath a small tree and was near grass. The soil was dug 3 cm before extraction. ", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Zidee's plaques were approximately 0.4 cm in diameter and were usually quite small. The plaques were clear, demonstrating that our phage was lytic. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zidee_Plaque_hj8Dixy.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zidee_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-30T16:11:08-05:00", "date_modified": "2020-09-17T14:10:04-04:00" }, { "phage_name": "Ziegler", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A reference to Dr. Angela Ziegler, a fictional scientist from Overwatch", "finder_name": "Lorelei Hughes", "found_city": "Redlands", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.030778 N", "found_GPS_long": "117.153954 W", "found_year": 2017, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear medium morphology (lysogenic)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-03-14T13:25:11-04:00", "date_modified": "2020-09-17T14:07:53-04:00" }, { "phage_name": "Zieke", "old_names": "Maximus", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kathryn Rooney and Emily Chi", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "39.016667 N", "found_GPS_long": "91.1 W", "found_year": 2013, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zieke_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zieke_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zieke_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zieke_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-05T09:59:01-05:00", "date_modified": "2015-04-29T14:33:30-04:00" }, { "phage_name": "Zigan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined both of our names to created a blended name.", "finder_name": "Zihan Gao and Morgan Carrithers", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "This phage came from an environmental soil sample in front of the Purdue Horticulture building. The sample actually had 2 phages in it, but we selected the tinier plaque and isolated that phage.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "This phage created very small plaques, so we had to dilute to 10^-8 to begin counting. The plaques formed are cloudy, with the outside edges being opaque instead of clearly defined. The overall plates look turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zigan_Plaque_k57VfK0.jpg", "em_file": "https://phagesdb.org/media/emPics/Zigan_EMPic_tXDUfdr.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zigan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zigan_EM_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T20:52:53-05:00", "date_modified": "2020-09-17T14:08:46-04:00" }, { "phage_name": "Zigg", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jake Surges", "found_city": "Gilberts", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "42.098 N", "found_GPS_long": "88.359 W", "found_year": 2011, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Soil type: compact dirt, under grass\r\nDepth: 12.7 cm\r\nTemperature: 13° C\r\nEnvironment: side of house, next to sidewalk in grass", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K2" }, "morphotype": "SIPHO", "plaque_notes": "Size: 0.5 cm\r\nMorphology: lytic\r\nVariation: plaques became smaller as isolation and purification proceeded", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zigg_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zigg_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zigg_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zigg_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zigg_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-12-05T17:02:51-05:00", "date_modified": "2017-09-22T12:31:45-04:00" }, { "phage_name": "Ziggy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maggie Reingold and Victoria Bjordahl", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667046 N", "found_GPS_long": "117.402804 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "From the flowerbeds on Herak lawn at Gonzaga University", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3mm in diameter\r\nclear\r\nround ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-06-23T09:44:54-04:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "Ziggy4", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after my dog who was attacked and killed by another dog during the process of phage isolation. ", "finder_name": "Elizabeth Chiang", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.3278 N", "found_GPS_long": "76.6219 W", "found_year": 2018, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "The soil sample was taken from a small grassy area surrounded by a brick wall and concrete pavement. The location was chosen because it is right next to a series of dumpsters outside of a cafeteria. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques in the bacteria formed by the phages are small and tend to cluster together. The plaques vary in size but range from 1-4 mm. They are circular with faded margins. The EM revealed a phage with a large circular head and a tail measuring 70-85 nanometers long. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ziggy4_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ziggy4_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T10:06:46-04:00", "date_modified": "2020-09-17T14:10:19-04:00" }, { "phage_name": "ZiggyStardust", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We have named our phage ZiggyStardust as a tribute to the the late David Bowie, in honor of his classic album \"The Rise and Fall of Ziggy Stardust and the Spiders from Mars\".", "finder_name": "Trevor McCliment & Charles Thompson", "found_city": "Olympia", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.043861 N", "found_GPS_long": "122.867843 W", "found_year": 2016, "p_institution": { "institution_code": "EVER", "institution_name": "The Evergreen State College", "institution_logo": "https://phagesdb.org/media/institutions/Evergreen-Tree-Logo.png", "institution_url": "http://www.evergreen.edu/", "institution_city": "Olympia", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.072073", "institution_longitude": "-122.9766" }, "enriched_sample": true, "discovery_notes": "Our phage was isolated from a sample of garden soil.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are round with sharp edges, and approximately 1mm wide", "lysogeny_notes": "The clarity of our plaques and plaque edges seems to indicate that our phage is l", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZiggyStardust_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZiggyStardust_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZiggyStardust_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T12:06:41-05:00", "date_modified": "2020-07-09T18:17:53-04:00" }, { "phage_name": "ZiggyZoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nickname for Cassandra's old dog", "finder_name": "Liz Timple and Cassandra Paterson", "found_city": "Monroeville", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4295 N", "found_GPS_long": "79.7851 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil sample was very moist due to rainfall the night before collection. The humidity at the time of collection was 87% and it was 22 degrees celsius outside.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CV", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, circular plaques ranging in size; edges look turbid when plaques overlap/webbed", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-28", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1856, "finishing_reactions": 0, "genome_length": 50992, "gcpercent": "67.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCTCCGGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 80, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZiggyZoo_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZiggyZoo_Minimal_Final_4cdlf6l.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/ZiggyZoo_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/ZiggyZoo_CoverSheet.pdf", "submitted_annotation_date": "2021-02-12T12:41:06-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/ZiggyZoo.gbf", "qced_genbank_file_date": "2021-02-12T12:41:06-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MW601225", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZiggyZoo_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZiggyZoo_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZiggyZoo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZiggyZoo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-11T18:13:04-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zighnesh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name of both founders of phage.", "finder_name": "Vighnesh Sivaprakasam and Zaid Qureshi", "found_city": "Catonsville", "found_state": "MD", "found_country": "United States of America", "found_GPS_lat": "39.30086 N", "found_GPS_long": "76.75165 W", "found_year": 2023, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "The sample was light in color but moist due to recent rainfall.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "These phages had an average capsid diameter of 68.5 nm (SD = 6.1 nm, n = 3), an average tail length of 251.4 nm (SD = 12.1 nm, n = 3), as well as an average tail width of 11.5 nm (SD = 1.9 nm, n = 3)", "lysogeny_notes": "lytic viral cycle", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zighnesh_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/S2G6_01.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zighnesh_Digest_OnUymzc.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/S2G6_01-thumb.png", "dnam_file": null, "date_added": "2023-10-09T15:11:55-04:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "Zigmund", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My dog's name is Ziggy. My family often jokes that his legal name is Zigmund and I thought this would be a funny way to pay homage to my favorite pet, as I don't see him much while I am away at school.", "finder_name": "Emily A Farley", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.606956 N", "found_GPS_long": "75.377682 W", "found_year": 2024, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "This soil was collected from the lawn of Lehigh University's campus by a classmate. The soil was moist and damp.", "isolation_temperature": 8, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "0.5-1mm diameter, bullseye appearance", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zigmund_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zigmund_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zigmund_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zigmund_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zigmund_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-03-18T07:29:24-04:00", "date_modified": "2025-09-02T12:02:58-04:00" }, { "phage_name": "Ziguan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kyle Moffitt and Connor Tovey", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-07T22:49:38-05:00", "date_modified": "2020-09-17T14:08:59-04:00" }, { "phage_name": "Zigzag", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zoie Chow", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-07T09:29:38-05:00", "date_modified": "2017-09-24T10:14:26-04:00" }, { "phage_name": "Zigzags", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because we go to Gonzaga and our nickname for our school is Zags. ", "finder_name": "Megan Gatmaitan and Tiana Duvall", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66 N", "found_GPS_long": "117.4 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found our sample near the sewage drain. It was located at the bottom of the Hughes Hall stairs. Moist dirt. 37 degrees outside temperature. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaques are hazy, and small circles about 2 millimeters wide. ", "lysogeny_notes": "310 nm tail \r\n80 nm capsid", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zigzags_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zigzags_Digest_1.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zigzags_EMPic_Thumb.png", "dnam_file": null, "date_added": "2014-03-20T10:56:00-04:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Ziha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the founder's first name, Ziha.", "finder_name": "Ziha Meghoo-Peddie", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.74745 N", "found_GPS_long": "84.41642 W", "found_year": 2015, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Collected from soil next to some shrubs on a warm and dry day. Using cluster specific PCR primers, placed this phage in Cluster A3. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear and round plaques. Well spread out and very visible.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ziha_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Ziha_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ziha_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-01T10:19:30-05:00", "date_modified": "2020-09-17T14:06:25-04:00" }, { "phage_name": "Zijin20", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Naming after the person who discovered this PHAGE.", "finder_name": "Zijin He", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "US", "found_GPS_lat": "40.261363 N", "found_GPS_long": "79.574871 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The PHAGE sample (soil sample) was collected at night. The location was West side of Caroll university memorial. The soil near there have some pine near the soil sample place.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Sample head is about90nm and tail is about 200nm, phage morphology is Siphoviridae.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zijin20_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zijin20_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zijin20_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zijin20_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-04T19:54:52-05:00", "date_modified": "2020-09-17T14:12:03-04:00" }, { "phage_name": "Zikai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is my friends first name, ZIkai Zheng. I chose his name because his name is unique so I knew it wouldn't have been used yet. ", "finder_name": "Chloe Mattiko", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445907 N", "found_GPS_long": "79.953925 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Found outside Clapp Hall. It was found after it had just previously rained so the soil was damp. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are of medium size about 2-3 millimeters. The plaques are asymmetrical, more oval than circular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zikai_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zikai_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-11T20:27:12-04:00", "date_modified": "2020-09-17T14:10:36-04:00" }, { "phage_name": "Ziko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I have two dogs named Niko and Ziggy. For my phage name, I combined my dogs' names to make Ziko.", "finder_name": "Anna Bondonese", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443 N", "found_GPS_long": "79.953 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Ziko was found on 9/9/18 at 5:32 pm. The soil sample was taken from a planter in Schenley Park, Pittsburgh. The outside weather was 59 degrees Fahrenheit with winds blowing at 9 mph northeast. The soil was wet because it had been raining. Nearby vegetation included a few bushes. The soil was stored in a temperature controlled drawer until brought to lab.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DP", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "This phage produces clear plaques that are almost circular, with some variation, measuring about 1-2 mm in diameter.", "lysogeny_notes": "Lysogen testing was performed and clear plaques were produced. Therefore, it can be concluded that Ziko is a lytic phage.", "seq_finished": true, "date_finished": "2019-01-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 469, "finishing_reactions": 0, "genome_length": 68860, "gcpercent": "50.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "ACTCTGCCCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 149, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Ziko_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-05-09T19:14:22-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Ziko_flat.txt", "qced_genbank_file_date": "2019-05-09T19:14:22-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK919478", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ziko_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Ziko_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Ziko_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Ziko.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ziko_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Ziko_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-08T16:20:22-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zilerak", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kareliz Ramos", "found_city": "Bayamon", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.395947 N", "found_GPS_long": "66.1707 W", "found_year": 2012, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "9/16/2012\r\nWet soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-09T10:24:07-04:00", "date_modified": "2017-09-12T10:27:29-04:00" }, { "phage_name": "Zilizebeth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for the phage is a mash-up of the second and third letter of my first name (Zi-Nzinga), with lizebeth being a modified spelling of my middle name (which is Elizabeth).", "finder_name": "Nzinga Hendricks", "found_city": "Bethlehem", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.6259 N", "found_GPS_long": "75.3705 W", "found_year": 2017, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The soil sample that my phage was extracted from was soil found from behind Drinker House, located on 64 Quad Drive on Lehigh University's campus. The soil was collected January 23rd, 2017, and that particular day it was raining so the soil was damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology of Zilizebeth is the following:\r\n\r\nThe plaque clearings are very clear (no traces of turbid clearings or rings). This indicates that Zilizbeth follows a lytic cycle. The phage clearings are mixed between small phage clearings (ranging between 0.5-1.0 mm) and large clearings (ranging between 1.5-2.5 mm). The plaques form after 24 hours.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-10-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 672, "finishing_reactions": 0, "genome_length": 48056, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "CCCGCCCCCCGA", "sequencing_notes": "This sample was part of LEHIGH 2017 DOGEMS. Phage was PCR verified.\r\nAt position 20346 bp 25% of reads contain an A instead of consensus G.\r\nAt position 28321 bp 42% of reads contain a C instead of consensus A.\r\n", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 83, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zilizebeth_Minimal_Final_trBThXq.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-02-12T14:12:48-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zilizebeth_flat.txt", "qced_genbank_file_date": "2019-02-12T14:12:48-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK524508", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zilizebeth_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zilizebeth_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zilizebeth_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zilizebeth.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zilizebeth_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zilizebeth_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-04-03T12:31:26-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zilla", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alexandra Crowshaw", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.443885 N", "found_GPS_long": "79.951983 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Lab Group Members: Alexandra Crowshaw, Marissa Bordone, Daniel Mera\r\n\r\nDiscovery Notes: Sample found from a lot of green grass under the log cabin by The Cathedral of Learning. The soil was a light brown with lots of debris, but there was no trouble filtering the sample. Also, it was collected on a hot and sunny day, so the soil was dry.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CV", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are highly distributed amongst G. rubi bacterial host", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-08-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3759, "finishing_reactions": 0, "genome_length": 48080, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCTCCGGTGA", "sequencing_notes": "In position 27790 approx. 40% of reads contain a G to A substitution.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 77, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zilla_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zilla.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-01T09:43:08-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zillamir", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zion Thomas and Amir Faulkner", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.748 N", "found_GPS_long": "84.415 W", "found_year": 2023, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": false, "discovery_notes": "Found on North Face of the building in soil. Grass near area.", "isolation_temperature": 31, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The name came from a combination of its discoverers. We think it is cluster L of subcluster L2 from pcr analysis.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T15:42:51-05:00", "date_modified": "2023-11-28T15:42:51-05:00" }, { "phage_name": "Zilre", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after a dungeons and dragon character, a dark elf rogue. The plagues for my phage were small, like the character.", "finder_name": "Rachel Bowling", "found_city": "Bowling Green", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "41.3755 N", "found_GPS_long": "83.6419 W", "found_year": 2018, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "Found in wet soil with organic matter. The sample was taken 3 cm from the surface. The ambient temperature was 32.8 degrees Celsius ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plagues are temperate and small in size, roughly 1 mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-08T15:52:37-04:00", "date_modified": "2020-09-17T14:10:02-04:00" }, { "phage_name": "Zimbra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Woodfield", "found_city": "Auckland", "found_state": "", "found_country": "New Zealand", "found_GPS_lat": "36.782405 S", "found_GPS_long": "174.636949 E", "found_year": 2021, "p_institution": { "institution_code": "MASY", "institution_name": "Massey University", "institution_logo": "https://phagesdb.org/media/institutions/masseyUniversityLogo.png", "institution_url": "http://www.massey.ac.nz/", "institution_city": "Auckland Campus", "institution_state": "", "institution_country": "New Zealand", "institution_latitude": "-40.387504", "institution_longitude": "175.6165" }, "enriched_sample": true, "discovery_notes": "retrieved from compost garden", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zimbra_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zimbra_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zimbra_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zimbra_EMPic-1-small.jpg", "dnam_file": null, "date_added": "2021-05-28T12:29:22-04:00", "date_modified": "2021-10-15T14:03:23-04:00" }, { "phage_name": "Zime", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This bacteriophage is named Zime, after a cartoon alien invader who invades earth. We suspect the phage is temperate, just like invader zim (the cartoon) is not a violent invader of earth.", "finder_name": "Melany Garcia and Claire Kirk and Merna Kamal", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.5375 N", "found_GPS_long": "72.983333 E", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "The temperature outside was 51 degrees Fahrenheit. It was a cloudy day. The soil was moist and acidic as a shrub grew out of it.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques vary in size from small, medium to large. The size of the plaques are all circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zime_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zime_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-31T21:13:00-04:00", "date_modified": "2020-07-08T12:42:44-04:00" }, { "phage_name": "Zimmer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A tribute to the great Carl Zimmer", "finder_name": "Dillon Cardinale and Parker Shaffer", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667314 N", "found_GPS_long": "117.402271 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Isolated at 22ºC (room temp)", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A12" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-07-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 89, "finishing_reactions": 0, "genome_length": 53048, "gcpercent": "63.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGACGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 90, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zimmer_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-01-01T16:36:42-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zimmer_flat.txt", "qced_genbank_file_date": "2022-01-01T16:36:42-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OM203158", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zimmer.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-13T14:46:32-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zimmy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Micah Zimmerman", "found_city": "Bismarck", "found_state": "ND", "found_country": "USA", "found_GPS_lat": "46.8081 N", "found_GPS_long": "100.79553 W", "found_year": 2017, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-03-19T11:51:44-04:00", "date_modified": "2020-09-17T14:09:34-04:00" }, { "phage_name": "Zing", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "HH and JB", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.43334 N", "found_GPS_long": "117.107769 E", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-07T23:53:58-05:00", "date_modified": "2020-09-17T14:08:59-04:00" }, { "phage_name": "Zinga", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage name was inspired by my pet cat's name.", "finder_name": "Zahria Shipp", "found_city": "Cullowhee", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "35.31 N", "found_GPS_long": "83.187222 W", "found_year": 2022, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": true, "discovery_notes": "The soil I retrieved my sample from, was located in Cullowhee creek, underneath the bridge.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zinga_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zinga_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-07T08:19:38-05:00", "date_modified": "2024-02-25T15:27:54-05:00" }, { "phage_name": "Zinger", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Fun, unique name. Zinger also means an outstanding thing, which when you think about what phages do and how many there are, its pretty outstanding. ", "finder_name": "Emma Gerrity and Cregyn DeMarce", "found_city": "Moorhead", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "46.876 N", "found_GPS_long": "96.756 W", "found_year": 2018, "p_institution": { "institution_code": "MSUM", "institution_name": "Minnesota State University Moorhead", "institution_logo": "https://phagesdb.org/media/institutions/MSUM.png", "institution_url": "https://www.mnstate.edu/", "institution_city": "Moorhead", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in dry, packed soil near a patch of grass. The soil was collected on the surface and the ambient temperature was 65 degrees Fahrenheit on a cloudy day. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "-Many small plaques\r\n-Low turbidity \r\n-Defined edges \r\n-More like “blobs” - not perfect circles \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-28T12:36:56-05:00", "date_modified": "2018-11-28T12:36:56-05:00" }, { "phage_name": "ZingerCyan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose this name because the soil sample was taken from outside of Muenzinger auditorium in Boulder", "finder_name": "Lauren Halterman and Jacob Rouse", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00897 N", "found_GPS_long": "105.26983 W", "found_year": 2023, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "This sample was collected at 9:50am on January 24th 2023. The soil was close to a wall and under mulch.", "isolation_temperature": -1, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "This phage is a lytic siphoviridae likely belonging in F1 cluster. The plaque sizes range from 2-5mm averaging 4.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-03T09:04:50-04:00", "date_modified": "2024-02-25T15:28:26-05:00" }, { "phage_name": "Zinkmetal", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "David Zink", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "33.987 N", "found_GPS_long": "43.967 W", "found_year": 2018, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": null, "discovery_notes": "Townhouses by the landscaping area", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zinkmetal_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zinkmetal_EMPic_JG4AfOZ.jpg", "dnam_file": null, "date_added": "2018-11-08T22:10:19-05:00", "date_modified": "2020-09-17T14:11:45-04:00" }, { "phage_name": "Zinnia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the flower - Zinnia", "finder_name": "Madison Laudie", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.589357 N", "found_GPS_long": "90.569477 W", "found_year": 2018, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "Soil sample is from a vegetable garden.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zinnia_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zinnia_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-04-23T20:26:33-04:00", "date_modified": "2020-09-17T14:09:43-04:00" }, { "phage_name": "Zinzli", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zinzli is a tribute to \"gato zinzli,\" the Mauritian sesame ball delicacy. Her morphology well-represents that of a sesame ball impressioned by voracious fingertips, but beyond that, the Mauritian origin of the treat is shared by my supervisor. Sesame balls were at the core of Zinzli's discovery process, and I wanted her name to serve as a meaningful memento of our time together.", "finder_name": "Andrew Dayton", "found_city": "Montréal", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.50372 N", "found_GPS_long": "73.57752 W", "found_year": 2023, "p_institution": { "institution_code": "MCGL", "institution_name": "McGill University", "institution_logo": "https://phagesdb.org/media/institutions/mcgill2.jpg", "institution_url": "https://www.mcgill.ca/", "institution_city": "Montreal", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I found Zinzli in a scared and untrusting state amid a grassy smear of mud which I can only assume was the remnants of a construction project. She resisted collection, clinging to her last grip on the natural world with respectable vigour. \r\n\r\nFor my part, I was skeptical as I shoveled her into my tube – my final sample likely going to waste. Yet still, part of me remained intrigued: what lies within this peculiar green-tinted Earth matter so foreign to the rest of my subjects?\r\n\r\nTo my surprise, the answer was Zinzli: a well-behaved yet murderous little monster. We didn't know it then, but we would be spending quite some time with one another, and forced proximity is my favourite form of bonding.\r\n\r\nFor weeks our relationship was commensal; I provided bacteria for her to kill, she killed it well. But as time elapsed and her number grew, curiously, so did my appreciation. I began feeling joy coming into the lab each day and seeing her work, applauding her efforts and marvelling at her virulence. I began to delight in the myriad surprises to which she gifted me. The more I learned, the more I loved. I like to think, by the end, our relationship was one of symbiosis. \r\n\r\nThis is how I discovered Zinzli, a beautiful bacteria-killing virus, but more than that: a friend I will cherish forever.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Depending on her mood, Zinzli is known to exhibit two signature slaughtering techniques:\r\n\r\nIf left to her own devices with few others around, she is unafraid to be authentically feral and will entirely pulverize her victims. The evidence? Large, wide plaques with fuzzy-edged remains. Harrowing, indeed.\r\n\r\nIf Zinzli feels crowded, however, she becomes timid and overwhelmed, resorting to quietly killing her victims with a sharp stab in the night. Come daylight, this can be observed by the presence of small, sharp-edged plaques among a lawn of survivors. \r\n\r\nZinzli is a versatile assassin.", "lysogeny_notes": "Zinzli is suspected to have dabbled in the art of lysogeny, yet this appears to be a secret of which she has not yet revealed. Perhaps with time, she will confide in me this information.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zinzli_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zinzli_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/QSNxd7eY.jpg", "dnam_file": null, "date_added": "2023-12-01T15:48:45-05:00", "date_modified": "2024-02-25T15:28:32-05:00" }, { "phage_name": "Zion", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ashlyn Murrell", "found_city": "Birmingham", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "33.502000 N", "found_GPS_long": "86.806389 W", "found_year": 2016, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EN", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1123, "finishing_reactions": 0, "genome_length": 66392, "gcpercent": "52.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCTACGGTGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 4, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zion_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zion_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zion_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zion_CoverSheet.docx", "submitted_annotation_date": "2017-05-02T13:26:16-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zion_zYM46XZ.gbf", "qced_genbank_file_date": "2017-10-18T13:43:58-04:00", "isolation_host": { "genus": "Corynebacterium", "species": "vitaeruminis", "strain_name": "NCIB 9291", "strain_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10234", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG198780", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zion.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zion_NzG8EnH.dnam5", "date_added": "2016-11-10T08:39:15-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zions", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sion Kim", "found_city": "Orangeburg", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.0 N", "found_GPS_long": "74.0 W", "found_year": 2019, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zions_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zions_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T22:48:15-05:00", "date_modified": "2021-01-28T11:04:03-05:00" }, { "phage_name": "Zionvosgi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Skylar Driscoll", "found_city": "Philadelphia ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.956574 N", "found_GPS_long": "75.189748 W", "found_year": 2017, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-04T19:28:41-05:00", "date_modified": "2020-09-17T14:08:50-04:00" }, { "phage_name": "Zipp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Daniel Zipfel", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442422 N", "found_GPS_long": "79.958188 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 967, "finishing_reactions": 0, "genome_length": 61219, "gcpercent": "67.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zipp_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-05-14T15:51:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zipp_flat.txt", "qced_genbank_file_date": "2019-05-14T15:51:38-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK937607", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zipp_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zipp_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zipp_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zipp.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zipp_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zipp_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-09-27T13:07:08-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zippen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Zipper(1)(2). The producers of The Yard podcast.", "finder_name": "Ammi Paul", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.360149 N", "found_GPS_long": "75.65879 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Raised concrete plant bed at Greenboro Bus Station.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AU", "temperate": false }, "psubcluster": { "subcluster": "AU7" }, "morphotype": "SIPHO", "plaque_notes": "Medium clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2463, "finishing_reactions": 0, "genome_length": 58117, "gcpercent": "51.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zippen_CompleteNotes_0FEhdL6.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zippen_Minimal_Final_w8Kl3H5.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zippen_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zippen_CoverSheet.docx", "submitted_annotation_date": "2025-06-17T14:25:59-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zippen_flat.txt", "qced_genbank_file_date": "2025-06-17T14:25:59-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-4225", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915823", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zippen_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zippen_EMPic_CVLzORe.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zippen_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zippen.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/phagesDB_zippen_plaquemorphology_thumbnail_200x200px.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/E-10_Zippen_1.jpg", "dnam_file": null, "date_added": "2024-10-14T14:55:38-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zipper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jayson Thatcher and Eric Jestel", "found_city": "Orono", "found_state": "ME", "found_country": "United States", "found_GPS_lat": "44.89746 N", "found_GPS_long": "68.66814 W", "found_year": 2022, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from the root system of a dead elm tree", "isolation_temperature": 24, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were mostly clear and between .5 and 2 millimeters.", "lysogeny_notes": "Zipper had an efficiency of lysogeny of 97% and was moderately stable: phage particles were released into the culture supernatant at a concentration of 3*10^5 viral particles per μL.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zipper_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Zipper_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zipper_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-19T07:56:41-04:00", "date_modified": "2024-02-25T15:28:07-05:00" }, { "phage_name": "Zippy", "old_names": "Zippy0625", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My cat's name and my birth month and day.", "finder_name": "Manuel Montes de Oca", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "Used very top soil. Red clay, georgia soil. Soil was dry under tree.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2mm, phage had halo, lysogenic.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zippy0625_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zippy0625_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-07T09:00:42-05:00", "date_modified": "2020-06-18T11:27:54-04:00" }, { "phage_name": "Zips", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my last name", "finder_name": "Keisha Whitaker", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.8 N", "found_GPS_long": "79.8 E", "found_year": 2019, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "Taken from top soil at the car wash", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-02T23:51:34-04:00", "date_modified": "2019-04-16T15:09:12-04:00" }, { "phage_name": "Zirasi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We took two letters from our first names.", "finder_name": "Rachel Ziskind, Siobhan Dietz, Zihan Diao", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.19 N", "found_GPS_long": "72.38 W", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "The sample was found outside of Bass hall on a cloudy moderately humid day, the person who collected the soil dug 2-3 inches into the soil to collect the sample.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Circular tiny dots.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zirasi_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zirasi_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-31T21:13:40-04:00", "date_modified": "2020-07-08T12:43:31-04:00" }, { "phage_name": "Zirinka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Ukrainian word for star", "finder_name": "Aleks Brown", "found_city": "Ligonier, PA", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.242006 N", "found_GPS_long": "79.234299 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CZ", "temperate": true }, "psubcluster": { "subcluster": "CZ1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-02-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2884, "finishing_reactions": 0, "genome_length": 52077, "gcpercent": "66.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCTGGGGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 79, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX557287", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zirinka.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zirinka_gb.dnam5", "date_added": "2015-10-08T13:38:29-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Ziroca", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is made of the initials of the discovering group.", "finder_name": "Zena Covert, Ijeoma Ajibola, Ruth Okewole", "found_city": "McKinney", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.209952 N", "found_GPS_long": "96.716905 W", "found_year": 2017, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "From a flowerbed with old mulch, somewhat dry and clumpy soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were circular with clear centers and the edges of the plaques are slightly cloudy. All plaques range from 1-2mm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-09T20:32:42-04:00", "date_modified": "2020-09-17T14:09:09-04:00" }, { "phage_name": "Zitch", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zachary Spires and Mitchell Foster", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.007822 N", "found_GPS_long": "83.018556 W", "found_year": 2019, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-12-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1657, "finishing_reactions": 0, "genome_length": 58928, "gcpercent": "67.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zitch_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-05-16T22:01:26-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zitch_flat.txt", "qced_genbank_file_date": "2020-05-16T22:01:26-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT498036", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zitch.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-25T15:30:41-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Ziva", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kendyl Pyfer", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.973222 N", "found_GPS_long": "75.195444 W", "found_year": 2012, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Ziva was taken from the Philadelphia Zoo at the Okapi exhibit.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are 0.5 mm and turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ziva_Plaque.tiff", "em_file": "https://phagesdb.org/media/emPics/Ziva_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Ziva_Digest.tiff", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ziva_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Ziva_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-12-07T15:33:25-05:00", "date_modified": "2017-09-12T10:27:28-04:00" }, { "phage_name": "Ziynet", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Turkish name; means \"ornament' since the capsid represents the ornament and the tail represents the string from which the ornament hangs on ", "finder_name": "Ceyda Durmaz", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.282925 N", "found_GPS_long": "76.664688 W", "found_year": 2014, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "Phage went through 4 rounds of purification. Mean tail length was 198.84 nm with a standard deviation of 9.11, and the mean capsid diameter 70.19 nm with a standard deviation 1.97. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Round plaques of varying sizes on good lawn. Some plaques overlap one another. If plaques cluster and overlap each other, often do so in numbers around four or five. No infection present. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-18T21:24:58-05:00", "date_modified": "2020-09-17T14:05:45-04:00" }, { "phage_name": "Zizzle", "old_names": "Sizzle", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after Elouise and Frankie's favorite stuffed animal name.", "finder_name": "Deborah Jacobs-Sera and Kira Zack", "found_city": "North Huntingdon", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.326389 N", "found_GPS_long": "79.677898 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This phage was found in the same location as Rosebush, Echild, and CrystalP.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-29", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1395, "finishing_reactions": 0, "genome_length": 59381, "gcpercent": "61.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGACGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 108, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zizzle_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-05-14T12:35:17-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zizzle_flat.txt", "qced_genbank_file_date": "2021-05-14T12:35:17-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ274306", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zizzle_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zizzle_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zizzle.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zizzle_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zizzle_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2021-01-29T08:38:57-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zlatan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T22:53:54-05:00", "date_modified": "2020-09-17T14:12:03-04:00" }, { "phage_name": "Zlatica", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zlatica was chosen through a random name generator.", "finder_name": "Maya Twamley/JessLamoureaux/TaylorGrenon/AnisaZoto", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.391258 N", "found_GPS_long": "72.523749 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found near the Life Sciences Lab at UMass Amherst off of a path, in a grassy dirt area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque was about 4 mm wide, clear with smooth edges, and had a bullseye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zlatica_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/zlatica_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-07T08:05:38-04:00", "date_modified": "2024-09-16T14:22:36-04:00" }, { "phage_name": "Zobea", "old_names": "Zobeawankenobi", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined our names.", "finder_name": "Beatriz Wygant and Zoe Miller", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6669 N", "found_GPS_long": "117.403333 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage was discovered underneath a tree", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zobea_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Zobeawankanobe_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zobea_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zobeawankanobe_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-04-25T15:44:33-04:00", "date_modified": "2020-09-17T14:11:55-04:00" }, { "phage_name": "Zoboomafoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zoboomafoo is named in remembrance of the late lovable lemur that is part of everyone's heart. ", "finder_name": "Meili Aiello and Maria Schlegel", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.51 N", "found_GPS_long": "84.7 E", "found_year": 2018, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": null, "discovery_notes": "Our phage was isolated in a muddy moss mixture by a creek located in the North Lawn of Miami University.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1. Icosahedra head\r\n2. ~0.25 micrometers long\r\n3. Long flexible tail\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-05T11:40:24-05:00", "date_modified": "2020-09-17T14:09:36-04:00" }, { "phage_name": "Zoboomaphoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage had really long tails with a rounded end, which reminded me of a long tail so I named my phage after the beloved lemur Zoboomaphoo. MY phage also had gradations on its tail, just like a lemur. ", "finder_name": "Stefanie Hernandez", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.331389 N", "found_GPS_long": "76.62 W", "found_year": 2014, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Found in a garden patch next to sunflowers", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Round phages \r\nrpughly 2mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoboomaphoo_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zoboomaphoo_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoboomaphoo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoboomaphoo_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-24T16:24:03-05:00", "date_modified": "2020-09-17T14:06:01-04:00" }, { "phage_name": "Zodiac", "old_names": "Mortecai", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Mortecai (Mort-eh-ki)", "finder_name": "Katelyn Maliszewski", "found_city": "Ames", "found_state": "IA", "found_country": "USA", "found_GPS_lat": "41.07 N", "found_GPS_long": "90.6 W", "found_year": 2017, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": null, "discovery_notes": "I collected the phage on August 25th, 2017. The sample was collected from a flower bed on Iowa State Campus. At the time of collection, it was 70 F and the sample depth was about 3 cm below the surface. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The plaque morphology was very small and clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Mortecai_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Mortecai_Digest.tiff", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zodiac_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-09T19:51:29-05:00", "date_modified": "2020-09-17T14:09:33-04:00" }, { "phage_name": "Zodiariah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my emotional support kitten Zodiac Zachariah Hampton.", "finder_name": "Charliste Hampton", "found_city": "Atlanta", "found_state": "GA", "found_country": "Fulton", "found_GPS_lat": "33.778027 N", "found_GPS_long": "84.412136 W", "found_year": 2024, "p_institution": { "institution_code": "SPEL", "institution_name": "Spelman College", "institution_logo": "https://phagesdb.org/media/institutions/Spelman.gif", "institution_url": "http://www.spelman.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.745254", "institution_longitude": "-84.41397" }, "enriched_sample": null, "discovery_notes": "The soil was dry and found near an area with frequent dog walks.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DW", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are visible and clear.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 558, "finishing_reactions": 0, "genome_length": 51070, "gcpercent": "65.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "TGCCAGCGGTA", "sequencing_notes": "This sample was sequenced as part of a DOGEMS (deliberately mixed) sample.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 70, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zodiariah_CompleteNotes_usdxkVO.txt", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zodiariah_Minimal_Final_OKKgRo0.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zodiariah_Authors_1J92DGK.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zodiariah_CoverSheet_1hD7nOJ.docx", "submitted_annotation_date": "2025-06-25T12:23:15-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zodiariah_flat.txt", "qced_genbank_file_date": "2025-06-25T12:23:15-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV876950", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zodiariah_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zodiariah_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zodiariah.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T12:17:32-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZoeJ", "old_names": "ZoeGene2012, ZoeGene", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named after my newborn niece Zoe Jean.", "finder_name": "Seth Pinches", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.8441 N", "found_GPS_long": "71.438 W", "found_year": 2012, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "Dense Compact soil. Soil Contained rocks and had a small amount of leaf coverage. The soil was found under a tree with small red berries. The soil itself was deep, interrupted with roots and within 10 meters of grass.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K2" }, "morphotype": "SIPHO", "plaque_notes": "The plaques were clear and oval and were approximately 4 mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-01-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 640, "finishing_reactions": 0, "genome_length": 57315, "gcpercent": "68.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCGCGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KJ510412", "refseq_accession": "NC_024147", "plaque_file": "https://phagesdb.org/media/plaquePics/ZoeGene_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/ZoeGene_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZoeJ.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZoeGene_Plaque_Thumb_aUHDQD4.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZoeGene_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-11-29T09:22:51-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zoella", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Juliana Gallegos and Zaria Winkle", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.664444 N", "found_GPS_long": "117.405 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "0.7mm\r\nClear\r\nRound\r\n\r\nTiter: 3.99x10^9", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoella_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zoella_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zoella_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoella_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoella_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-11-03T15:28:13-04:00", "date_modified": "2020-09-17T14:07:41-04:00" }, { "phage_name": "ZoeSoni", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the family's pet German spitz dog, Zoe.", "finder_name": "Nandini Soni", "found_city": "Ames", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "42.029394 N", "found_GPS_long": "93.646617 W", "found_year": 2023, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": false, "discovery_notes": "Found phage from the grass around one of the trees in front of Science Hall I at Iowa State University.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZoeSoni_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/ZoeSoni_EMPic_KisUsVZ.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZoeSoni_EMPic_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-24T08:27:41-04:00", "date_modified": "2025-09-12T10:29:22-04:00" }, { "phage_name": "Zoex20", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lorena Pintar", "found_city": "Frostburg", "found_state": "MD", "found_country": "", "found_GPS_lat": "39.650597 N", "found_GPS_long": "78.933919 W", "found_year": 2021, "p_institution": { "institution_code": "FRST", "institution_name": "Frostburg State University", "institution_logo": "https://phagesdb.org/media/institutions/fsulogored.jpg", "institution_url": "https://www.frostburg.edu/", "institution_city": "Frostburg", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil samples was collected next to the PE cord center(on the side where tennis courts are)", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-08T12:24:09-05:00", "date_modified": "2022-03-16T11:02:11-04:00" }, { "phage_name": "Zoey", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zoey is the name of my first dog. ", "finder_name": "Paige Conrad", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.5945 N", "found_GPS_long": "75.141 W", "found_year": 2018, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Phage was found on September 2, 2018 under a tree on the East side of Mandeville Hall at Saint Joseph's University. The weather was cloudy but very hot with a 63% humidity. The soil where the phage was extracted was dry although rain two days prior to collection occurred. Phage was extracted after digging 4 cm deep for collection. ", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Small clear plaques about 1.5 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoey_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Zoey_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Zoey_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoey_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoey_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-09T00:00:44-05:00", "date_modified": "2020-09-17T14:10:15-04:00" }, { "phage_name": "Zoey17", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hailey Chaplin", "found_city": "Maumee", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "I found it on the bank of the Maumee River or near the Maumee River", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-25T12:54:09-05:00", "date_modified": "2020-09-17T14:11:47-04:00" }, { "phage_name": "ZoGG", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ana O'Donnell Zamora & Lindsey Groff", "found_city": "Pullman", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Found in muddy soil outside a greenhouse near plants.", "isolation_temperature": 41, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-01T09:34:38-04:00", "date_modified": "2023-05-01T09:34:38-04:00" }, { "phage_name": "Zoidberg", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it 'Zoidberg' after the character from the TV show, Futurama.", "finder_name": "Joshua A. McNeil", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.743943 N", "found_GPS_long": "84.416858 W", "found_year": 2016, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Found this sample after it rained. I dug about an inch or two below the surface and collected it. Not sure what the cluster is but I believe it to be in cluster L2 phage based on cluster specific PCR primer analysis.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoidberg_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoidberg_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-16T22:17:17-05:00", "date_modified": "2020-09-17T14:07:34-04:00" }, { "phage_name": "Zoinks", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Zoinks\" is an expression of shock and surprise derived from popular culture. This phage was found next to a rotting banana, a development worthy of shock and surprise.", "finder_name": "Nicole Araujo", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.2225 N", "found_GPS_long": "80.422778 W", "found_year": 2019, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Found on Virginia Tech campus, pathway leading from Cochrane hall to West Campus Drive, between Harper Hall and New Hall West. Used top layer of heterogenous soil, which had some small rocks and no grass.\r\n\r\nThere were many residential student buildings nearby, and the area gets high morning and afternoon foot traffic. It was next to a bench and old banana. There is a dining hall close by. A laundry air vent blows out over soil. There were 2 trees nearby, and the soil was not sloped.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate.\r\nPlaques are small, pinprick-sized and inconsistently shaped at 37 degrees Celsius. Both larger plaques with haloes and pinprick-sized plaques without haloes are visible when incubated at 32 degrees Celsius. Halo rings are typically wide.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoinks_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zoinks_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Zoinks_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoinks_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoinks_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2019-11-11T15:57:27-05:00", "date_modified": "2020-09-17T14:11:15-04:00" }, { "phage_name": "Zola", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from the Internet. Zola means little ball of earth.", "finder_name": "Ethan Gibeaut and Leandra Lugo", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.7621 N", "found_GPS_long": "97.39547 W", "found_year": 2012, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "It was found next to a water hoses that was damp. It was a shady area with lots of trees and plants around it. Weather was about 97 degree fahrenheit.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque Morphology suggest that the bacteriaphage reproduces through the lytic life cycle because plaques are clear and fast growing.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-05T13:15:31-05:00", "date_modified": "2017-09-12T10:27:23-04:00" }, { "phage_name": "Zoldyck", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "'Zoldyck' is from the manga and anime series Hunter x Hunter. In the series, the Zoldycks are a family of assassins known for their exceptional skills and abilities.", "finder_name": "Khazel Laigo, Joshua Butler", "found_city": "Owing Mills", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.425778 N", "found_GPS_long": "76.778333 W", "found_year": 2024, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "It's from a soil sample collected at Stevenson University's Owings Mills campus, specifically in front of the Garrison Student Union building, right below the building sign. It is a loamy, moist soil taken from a depth of 2 inches, with an ambient temperature of 22°C.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques exhibit a turbid appearance with a halo margin.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoldyck_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zoldyck_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoldyck_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoldyck_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-10-11T11:40:01-04:00", "date_modified": "2025-04-04T11:37:32-04:00" }, { "phage_name": "Zolita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Zola\" was the original name for my phage and I got the inspiration for its name from Grey's Anatomy, however, Zola was taken. I opted for Zolita instead.", "finder_name": "Samantha Otalvaro", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.843056 N", "found_GPS_long": "71.438611 W", "found_year": 2018, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "The soil collected was discovered and retrieved next to a sprinkler. The soil was wet, clumpy, and slightly runny. It was a sunny day with slight clouds. It was warm and 83°F.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A5" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1523, "finishing_reactions": 0, "genome_length": 51182, "gcpercent": "60.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGAGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 85, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zolita_CompleteNotes_dQEkUud.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zolita_Minimal_Final_H771o7p.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zolita_Authors_aNJUHDW.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zolita_CoverSheet_5c7LVv6.pdf", "submitted_annotation_date": "2019-06-18T15:15:09-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zolita_flat.txt", "qced_genbank_file_date": "2019-06-18T15:15:09-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN096372", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zolita_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zolita_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zolita.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zolita_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-07T20:54:00-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zollars18", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Tai Zollars", "found_city": "Lincoln ", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.833438 N", "found_GPS_long": "96.633561 W", "found_year": 2013, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "Discovered near the Nebraska Wesleyan parking lot near a fire hydrant ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B3" }, "morphotype": "", "plaque_notes": "Very round head with a long and segmented tail. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zollars18_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zollars18_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zollars18_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zollars18_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-11T16:24:10-05:00", "date_modified": "2020-09-17T14:05:32-04:00" }, { "phage_name": "ZoMa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name is a combination of the scientist's inititals.", "finder_name": "Mary Barnett & Zoe McAdams", "found_city": "Roanoke", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.410829 N", "found_GPS_long": "79.629913 W", "found_year": 2023, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": true, "discovery_notes": "Soil sample taken from Sheep Creek Rd in Bedford County Va, 24523.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 756, "finishing_reactions": 0, "genome_length": 41901, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZoMa_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZoMa_Minimal_Final_tRBr2qp.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/ZoMa_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/ZoMa_CoverSheet.pdf", "submitted_annotation_date": "2024-09-01T20:44:33-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/ZoMa_flat.txt", "qced_genbank_file_date": "2024-09-01T20:44:33-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ362673", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZoMa.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-26T11:36:11-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zoman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after my cat, Zo man. We chose this name because it was creative and original, just like our phage. ", "finder_name": "Danielle Zalutko and Mollie Simonson", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666944 N", "found_GPS_long": "177.400278 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "My partner and I collected our soil sample under a tree. The soil was not dry, but it was also not wet. We collected one gram of our enriched soil sample. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaques were turbid. Our phage was 4 mm in length. It was fairly circular, and was small/medium in size. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoman_Plaque.tiff", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zoman_Plaque_Thumb.png", "dnam_file": null, "date_added": "2016-11-30T23:42:43-05:00", "date_modified": "2020-09-17T14:07:41-04:00" }, { "phage_name": "Zombeaver", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "named after the 2014 hit movie of the year", "finder_name": "Rio Lemkuil", "found_city": "", "found_state": "IN", "found_country": "", "found_GPS_lat": "40.4271 N", "found_GPS_long": "86.90658 W", "found_year": 2022, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "Temperature was 22 degrees celsius, 0\" rainfall in 24 hours prior to discovery. Humidity 78%\r\n\r\nPrimarily worked on by Natasha Macarchuk and Emma Newton", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-21T10:11:34-05:00", "date_modified": "2024-02-25T15:28:00-05:00" }, { "phage_name": "Zombie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Monica Towler", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.981 N", "found_GPS_long": "84.006 W", "found_year": 2012, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "Plaque is clear and approximately 1.5mm in diameter. ", "lysogeny_notes": "I thought I had multiple phages to begin with because there were multiple different sizes. As it turns out, my phage is Lytic and I kept examining it during a Lytic bursting cycle which made it appear to be many different phages of different size plaques.", "seq_finished": true, "date_finished": "2013-02-07", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 510, "finishing_reactions": 0, "genome_length": 41901, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zombie_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zombie_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zombie_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zombie_CoverSheet.doc", "submitted_annotation_date": "2015-07-17T08:24:58-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zombie_flat_5phrLik.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KX664455", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zombie_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zombie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zombie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zombie_Plaque_Thumb_THpBXlh.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zombie_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Zombie_pFfbinX.dnam5", "date_added": "2012-10-29T11:19:30-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zonia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Abigail Brown", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.627222 N", "found_GPS_long": "90.197778 W", "found_year": 2013, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "Date: 9/2/13\r\nTemperature: 82F\r\nLocation:The phage was found 3 cm deep in a garden containing a mixture of clay and soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques had to separate diameters of 2 cm and 5 cm. They are both clear and circular.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-01-22", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4994, "finishing_reactions": 0, "genome_length": 69271, "gcpercent": "66.3", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zonia_Final_2.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zonia_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zonia_CoverSheet.docx", "submitted_annotation_date": "2014-05-12T17:43:47-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KM363597", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zonia_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zonia_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zonia.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zonia_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-11-12T15:56:23-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZooBear", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my dog because I am very close to my dog", "finder_name": "Alexander Cabrera", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.19747 N", "found_GPS_long": "97.132884 W", "found_year": 2017, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Soil was collected on 2-8-2017 at about 12:48pm. The temperature outside was 14.4°C. The soil was dark, slightly moist, and slightly clumpy, and was collected in a grassy area near bushes and a flower bed, away from major walking areas.", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "BF", "temperate": false }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "The plaques that I used had an average diameter of 1.33mm, were a clear circular shape, and these plaques were the larger plaques that were found on my enrichment plate.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-02", "seq_facility": { "short_name": "UNT", "facility_name": "University of North Texas", "contact_person": "Richard Hale/Lee Hughes", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 178, "finishing_reactions": 0, "genome_length": 46135, "gcpercent": "59.7", "end_type": "TREP", "repeat_length": 274, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 64, "num_tRNAs": 22, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZooBear_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2017-11-30T16:10:50-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/ZooBear_flat.txt", "qced_genbank_file_date": "2017-11-30T16:10:51-05:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG663586", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZooBear_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZooBear_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZooBear.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZooBear_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-05T23:03:07-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZooDirt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "“Zoomass” is one of the many nicknames for UMass Amherst since it’s to describe the popular party culture here at the university. Since one of the first things we did for bio153 was to collect dirt, we decided to combine the two names together to make ZooDirt - a tribute to our university’s culture and to our lab’s first activity.", "finder_name": "TylerP, RoccoNO, SophiaW, TaliaG", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.3911 N", "found_GPS_long": "72.52033 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found under a larger bush in moist soil. The weather that day was fairly warm with little to no wind and since the bush hosted a lot of other organisms, that might've explained why we were able to find the phage there. By the time we brought the soil sample into the lab, it was still fresh and less than 12 hours old.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Circular, round edges, a little cloudy, size of plaques were on the smaller side at about 1.2 to 1.3 mm. There was no bullseye or halo on our plaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zoodirt_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/zoodirt_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-04-01T12:37:39-04:00", "date_modified": "2025-04-04T11:37:40-04:00" }, { "phage_name": "Zook", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sara Christian", "found_city": "Lewisburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.964529 N", "found_GPS_long": "76.88441 E", "found_year": 2015, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": null, "discovery_notes": "Did an enrichment culture", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AN", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear plagues", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-19T16:12:21-05:00", "date_modified": "2020-09-17T14:06:29-04:00" }, { "phage_name": "Zoolander", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Vishal Bhula and Jacob Pascual", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.971933 N", "found_GPS_long": "118.417572 W", "found_year": 2011, "p_institution": { "institution_code": "LOMA", "institution_name": "Loyola Marymount University", "institution_logo": "https://phagesdb.org/media/institutions/Loyola_Marymount.jpg", "institution_url": "http://www.lmu.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.970679", "institution_longitude": "-118.4174" }, "enriched_sample": true, "discovery_notes": "Plant soil, 1 1/2 inches deep, 73ºF or 22.77ºC", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were clear and most had a diameter of 1mm. Very few had plaques that were the size of roughly 1.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoolander_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zoolander_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Zoolander_Digest.tiff", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoolander_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zoolander_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-10T06:27:31-05:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zooman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I choose the name \"Zooman\" because being in a lab setting reminded me of my favorite childhood movie \"Zoom: Academy for Superheros\" and I included \"man\" at the end because I wanted to humanize my bacteriophage more because after spending so much time with it over these past few months, I felt as though I had made a connection with it.", "finder_name": "Emily Haviland", "found_city": "Storrs", "found_state": "CT", "found_country": "United States", "found_GPS_lat": "41.819 N", "found_GPS_long": "72.25 W", "found_year": 2020, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "I chose soil from The University of Connecticut, Storrs, and the soil I found was taken from the ground near a horse pen.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "GD", "temperate": null }, "psubcluster": { "subcluster": "GD2" }, "morphotype": "SIPHO", "plaque_notes": "My plaque is clear and small!", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 70, "finishing_reactions": 0, "genome_length": 192730, "gcpercent": "58.4", "end_type": "TREP", "repeat_length": 17077, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 311, "num_tRNAs": 42, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zooman_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zooman_Minimal_Final_wGOdgxE.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zooman_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zooman_CoverSheet.pdf", "submitted_annotation_date": "2021-08-29T10:11:21-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zooman_tGDDtvi.gbf", "qced_genbank_file_date": "2021-08-29T10:11:21-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OK040793", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zooman_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zooman_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zooman.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zooman_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zooman_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-11-19T14:55:51-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zoomass", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "L. Kirkorian, R.Johns, X.Su, S.Challa", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.390273 N", "found_GPS_long": "72.522657 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found on UMass Amherst Campus in Amherst, MA.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1-2mm bullseye shaped plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/zoomass_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/zoomass_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-06T08:23:05-04:00", "date_modified": "2024-09-16T14:22:33-04:00" }, { "phage_name": "Zoomcall", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Due to COVID-19, our entire research group met via Zoom call meetings throughout the semester; thus, the name Zoomcall was born.", "finder_name": "Z Buck, A Chalamgari, N Danielsen, C Lintz", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.434 N", "found_GPS_long": "79.958 E", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Dark in color soil; lots of root fibers and small rocks in the area; some beetles in the bag with the soil sample; moist soil because of recent rainfall", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, 1mm diameter clearings with no hazy spots; there was one mesa found (which leads to the hypothesis that our phage probably spends a short period of time in the lysogenic cycle)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoomcall_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoomcall_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-13T12:15:50-05:00", "date_modified": "2021-01-28T11:04:35-05:00" }, { "phage_name": "Zoomies", "old_names": "Catnip", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage Catnip for my cat.", "finder_name": "Hala Mallah", "found_city": "Burbank", "found_state": "IL", "found_country": "United States of America", "found_GPS_lat": "41.738889 N", "found_GPS_long": "87.791667 W", "found_year": 2024, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil was collected from a garden and it was moist. It was collected on a hot and sunny day.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage is 0.5 mm in diameter. The phage was lytic and it had a clear edge and center. The PFU/mL = 3x10^9.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Catnip_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-08T09:03:33-05:00", "date_modified": "2025-07-11T12:49:14-04:00" }, { "phage_name": "ZoomZoomZoom", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zoie Chow", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-07T09:29:07-05:00", "date_modified": "2017-09-24T10:14:49-04:00" }, { "phage_name": "Zooshi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of Jaclyn Gagnon's cat plus the back half of sushi.", "finder_name": "Jaclyn Gagnon", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.388439 N", "found_GPS_long": "72.526571 W", "found_year": 2021, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This sample was found by the UMass Campus pond. The sample itself was a watery/muddy slur, not a dry soil sample. This pond is a favorite of Canadian geese before they migrate, and feces, urine, and other \"geese bodily contaminants\" contaminate both the grass around the pond as well as the direct water itself. This sample was collected on 9/14/21.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaques measure around 1.5mm, are cloudy, have slightly \"fuzzy\" but rounded edges (not clean cut). Our phage produces a clear \"bullseye\" in the middle of the plaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zooshi_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zooshi_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-20T15:10:04-04:00", "date_modified": "2024-09-16T14:09:49-04:00" }, { "phage_name": "Zoosk", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We thought it was a fun name.", "finder_name": "Kaitlin Friedli & Nikki Barish", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667013 N", "found_GPS_long": "117.403194 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage came from soil just outside of Hughes Hall near a storm grate. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This plaque was roughly 3 millimeters in size. It was also a lytic phage because the plaque created was clear on the inside and as you move toward the edge, it becomes slightly cloudy. The concentration of this plaque was 64.05 nano grams/ microliter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zoosk_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zoosk_EMPic_Thumb.png", "dnam_file": null, "date_added": "2014-11-03T10:09:00-05:00", "date_modified": "2020-09-17T14:06:13-04:00" }, { "phage_name": "Zooweemomama", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Zooweemomama\": Combination of the phrase \"Zooweemama\" from Diary of a Wimpy Kid, and the word \"emo\".", "finder_name": "Amanda Way, Vanessa Tillotson", "found_city": "Orono", "found_state": "ME", "found_country": "United States", "found_GPS_lat": "44.9304 N", "found_GPS_long": "68.70177 W", "found_year": 2024, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "Dirt sample collected from a compost pile on Roger's Farm in Old Town, Maine.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Many 2mm and 1mm plaques present on the plates, both complete clearings. Determined through streak assays that this phage has two morphological sizes.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Zooweemomama_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-07T11:18:22-04:00", "date_modified": "2025-04-04T11:37:26-04:00" }, { "phage_name": "Zora", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Elizabeth Lupercio", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667222 N", "found_GPS_long": "117.402778 E", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zora_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zora_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-01T16:34:24-05:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "Zorbinski", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zorbari Nwidor", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-01-21T14:35:00-05:00", "date_modified": "2015-04-29T14:33:30-04:00" }, { "phage_name": "Zori", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "the phage's name is Zori and this was inspired my niece.", "finder_name": "Naniel Scott", "found_city": "Windsor", "found_state": "CT", "found_country": "United States", "found_GPS_lat": "41.825996 N", "found_GPS_long": "72.659067 W", "found_year": 2019, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected on a warm day in August from dark soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "It has a halo around it and it doesn't consume the entire plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zori_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zori_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zori_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zori_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-29T21:42:03-04:00", "date_modified": "2020-09-17T14:11:37-04:00" }, { "phage_name": "Zorka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We used a random name generator in order to find a unique name.", "finder_name": "Stephanie Coxen, Mikelle Boice", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667 N", "found_GPS_long": "117.402 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We were unable to use our own collected samples due to a lack of variable evidence of the presence of a viral phage.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Fairly small, round plaques. Our titer of our lysate came to be 10^7.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zorka_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zorka_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zorka_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zorka_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zorka_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-08T22:28:20-05:00", "date_modified": "2020-12-15T18:31:24-05:00" }, { "phage_name": "Zorloft", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after my boyfriend’s really cute dog.", "finder_name": "Bianca Ramon", "found_city": "Flower Mound", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.0098 N", "found_GPS_long": "97.07604 W", "found_year": 2022, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "I collected my soil sample near a sewage pipe in my neighborhood park. I used soil from 1 - 2 inches below the surface of the ground. It had sprinkled half an hour before I collected it, so the humidity was high, and it was cloudy. The temperature was 83°F.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The diameter of my plaques was around 0.5mm - 1mm. Most of them were closer to 1mm than 0.5mm. They were clear and circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "bicolor", "strain_name": "NRRL B-3897", "strain_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zorloft_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zorloft_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zorloft_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-20T08:25:52-04:00", "date_modified": "2025-09-11T09:14:17-04:00" }, { "phage_name": "Zorro", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zachary Kozick", "found_city": "Lewisburg ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.957018 N", "found_GPS_long": "76.877916 W", "found_year": 2015, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1377, "finishing_reactions": 0, "genome_length": 43562, "gcpercent": "61.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GGTAACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zorro_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zorro_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zorro_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zorro_CoverSheet.pdf", "submitted_annotation_date": "2018-11-19T13:22:36-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zorro.gbf", "qced_genbank_file_date": "2018-11-19T13:22:36-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK279896", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zorro.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Zorro.dnam5", "date_added": "2015-11-17T16:16:38-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zorvex", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "we found it futuristic.", "finder_name": "TM, LB, JS, LSH", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.395555 N", "found_GPS_long": "72.525356 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear, presence of bullseye", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-28T13:36:34-04:00", "date_modified": "2025-03-31T10:59:33-04:00" }, { "phage_name": "ZoSo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Leo Cooper", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/ZoSo_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/ZoSo_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/ZoSo_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-12-16T09:34:57-05:00", "date_modified": "2020-09-17T14:05:28-04:00" }, { "phage_name": "Zoya", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Diwa Ahmadzai", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.99 N", "found_GPS_long": "86.45 W", "found_year": 2021, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 80, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoya_Plaque_aofdQoa.JPG", "em_file": "https://phagesdb.org/media/emPics/Zoya_EMPic_E5pYiBu.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zoya_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-09-30T10:58:34-04:00", "date_modified": "2022-03-16T11:02:06-04:00" }, { "phage_name": "ZoyaHT", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after best friend", "finder_name": "Tanisha Sahay", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.505833 N", "found_GPS_long": "81.603889 W", "found_year": 2024, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small cloudy plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-10T14:52:06-05:00", "date_modified": "2025-04-04T11:37:44-04:00" }, { "phage_name": "Zoziegirl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sky Peters", "found_city": "Missoula", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "46.907494 N", "found_GPS_long": "113.971855 W", "found_year": 2010, "p_institution": { "institution_code": "UMON", "institution_name": "University of Montana", "institution_logo": "https://phagesdb.org/media/institutions/Montana.jpg", "institution_url": "http://www.umt.edu/", "institution_city": "Missoula", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.860291", "institution_longitude": "-113.9852" }, "enriched_sample": true, "discovery_notes": "1\" deep, moist soil under a rotting pine log. 73°F", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "0.5-1mm diameter at 48 hours, quite lytic.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zoziegirl_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zoziegirl_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-12-01T03:07:49-05:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zozo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage name is Zozo and it is the name of my favorite character from my favorite TV show and it holds a lot of importance to me because Zozo always has a good attitude and never brings any trouble and I feel my phage also hasn't given me trouble!", "finder_name": "Radia Ahmed", "found_city": "Fort Worth", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "32.884524 N", "found_GPS_long": "97.267419 W", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The temperature was extremely high as it was 99 degrees F. The location I got my soil from is by a region of soil near my own garden I dug up about 1 inch of soil. Based on the high heat, it was also extremely humid.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaque was a clear rounded shape and measured to be .2 cm!", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zozo_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-21T09:36:39-04:00", "date_modified": "2022-03-16T11:02:36-04:00" }, { "phage_name": "ZozoZoestar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zi Hall, October Myers", "found_city": "Harper's Ferry", "found_state": "WV", "found_country": "United States", "found_GPS_lat": "39.3254 N", "found_GPS_long": "77.7389 W", "found_year": 2022, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Collected on 9/3/22 in 85F, clear day with plenty of sun, dry-ish dirt sample taken from forested area. \r\n\r\nAverage Head length:61 nm\t\r\nAverage Head width: 56 nm\t\r\nAverage noncontracted tail length: 274 nm", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~1 mm, clear, circular/round, present after about 16-24 hours of incubation on S. scabiei", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZozoZoestar_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/ZozoZoestar_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/ZozoZoestar_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZozoZoestar_Plaque-Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/S2_G7_Zozozoestar_Thumb.png", "dnam_file": null, "date_added": "2022-09-28T09:14:49-04:00", "date_modified": "2024-02-25T15:27:52-05:00" }, { "phage_name": "ZPickles", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My friend's nickname for me is \"pickles\". Combined with my name, I came up with ZPickles.", "finder_name": "Zahra Chasmawala", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.9499 N", "found_GPS_long": "86.468 W", "found_year": 2024, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "The temperature was 90° F when I collected my soil sample, from a vegetation-dense area along a trail in the Lost River Caves, Bowling Green, KY. The sample site was surrounded by greenery, including trees and ground cover, indicative of the cave's humid and rich environment.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques' morphology primarily consisted of turbid plaques. The average plaque diameter was 0.4 cm. These plaques are round with clear edges, lacking any halos.\r\n\r\n48-hour incubation periods in 30°C conditions.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZPickles_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/ZPickles_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/ZPickles_Digest_bC4M2AM.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/67463123bcb7c_download.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/674630ccb823f_download.jpg", "dnam_file": null, "date_added": "2024-11-25T11:17:41-05:00", "date_modified": "2024-11-27T07:17:45-05:00" }, { "phage_name": "Zrenja", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for the city of Zrenjanin, Serbia", "finder_name": "Benjamin Bishop", "found_city": "Aubrey", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.2384 N", "found_GPS_long": "96.9734 W", "found_year": 2023, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Soil was collected at a dog park in Aubrey, Texas, on January 22 2023 at 9pm. The temperature was 5C and the humidity was 61%. The soil was dry and coarse.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Circular, clear, and 1-2 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "baarnensis", "strain_name": "NRRL B-2842", "strain_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zrenja_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-02T08:36:14-04:00", "date_modified": "2024-02-25T15:28:20-05:00" }, { "phage_name": "ZRoss", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My last name.", "finder_name": "Zachary Rosson", "found_city": "Watertown", "found_state": "SD", "found_country": "USA", "found_GPS_lat": "44.856199 N", "found_GPS_long": "97.055852 W", "found_year": 2018, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "Sample was taken next to a pond. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small circular plaques, no halo, slightly cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T10:10:24-04:00", "date_modified": "2020-09-17T14:09:34-04:00" }, { "phage_name": "Zsegetron", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is named after my high school chemistry teacher Mrs. Szegedi's nickname.", "finder_name": "Allison Darnell", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.787103 N", "found_GPS_long": "86.102207 W", "found_year": 2015, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "Still in the process of \"discovering\". From my current data, it is most similar to the K1 phages.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Usually produces plaques around 3-4mm in diameter. Slightly turbid plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": "2020-05-13", "seq_facility": { "short_name": "HOPE", "facility_name": "Hope College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zsegetron_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zsegetron_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Zsegetron_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zsegetron_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zsegetron_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-06T11:11:20-05:00", "date_modified": "2020-09-17T14:06:19-04:00" }, { "phage_name": "ZSLorenzo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The Z comes from the Spanish word for trash can (zafacon). SLorenzo refers to San Lorenzo, the town where I found it. ", "finder_name": "Jose G. Palacios-Vallejo", "found_city": "San Lorenzo", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.178611 N", "found_GPS_long": "65.971944 W", "found_year": 2015, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "Found under a trash can. The soil was dry. Temperature was 93 F. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear plaques but with a halo at the edges. Approx. 3 cm diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-06T11:27:01-05:00", "date_modified": "2015-11-09T09:51:09-05:00" }, { "phage_name": "Zucchaurescens", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the zucchini plant.", "finder_name": "Adam Rudner", "found_city": "Ottawa, ON", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.333383 N", "found_GPS_long": "75.836466 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in moist organic soil from under a row cover adjacent to a yellow zucchini plant. Direct isolation plate was webbed. With dilution the phage formed small plaques and appeared pure. Klug and Zucharescens were isolated from the same soil sample on related hosts, but the RE digest suggests that these are distinct phages", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "aurescens", "strain_name": "NRRL B-2879", "strain_species": { "id": 99, "genus": "Arthrobacter", "species_name": "aurescens", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 99, "genus": "Arthrobacter", "species_name": "aurescens", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zucchaurescens_Plaque.pdf", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zucchaurescens_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-04T10:59:07-05:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Zucchini", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Zucchini plant", "finder_name": "Emily Tautz and Emily Hite", "found_city": "Centennial", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "39.59 N", "found_GPS_long": "104.95 W", "found_year": 2017, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Phage was found in a garden next to a zucchini plant.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lysogenic with turbid rings.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zucchini_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zucchini_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zucchini_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zucchini_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zucchini_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-16T17:14:00-05:00", "date_modified": "2020-09-17T14:08:53-04:00" }, { "phage_name": "ZucchiniBaby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the baby size/weighted zucchinis my garden grows since I found the phage in my garden and it was a B1 phage which means it is large like the zucchinis.", "finder_name": "Adira D Altman", "found_city": "Providence", "found_state": "RI", "found_country": "United States", "found_GPS_lat": "41.503444 N", "found_GPS_long": "71.241623 W", "found_year": 2021, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": false, "discovery_notes": "Found at Brown St. Community Garden. \r\n\r\nSoil was fairly dry and sandy although there were bits of organic material within it from the surrounding garden fauna\r\n\r\nSoil was taken from 0-2.5cm under the surface. \r\n\r\nAir temperature was about 25* Celsius", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were initially lytic and a couple millimeters in diameter. However, after purification 4 they were more temperate and looked like bullseyes.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZucchiniBaby_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-03T13:56:57-05:00", "date_modified": "2021-12-03T13:56:57-05:00" }, { "phage_name": "ZucchiniBread", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named ZucchiniBread after the delicious food.", "finder_name": "Melia Scholl, Sophie Koch", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.009289 N", "found_GPS_long": "105.269197 W", "found_year": 2021, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Sample was taken from wet soil underneath a layer of mulch. Location was underneath a tree and kept moist by a sprinkler system.", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Plaques are small, clear, approximately 1.5 mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZucchiniBread_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/ZucchiniBread_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/ZucchiniBread_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-17T11:00:38-05:00", "date_modified": "2022-03-16T11:02:28-04:00" }, { "phage_name": "Zucker", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It was the name of my first dog.", "finder_name": "Samantha A. Marquette", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.852711 N", "found_GPS_long": "92.616269 W", "found_year": 2021, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": false, "discovery_notes": "The soil was dry, the temperature was around 52 degrees Fahrenheit, and there was 86% humidity. The soil sample was collected from 3 inches deep by Grimm Hall, next to a little flower bed. The ground around the area was pretty dry soil and mulch with grass and an Oak Tree nearby.", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "FN", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques range in sizes but do not get larger than 1mm and the plaques are turbid with no halos.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1697, "finishing_reactions": 0, "genome_length": 53491, "gcpercent": "62.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCCGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zucker_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-05-16T12:37:56-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zucker_flat.txt", "qced_genbank_file_date": "2022-05-16T12:37:56-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON645346", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zucker_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zucker_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zucker_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zucker.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zucker_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zucker_EMthumb.png", "dnam_file": null, "date_added": "2021-10-11T13:23:51-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "ZuessPup", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for the discoverer's dog.", "finder_name": "Semaj Moss", "found_city": "Emmitsburg", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.68 N", "found_GPS_long": "77.34 W", "found_year": 2022, "p_institution": { "institution_code": "MMYU", "institution_name": "Mount St. Mary’s University", "institution_logo": "https://phagesdb.org/media/institutions/msmu-logo.png", "institution_url": "https://msmary.edu/", "institution_city": "Emmitsburg", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "A water sample was collected in September on the Mount St. Mary's University campus in the Powell parking lot pond on the east rear side of the gate opening. The air temperature was 72°F.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "-diameter ~3mm\r\n-cloudy ring at outer edge", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-01-12T12:03:12-05:00", "date_modified": "2024-10-08T10:20:10-04:00" }, { "phage_name": "Zugarbox", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after the area in which it was found.", "finder_name": "Marisa Garcia", "found_city": "Socorro", "found_state": "NM", "found_country": "United States of America", "found_GPS_lat": "34.063574 N", "found_GPS_long": "106.897701 W", "found_year": 2021, "p_institution": { "institution_code": "NMIT", "institution_name": "New Mexico Institute of Mining and Technology", "institution_logo": "https://phagesdb.org/media/institutions/nmt_color.png", "institution_url": "https://www.nmt.edu/", "institution_city": "Socorro", "institution_state": "NM", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found in a garden box growing zucchini and pumpkins. The soil was moist and fertilized. The sample was dark brown in color.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid plaques in the shape of rigid circles. These plaques were larger than other plaques made by phages found in my class. Plaques were around 1 to 2mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-01T14:07:49-05:00", "date_modified": "2022-03-16T11:02:00-04:00" }, { "phage_name": "Zugasti", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is my last name and I would like to honor the uniqueness of my last name as well as my work through this phage.", "finder_name": "Michelle Zugasti", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.20757 N", "found_GPS_long": "97.151509 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": false, "discovery_notes": "Sample was collected around 1:40 pm the courtyard of Clark Hall in Denton, TX. Soil consistency was very wet and muddy. The soil collected was from approximately an inch deep from the topsoil.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaques were first measured to be approximately 0.5 mm in diameter. no visible halos but instead seeming formation of bullseye in each plaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UNT", "facility_name": "University of North Texas", "contact_person": "Richard Hale/Lee Hughes", "shipping_address": "", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zugasti_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zugasti_Plaque_Thumb_vs4WPg8.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-03-31T08:22:32-04:00", "date_modified": "2021-01-28T11:04:08-05:00" }, { "phage_name": "Zuko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jennifer Ferry and Michelle Hajdenberg", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.7725 N", "found_GPS_long": "90.5564 W", "found_year": 2018, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "Found outside St. Charles home, 1 cm deep, clay-like soil.", "isolation_temperature": 33, "growth_notes": "", "pcluster": { "cluster": "BR", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear plaques that are uniform in size and evenly distributed throughout the plate.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-02-07", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 152, "finishing_reactions": 0, "genome_length": 82302, "gcpercent": "63.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 115, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zuko_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-07-17T16:21:09-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/zuko_final2_flat.txt", "qced_genbank_file_date": "2019-07-17T16:21:09-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseofuscus", "strain_name": "ATCC 23916", "strain_species": { "id": 66, "genus": "Streptomyces", "species_name": "griseofuscus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "23916", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 66, "genus": "Streptomyces", "species_name": "griseofuscus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN204493", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zuko_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zuko_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zuko.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zuko_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zuko_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-10T16:24:50-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zukotopia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from some creative thoughts. ", "finder_name": "Lauren Rutherford and Blake McBroom", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667311 N", "found_GPS_long": "117.405151 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "22 degrees Celsius isolation temperature (room temperature) ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Relatively clear (limited cloudiness) and the size is very small (about 0.5 mm). ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zukotopia_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zukotopia_EMPic.pdf", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zukotopia_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Zukotopia_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-04-17T10:39:20-04:00", "date_modified": "2020-09-17T14:09:06-04:00" }, { "phage_name": "Zulu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eric Michael Lundin II", "found_city": "Reno", "found_state": "NV", "found_country": "USA", "found_GPS_lat": "39.172716 N", "found_GPS_long": "119.719321 W", "found_year": 2015, "p_institution": { "institution_code": "TMCC", "institution_name": "Truckee Meadows Community College", "institution_logo": "https://phagesdb.org/media/institutions/tmcc-logos-green.jpg", "institution_url": "http://www.tmcc.edu/", "institution_city": "Reno", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "39.572241", "institution_longitude": "-119.7969" }, "enriched_sample": null, "discovery_notes": "Phage was found underneath a decaying pile of leaves. The leaves lost most of their fall color and turned a mushy brown. The soil itself was moist. This phage was found in late January.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A6" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3368, "finishing_reactions": 0, "genome_length": 52499, "gcpercent": "61.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zulu_CompleteNotes_HeQEh7b.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Zulu_Minimal_Final_MkT60t2.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Zulu_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Zulu_CoverSheet_e4eEI88.pdf", "submitted_annotation_date": "2018-08-14T16:02:02-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Zulu_flat.txt", "qced_genbank_file_date": "2018-08-14T15:15:56-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH779517", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zulu_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zulu_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Zulu.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zulu_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zulu_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-18T09:24:25-05:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zumbra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named Zumbra to reflect the energy and mystery of its discovery. it has a mysterious tone but it also sounds friendly.", "finder_name": "Gallardo Y, Jones K, Sanchez A, Odler A, Lopez E.", "found_city": "Wingate", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "34.9875 N", "found_GPS_long": "80.443889 W", "found_year": 2025, "p_institution": { "institution_code": "WGTU", "institution_name": "Wingate University", "institution_logo": "https://phagesdb.org/media/institutions/wingate.png", "institution_url": "https://www.wingate.edu/", "institution_city": "Wingate", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected from a plot of grass near a tree and by the road. Soil was dry with grass.", "isolation_temperature": 17, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were approximately 1-3 mm in diameter, clear in appearance with smooth, well defined margins.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-05-01T12:51:44-04:00", "date_modified": "2025-05-01T12:51:44-04:00" }, { "phage_name": "Zuri", "old_names": "Adopt", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I like the name Zuri cause its cute and my phage is tiny and cute. ", "finder_name": "Timbree Pederson", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.7697 N", "found_GPS_long": "86.1664 W", "found_year": 2017, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "Discovered from enrichment isolation. \"Zuri\" can grow at 42 degrees Celsius. Also can infect Xeno lysogen. ", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Size of a small pen dot on paper, round, and slightly turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zuri_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Zuri_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zuri_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-24T16:55:28-04:00", "date_modified": "2020-09-17T14:08:12-04:00" }, { "phage_name": "ZuStrand", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We used the initials of our pet's name.", "finder_name": "Chowdhury, Khan, Matos, Paul", "found_city": "Paterson", "found_state": "NJ", "found_country": "United States of America", "found_GPS_lat": "40.9168 N", "found_GPS_long": "74.1718 W", "found_year": 2020, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "We got our soil from the backyard bush. It was collected from 12 inches below the surface.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaque was clear and was all small and the same size", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-23T10:57:33-05:00", "date_modified": "2021-05-25T13:14:24-04:00" }, { "phage_name": "Zuzu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katherine Yoo", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.73 N", "found_GPS_long": "117.165405 W", "found_year": 2011, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "The soil was collected on September 13th, 2011 at 66°F, was slightly damp, and dug up at surface level.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2mm long and cloudy/turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zuzu_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Zuzu_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zuzu_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zuzu_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-04T09:10:59-04:00", "date_modified": "2017-09-12T10:22:11-04:00" }, { "phage_name": "Zych31", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Molly Zych", "found_city": "Manhattan", "found_state": "KS", "found_country": "USA", "found_GPS_lat": "39.13 N", "found_GPS_long": "96.6 W", "found_year": 2015, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Konza prarie: unburned, nitrogen, unmowed", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "2mm clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zych31_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Zych31_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Zych31_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Zych31_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Zych31_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-17T16:10:40-05:00", "date_modified": "2020-09-17T14:06:18-04:00" }, { "phage_name": "ZygoTaiga", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A blend of the Taiga forest near where I found my phage and zygote cause our phage was one of a kind.", "finder_name": "Carmen Aguirre ", "found_city": "Duluth", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "46.8 N", "found_GPS_long": "92.08 W", "found_year": 2012, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": false, "discovery_notes": "The phage we isolated was from a park in down town duluth. The location was surrounded by streets on all sides and had a playground within 300 feet. It was a grassy, and damp area near trees. I isolated the phage around 12:00am; the night was cloudy, foggy and colder (around 40*F) which made the soil sample very damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Our phage that we isolated are very small, clear plaques and this shows to be very consistent throughout our purification and empirical testing. From my observations in the past 2 months I have come to a conclusion that my plaque seems to be a lytic phage (of course there is no certainty in that but it has shown no expression of temperate characteristics). Our phage is very slow growing and can be somewhat difficult to work with, but our plates have come out very consistent.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-02-12", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 110, "finishing_reactions": 2, "genome_length": 157204, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 231, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/ZygoTaiga_Final_1.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/ZygoTaiga_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/ZygoTaiga_CoverSheet.docx", "submitted_annotation_date": "2014-05-15T23:40:16-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KM881426", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZygoTaiga_Plaque_2.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/ZygoTaiga_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/ZygoTaiga.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZygoTaiga_Plaque_2_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-10-15T14:21:12-04:00", "date_modified": "2025-09-13T06:42:25-04:00" }, { "phage_name": "Zylama", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name sounded cool.", "finder_name": "Atheer Alruwaili and Morgan Pattee", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.729426 N", "found_GPS_long": "117.16515 W", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The sample was collected in the middle of winter, one day after it rained. Leaves were brushed away to reveal it, then the sample was taken.", "isolation_temperature": 0, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were clear with no turbidity, the phage is lytic.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-27T09:20:21-04:00", "date_modified": "2023-04-27T09:20:21-04:00" }, { "phage_name": "Zynnie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage Zynnie because we thought it sounded cool and unique. This name is easily distinguishable from other phage names which can help researchers tell our phage apart from others.", "finder_name": "Eli Ash and Silas Willis", "found_city": "Boulder", "found_state": "CO", "found_country": "United States of America", "found_GPS_lat": "40.009171 N", "found_GPS_long": "105.269041 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "We collected our soil sample right outside of the University of Colorado's Porter science building. The soil that we collected our sample was very close to a tree and grass, but it was taken from a spot that had no grass on it. The soil was slightly moist, and was dark brown in color.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques of our phage were relatively big in diameter being ~3-5 mm in diameter. The plaques were clear on the edges and showed no signs of having halos which indicates that our phage is a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zynnie_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Zynnie_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T13:38:56-05:00", "date_modified": "2025-04-04T11:37:42-04:00" }, { "phage_name": "Zyntra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Natalie Tobias, Nicholas Anderson", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00977 N", "found_GPS_long": "105.26899 W", "found_year": 2025, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zyntra_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Zyntra_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Zyntra_Digest.HEIC", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T12:45:42-04:00", "date_modified": "2025-04-23T12:45:42-04:00" }, { "phage_name": "ZYrus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Random, thought it was an interesting and cool name.", "finder_name": "Brenna Franke and Theresa Lusk", "found_city": "Hudson ", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984444 N", "found_GPS_long": "92.75444 E", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Compost pile on west side of garage, next to alley. Compost includes kitchen scraps and yard waste. Mostly decomposed. \r\nSoil was semi-moist \r\ncollected on a sunny day 69 degrees F with no wind and low humidity \r\nsoil was at a depth of 30mm and \r\nsimilar to Strosahl", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "10mm,clear, about the size of a pea", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ZYrus_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/ZYrus_EMPic.PNG", "digest_file": "https://phagesdb.org/media/digestPics/ZYrus_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ZYrus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/ZYrus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-23T14:42:58-05:00", "date_modified": "2020-09-17T14:06:38-04:00" }, { "phage_name": "Zyxx", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage was named after Joel’s favorite science fiction podcast, \"Mission to Zyxx\", because it's all about discovery and messing things up.", "finder_name": "Tyler Pittman and Joel Pantuso", "found_city": "Hamilton", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.4367 N", "found_GPS_long": "84.645 W", "found_year": 2019, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "Sample came from dried, dead grass in a small ditch from a park.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are very small, around the size of the tip of a needle. Plaques are lysogenic, meaning they are hazy around the edges. Plaques grow larger as the infection progresses.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-26T14:38:19-04:00", "date_modified": "2023-01-26T07:29:57-05:00" }, { "phage_name": "Zzedenkathik", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maxwell Moberg", "found_city": "Richmond", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.4456 N", "found_GPS_long": "77.2522 W", "found_year": 2022, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": null, "discovery_notes": "The sample was collected on September 20th 2022. Ambient air temperature during initial isolation was approximately 18 degrees celsius. Purification, amplification and microscopy were completed by Alex Denny and Abdullah Humayun.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~6mm diameter with halo\r\n~4mm diameter excluding halo", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Zzedenkathik_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Zzedenkathik_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Zzedenkathik_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-11-29T09:16:49-05:00", "date_modified": "2025-09-12T10:30:29-04:00" } ] }
