Phage List
Detailed Phage Information
Access detailed information about all phages, or about a particular phage (given its name).
GET /api/phages/?format=api&page=7
{ "count": 28869, "next": "https://phagesdb.org/api/phages/?format=api&page=8", "previous": "https://phagesdb.org/api/phages/?format=api&page=6", "results": [ { "phage_name": "BobaBubble", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "All three of us love boba.", "finder_name": "Grace Lim", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.437416 N", "found_GPS_long": "79.953132 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Grace Lim\r\nPari Lakhia\r\nElizabeth Hunkele \r\n\r\nSample was taken from a small grassy area surrounded by sidewalk and road. Soil seemed dry with little pieces of sticks and rocks in it.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobaBubble_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-23T09:52:08-04:00", "date_modified": "2025-04-04T11:37:46-04:00" }, { "phage_name": "Bobadirt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the consistency of our sample because of the berries it looked like boba.", "finder_name": "Tyler Lustig and Jordan Zapata", "found_city": "Pullman", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "46.72995 N", "found_GPS_long": "117.16517 W", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "There was a mixture of local berries and dirt in our soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-09T09:18:34-05:00", "date_modified": "2022-12-09T09:18:34-05:00" }, { "phage_name": "BobaLexa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My favorite beverage is boba milk tea and I feel like every time I drink boba, my stress is relieved and makes me more motivated. my name is Axel and if you pronounce my name backward, it says Lexa", "finder_name": "Keina Yoo", "found_city": "Riverside", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.913 N", "found_GPS_long": "117.502 W", "found_year": 2019, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": false, "discovery_notes": "the soil is collected under the Tamarind tree in between Price Science Complex at La Sierra University, Riverside, California.", "isolation_temperature": 10, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of the plaque is lytic phage with clear plaques with relatively same size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-03-15T08:39:09-04:00", "date_modified": "2020-09-17T14:10:41-04:00" }, { "phage_name": "Bobaloo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We were struggling to find a name that was not already taken. So, we came up with a very unique name that had not yet been used.", "finder_name": "Emily Rasmussen, Jakob Gates", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66798 N", "found_GPS_long": "117.4035 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "When we were retrieving the samples needed the environment was on a rainy, wet August day. The dirt was wet from the rain, making the soil and ground a little harder to collect from. The sample was collected from a flowerbed next to College Hall on the campus of Gonzaga University.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our bacteriophage has absolutely tiny spots on it indicating its low activity levels. Our plaque has a titer level of 3.33*10^9.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-04T14:34:47-05:00", "date_modified": "2024-10-08T10:20:06-04:00" }, { "phage_name": "Bobalouis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bobalouis was named after someone who I found was very similar toward the nature of a bacteriophage, being that a bacteriophage destroys bacteria.", "finder_name": "Christina Zacconi", "found_city": "Secane", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.908167 N", "found_GPS_long": "75.312139 W", "found_year": 2018, "p_institution": { "institution_code": "NUMN", "institution_name": "Neumann University", "institution_logo": "https://phagesdb.org/media/institutions/NUMN.png", "institution_url": "https://www.neumann.edu/", "institution_city": "Aston", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Bobalouis was found in the soil at he beginning of the sidewalk outside of the front of our home. Bobalouis was collected from the soil when the temperature was eighty degrees farenheit.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Bobalouis' plaque morphology is a large size with a diameter: 2-5 mm \r\n\r\nPhage morphology - Head: 61.1 nm and\r\nTail length: 125 nm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobalouis_Plaque_mKLZ8fM.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobalouis_EMPic_lEtcUFY.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bobalouis_Digest_xLXa8Z5.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bobalouis.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/babalouis_tumb.jpg", "dnam_file": null, "date_added": "2018-10-17T16:07:54-04:00", "date_modified": "2021-12-08T15:41:15-05:00" }, { "phage_name": "Bobanne", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my parents Bob and Anne. Who have always supported my dreams; I wouldn't be the person I am today without their love and guidance.", "finder_name": "Brianna Kore", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.422843 N", "found_GPS_long": "75.680421 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in a garden bed of the Sandy Hill Community Garden.", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Forms very small clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobanne_Plaque_XtQXSWr.jpeg", "em_file": "https://phagesdb.org/media/emPics/Bobanne_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Bobanne_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobanne_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobanne_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-13T11:58:34-04:00", "date_modified": "2024-02-25T15:28:22-05:00" }, { "phage_name": "BobaPearl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I like eating boba pearls in my milk tea", "finder_name": "Joseph Zhu", "found_city": "Waltham", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.394374 N", "found_GPS_long": "71.241957 W", "found_year": 2024, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Was found in somewhat dry soil", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaques with clear boundaries", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobaPearl_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BobaPearl_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T22:25:23-05:00", "date_modified": "2024-12-06T22:25:23-05:00" }, { "phage_name": "BobaPhett", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A long time ago, in a galaxy far far away...existed Boba Phett, the ultimate bacteria bounty hunter. ", "finder_name": "Annette Kang", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.957689 N", "found_GPS_long": "75.18926 W", "found_year": 2015, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Discovered within the deep moist depths of the Earth next to a bushbed near the Buckley Tennis Courts on the Drexel University Campus, Boba Phett had a rough childhood, having been brought up in a rough neighborhood surrounded by constant foot traffic and uncomfortable amounts of human perspiration and other unmentionable fluids excreted by the human body.\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "- approx. 3.5-4mm \r\n- clear center with very slight haze surrounding the inner circumference of the phage\r\n- moderately aggressively in terms of growth rate since the size is relatively small in comparison to how much bacterial lawn was cleared during each infection ( a silent but deadly killer)\r\n", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1397, "finishing_reactions": 0, "genome_length": 59815, "gcpercent": "61.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGAAGGCGC", "sequencing_notes": "mixed sample, 16% reads Cluster B1", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 108, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobaPhett_CompleteNotes_3LHUSvc.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobaPhett_Minimal_Final_s7CXD9V.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BobaPhett_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BobaPhett_CoverSheet.pdf", "submitted_annotation_date": "2018-03-22T14:41:54-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobaPhett_final_flat.txt", "qced_genbank_file_date": "2018-03-22T14:41:54-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH155865", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobaPhett.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-03T19:19:35-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "Bobaroo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was inspired after our groups idol.", "finder_name": "Eugenia K, Emily S, Robert C, Reid S", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.3872 N", "found_GPS_long": "72.53019 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Sample was collected in a small hilly area, under a tree, and next to a Lacrosse Field.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque is 0.3cm in size and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bobaroo_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/bobaroo_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-10-26T11:02:27-04:00", "date_modified": "2024-08-09T12:01:20-04:00" }, { "phage_name": "Bobasaur", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a beloved drink and Pokemon, boba and Bulbasaur.", "finder_name": "Andrianne Dao and Sara Matsui", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.3192 N", "found_GPS_long": "72.6417 W", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "Collected off of the trail by Paradise Pond on Smith College campus. 9/15/2019.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-29T10:20:10-04:00", "date_modified": "2019-10-29T10:20:10-04:00" }, { "phage_name": "BobaSoba", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my best friend and one of her her favorite kind of noodles.", "finder_name": "Theresa Chiu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "", "found_GPS_lat": "40.439077 N", "found_GPS_long": "79.945469 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil sample was taken in Schenley park, under some dead leaves next to a baby tree.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium-sized satellite plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobaSoba_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BobaSoba_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-05-31T14:39:27-04:00", "date_modified": "2024-11-22T16:30:17-05:00" }, { "phage_name": "Bobb", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided on the name Bobb because we thought it was an accurate representation of our phages personality.", "finder_name": "Logan Wehrman, Tyler Thomas", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666503 N", "found_GPS_long": "117.404824 E", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We collected our phage sample behind the Hughes building on the Gonzaga campus, next to the Spokane River. The sample was dirt from the river shore.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Average plaque size of 5mm\r\nMany clumped together creating large circular plaques\r\nIndividual plaques are small and circular\r\nToo many plaques to count, ~60", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobb_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobb_EMPic.PNG", "digest_file": "https://phagesdb.org/media/digestPics/Bobb_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobb_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobb_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-11-08T18:36:06-05:00", "date_modified": "2020-09-17T14:11:49-04:00" }, { "phage_name": "BobbeMae", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I heard this name said at a funeral and I liked it, so I came up with my own spelling.", "finder_name": "Kiya Krings", "found_city": "River Falls", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "44.8548 N", "found_GPS_long": "92.623 W", "found_year": 2019, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Soil sample was originally found by Rebecca Smolka, in a ditch outside of North Hall on the University of Wisconsin-River Falls campus.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are very small, clear, and there are variations of them.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": 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1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-26T00:19:36-05:00", "date_modified": "2015-04-29T14:32:00-04:00" }, { "phage_name": "Bobblehead", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": 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"species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobblehead_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Bobblehead_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Bobblehead_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-02T14:08:20-05:00", "date_modified": "2024-02-25T15:28:04-05:00" }, { "phage_name": "BobBob", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name BobBob is a derivative of Spongebob which came from the results of a plate that looked like a sponge.", "finder_name": "Unknown", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4375 N", "found_GPS_long": "79.620278 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": 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They are also clear and not turbid.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-05-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 939, "finishing_reactions": 0, "genome_length": 58677, "gcpercent": "67.1", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobBob_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-05-31T11:01:20-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobBob_flat.txt", "qced_genbank_file_date": "2022-05-31T11:01:20-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON724014", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobBob.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-02T13:08:02-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "Bobby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "random name", "finder_name": "Yalda Mohamed", "found_city": "Saint Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.590793 N", "found_GPS_long": "90.344983 W", "found_year": 2016, "p_institution": { "institution_code": "WBST", "institution_name": "Webster University", "institution_logo": "https://phagesdb.org/media/institutions/WebsterU.jpg", "institution_url": "http://www.webster.edu/", "institution_city": "Webster Groves", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.589104", "institution_longitude": "-90.34342" }, "enriched_sample": false, "discovery_notes": "Under the mulch, under a tree next to the building. Soil was moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "larger plaques with an irregular halo", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-12-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 821, "finishing_reactions": 0, "genome_length": 110636, "gcpercent": "60.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "ATCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 220, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bobby_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bobby_Minimal_Final_1MuZYJN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bobby_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bobby_CoverSheet.pdf", "submitted_annotation_date": "2019-02-13T12:11:19-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bobby.gbf", "qced_genbank_file_date": "2019-02-13T12:11:19-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK524516", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobby_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Bobby_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bobby.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobby_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobby_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-12-16T14:09:30-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "BobbyBlackwatr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bobby Blackwater is a personal hero of mine so I thought it would be fitting to name my phage after him.", "finder_name": "Matt Grapel", "found_city": "Chappaqua", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.16558 N", "found_GPS_long": "73.780836 W", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "I found my sample in mid-January 2016. The soil sample was very hard because of how cold it was; I had to get it out of the ground using a shovel. It was about 30 degrees Fahrenheit outside and cloudy the day I collected my sample.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were fairly large compared to the plaques of my peers. They were all between 25 and 35 millimeters.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-05-01T22:17:39-04:00", "date_modified": "2020-09-17T14:07:17-04:00" }, { "phage_name": "BobbyDazzler", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ryan Phillips", "found_city": "Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.526700 N", "found_GPS_long": "92.073200 W", "found_year": 2015, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CA", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 999, "finishing_reactions": 0, "genome_length": 46641, "gcpercent": "58.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobbyDazzler_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobbyDazzler_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BobbyDazzler_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BobbyDazzler_CoverSheet.pdf", "submitted_annotation_date": "2016-05-26T17:44:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobbyDazzler_flat_y2EdQNS.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KY549154", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobbyDazzler_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BobbyDazzler_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobbyDazzler.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BobbyDazzler_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BobbyDazzler_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/BobbyDazzler_Qf5qLcX.dnam5", "date_added": "2015-09-25T12:35:24-04:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "Bobbyjay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after my grandfather who has always had bad luck with his health, so hopefully my phage heightens the chances of someone else's luck & health.", "finder_name": "Chelsey Halterman", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.429138 N", "found_GPS_long": "78.861465 W", "found_year": 2024, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "Found in dirt right next to the JMU arboretum pond. It was sunny, and the soil was moist.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are clear, but they are small.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobbyjay_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-05T08:06:01-05:00", "date_modified": "2024-11-05T08:06:01-05:00" }, { "phage_name": "BobbyK", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "This phage name is a two-fer. It is named in honor of my brother-in-law, Bobby K. who passed away November 6, 2022. It is also named after my favorite nephew, Bobby K.", "finder_name": "Deborah Jacobs-Sera", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.560634 N", "found_GPS_long": "80.010128 W", "found_year": 2023, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Phage was isolated from 50x concentrated wastewater collected from MTSA-Longview-1-STP on 10/5/23. Samples were concentrated on 10/13/23 after filtering (.22um) using 30kDa Centricon® Plus-70 Filter Units by Jakobi D, and tested for phage activity by Nate W. & Sergei E.-D.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 473, "finishing_reactions": 0, "genome_length": 70887, "gcpercent": "68.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobbyK_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-04-24T22:57:14-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobbyK.gbf", "qced_genbank_file_date": "2024-04-24T22:57:14-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP750967", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BobbyK-4-2.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobbyK.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BobbyK_EM_Thumb.png", "dnam_file": null, "date_added": "2024-01-03T15:59:10-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "BobbyPin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Trevor Cross and Rita Alcarez", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BobbyPin_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BobbyPin_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-07-20T05:02:17-04:00", "date_modified": "2017-09-12T10:27:32-04:00" }, { "phage_name": "BobbyQ", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose the name BobbyQ because we liked the name Bob but needed more characters in the name. We added the Q on the end because we though the plaques were small and cute.", "finder_name": "V Borges Perez, M Sodhi J Contreras K Swann-Thayer", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.390263 N", "found_GPS_long": "72.523013 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found across from the public health building, in the green area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaques were 3mm, circular, with a halo morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobbyQ_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bobbyq_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/bobbyq_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-28T12:13:11-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "BobbyRuntz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Loc Ha and Tyler Smyly", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-08T09:17:21-05:00", "date_modified": "2022-12-08T09:17:21-05:00" }, { "phage_name": "BobEcat5", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "David Puthoff", "found_city": "Frostburg", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.651194 N", "found_GPS_long": "78.931083 W", "found_year": 2024, "p_institution": { "institution_code": "FRST", "institution_name": "Frostburg State University", "institution_logo": "https://phagesdb.org/media/institutions/fsulogored.jpg", "institution_url": "https://www.frostburg.edu/", "institution_city": "Frostburg", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Next to building. Soil was wet and mossy", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T13:25:47-05:00", "date_modified": "2025-04-04T11:37:25-04:00" }, { "phage_name": "Bobert", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "If \"Rob\" is short for Robert, then it follows that \"Bob\" must be short for Bobert. As such, the phage was named Bobert to ensure that something has a name that is deserving of the nickname \"Bob\". ", "finder_name": "Ajay Mehta", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.331675 N", "found_GPS_long": "76.619463 W", "found_year": 2014, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Soil condition was moist and the sample was taken from a depth of about 1 cm. The temperature was 25 Degrees Celsius. The location from which the soil sample was taken was urban, close to buildings, close to a cement sidewalk, and next to street lamp. Sample was collected at 7:55 PM on September 2, 2014.\r\n\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were circular, clear, and slightly fuzzy around the edges. Additionally, plaques were small and had an average diameter of 2.4 mm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobert_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobert_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobert_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobert_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-03T11:44:47-05:00", "date_modified": "2020-09-17T14:05:59-04:00" }, { "phage_name": "Bobette", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My boyfriend's cat's wife. She is a brown tabby and lives outside.", "finder_name": "Mick Close", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.428849 N", "found_GPS_long": "78.861445 W", "found_year": 2023, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "Collected from muddy, rocky creek bed in the Edith J. Carrier arboretum.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-30T12:00:08-05:00", "date_modified": "2024-02-25T15:28:15-05:00" }, { "phage_name": "BoBetter", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We thought the original bacterial lawn looked liked Spongebob and so we decided to name it BoB which didn't meet the requirements so we chose Bobetter.", "finder_name": "Italia Ronco", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.451369 N", "found_GPS_long": "79.952481 W", "found_year": 2025, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Our group (Italia Ronco, Anisha Pai, Ravya Bajaj, and Ella Cook) found the phage around 4:30 pm in a garden box. The soil was moist due to rain the night prior and had a loose texture.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-09-15T16:38:01-04:00", "date_modified": "2025-09-15T16:38:01-04:00" }, { "phage_name": "Bobi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Margaret Korty and Stephanie Maas", "found_city": "North Liberty", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "41.512536 N", "found_GPS_long": "86.460357 W", "found_year": 2010, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Very small and slow growing plaques. The phage likes to shift plaque forms between platings. The general shape is a very small dot with a crescent shaped tail. The whole plaue usually doesn't measure more than 1mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-02-23", "seq_facility": null, "seq_method": null, "coverage": 739, "finishing_reactions": 0, "genome_length": 59179, "gcpercent": "61.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 107, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KF114874", "refseq_accession": "NC_022055", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobi_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bobi_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bobi_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bobi.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-08T11:00:45-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "Bobiana", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We picked a random name", "finder_name": "Joey, Margie, Sienna", "found_city": "Kenosha", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "42.618889 N", "found_GPS_long": "87.820556 W", "found_year": 2025, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": null, "discovery_notes": "We were given our phage by Katherine Rieckmann and Niki Theros.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "It was cloudy originally, after purification it went clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T15:02:13-04:00", "date_modified": "2025-04-23T15:02:13-04:00" }, { "phage_name": "Bobicorn", "old_names": "CityWok", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after my sister in law, Bob, who survived an AMR infection, sepsis, and several emergency surgeries.", "finder_name": "Ariana McCarroll", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.004036 N", "found_GPS_long": "115.271617 W", "found_year": 2019, "p_institution": { "institution_code": "CSNV", "institution_name": "College of Southern Nevada", "institution_logo": "https://phagesdb.org/media/institutions/college_of_southern_nevada.png", "institution_url": "https://www.csn.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The sample was taken by my professor, Dr. James Theoret. He retrieved the sample from a patch of grass in Mountain's Edge Park on a very warm and sunny day with low humidity.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Plaques were small, approximately 1 mm in diameter, clear with no noticeable turbidity.Plaques remained consistent throughout experimentation.", "lysogeny_notes": "Appears to be a lytic.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobicorn_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobicorn_EMPic_M4sDzEA.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bobicorn_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bobicorn_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobicorn_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-25T15:29:21-05:00", "date_modified": "2020-09-17T14:11:00-04:00" }, { "phage_name": "Bobita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a frog that I had named Bob.", "finder_name": "Yash Garodia", "found_city": "La Jolla", "found_state": "CA", "found_country": "United States of America", "found_GPS_lat": "32.87755 N", "found_GPS_long": "117.238717 W", "found_year": 2019, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": false, "discovery_notes": "Found under a tree, in a shady, trail-like area. Dug into the ground for better soil. Conditions were dry, with no rain during the week of extraction.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small capsid, long tail, relatively straight tail", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-05T23:01:36-05:00", "date_modified": "2019-12-05T23:01:36-05:00" }, { "phage_name": "BobJr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Molly Stetzer ", "found_city": "Butte", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": false, "discovery_notes": "Found in soil of backyard. \r\n\r\nRestriction digest and PCR unsucessful. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "light, large, spider-weby between, generally angular, haloed, only partially translucent in death zones", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-19T17:38:12-05:00", "date_modified": "2020-09-17T14:05:39-04:00" }, { "phage_name": "Bobla", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my father's nickname. ", "finder_name": "Sasha Thalluri", "found_city": "Birmingham", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "33.543682 N", "found_GPS_long": "86.779633 W", "found_year": 2018, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": false, "discovery_notes": "Sewage Sample", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Corynebacterium", "species": "xerosis", "strain_name": "ATCC 373", "strain_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "373", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobla_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bobla_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bobla_EMPic.jpg", "dnam_file": null, "date_added": "2018-10-31T14:24:45-04:00", "date_modified": "2020-09-17T14:10:28-04:00" }, { "phage_name": "BobLoblaw", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is entertaining to say.\r\n", "finder_name": "Colin Simms, Katy Grambo", "found_city": "Norfolk", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.185 N", "found_GPS_long": "76.216 W", "found_year": 2015, "p_institution": { "institution_code": "OLDU", "institution_name": "Old Dominion University", "institution_logo": "https://phagesdb.org/media/institutions/ODU_tag_fullcolor_logo.png", "institution_url": "https://www.odu.edu/", "institution_city": "Norfolk", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "36.886285", "institution_longitude": "-76.30442" }, "enriched_sample": true, "discovery_notes": "Found in a flower bed in front of an Orchid Conservatory. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small plaques ~2.2E^5 nm.\r\n\r\nPlaques are uniform, round\r\n\r\n", "lysogeny_notes": "Plaques are lytic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobLoblaw_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BobLoblaw_EMPic.JPG", "digest_file": "https://phagesdb.org/media/digestPics/BobLoblaw_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BobLoblaw_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-10-30T12:46:11-04:00", "date_modified": "2020-09-17T14:06:30-04:00" }, { "phage_name": "Bobo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emily Rados", "found_city": "Forest Hills", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.714406 N", "found_GPS_long": "73.842283 W", "found_year": 2011, "p_institution": { "institution_code": "CUNY", "institution_name": "CUNY, Queens College", "institution_logo": "https://phagesdb.org/media/institutions/QueensCollegeB.png", "institution_url": "http://www.qc.cuny.edu/", "institution_city": "Queens", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.736562", "institution_longitude": "-73.82028" }, "enriched_sample": null, "discovery_notes": "The sample of soil I obtained is a very rich and dark color of brown. It is rather chunky, and the dirts are clumped together in small groups. The soil seems very thick, yet contains some moisture due to Hurricane Irene’s rainfall. To add another factual observation, hornets were seen dwelling and making their homes in the soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobo_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-10-08T13:01:57-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Boboddy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from an episode in the tv show, \"The Office\". ", "finder_name": "Mia Wessel and Jezica Siarez", "found_city": "Catonsville", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.2582 N", "found_GPS_long": "76.7084 W", "found_year": 2018, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "-1-2mm\r\n-clear circles\r\n-smooth edges", "lysogeny_notes": "n/a", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boboddy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boboddy_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BOBODDY_Plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/S6G4-Thumb.jpg", "dnam_file": null, "date_added": "2018-10-09T12:21:16-04:00", "date_modified": "2020-09-17T14:10:08-04:00" }, { "phage_name": "BoboddyBiznus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nolan Brady, Max Vitti", "found_city": "Boulder", "found_state": "CO", "found_country": "Boulder County", "found_GPS_lat": "40.009186 N", "found_GPS_long": "105.268942 W", "found_year": 2020, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque was clear and about 1mm diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoboddyBiznus_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/BoboddyBiznus_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/BoboddyBiznus_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoboddyBiznus_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-11T17:18:27-05:00", "date_modified": "2021-05-04T09:51:00-04:00" }, { "phage_name": "BoBoMo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Devan Bruggeman", "found_city": "Kenosha", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "42.6215 N", "found_GPS_long": "87.82099 W", "found_year": 2023, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "At Carthage College outside of the cafeteria", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage is 0.15 mm in diameter, clear, and circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-26T10:54:26-04:00", "date_modified": "2024-02-25T15:28:24-05:00" }, { "phage_name": "BoboTee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nickname of phage finder", "finder_name": "Hamidu Tei Mohammed", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.661834 N", "found_GPS_long": "75.410016 W", "found_year": 2022, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "Soil taken from a garden, moist and gritty.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "After 48hr incubation, plaques are ~1.0-1.5mm in size and very cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoboTee_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoboTee_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-06-22T14:05:53-04:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "BobPaul1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from Eleanor Behling's father, whose first name is Robert and middle name is Paul. Robert helped to collect the soil sample the phage was isolated from.", "finder_name": "Eleanor Behling", "found_city": "Loveland", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.249238 N", "found_GPS_long": "84.240001 W", "found_year": 2017, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "The soil sample that BobPaul1 was isolated from was moist and dark in color. The soil was collected from the bank of a creek in Loveland, Ohio. The sample was then transferred to Bowling Green. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques formed by BobPaul1 are not perfectly clear and fall more on the opaque spectrum. They also appear in both large and small sizes. The plaque shape remains vaguely circular. \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobPaul1_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BobPaul1_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BobPaul1_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BobPaul1_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-01T14:12:47-05:00", "date_modified": "2020-09-17T14:08:23-04:00" }, { "phage_name": "Bobquesha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I couldn't think of a name, and Bob was too short.", "finder_name": "Ian Jackson", "found_city": "Provo", "found_state": "UT", "found_country": "United States", "found_GPS_lat": "40.208577 N", "found_GPS_long": "111.644641 E", "found_year": 2024, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": false, "discovery_notes": "Sample found at the Provo City Dump", "isolation_temperature": 85, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-02-13", "seq_facility": { "short_name": "CD", "facility_name": "CD Genomics", "contact_person": "", "shipping_address": "", "facility_website": "https://www.cd-genomics.com/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4448, "finishing_reactions": 0, "genome_length": 55192, "gcpercent": "67.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGCGGCCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bobquesha_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bobquesha_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bobquesha_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bobquesha_CoverSheet.pdf", "submitted_annotation_date": "2025-07-07T14:02:25-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bobquesha_EMPic.pdf", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bobquesha.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T13:34:06-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "BobRoss", "old_names": "", "program": { "short_name": "KBRIN", "program_name": "Kentucky Biomedical Infrastructure Network Small Genomes Discovery Program", "program_blurb": "", "program_URL": "" }, "naming_notes": "I love Bob Ross", "finder_name": "Kristin Briggs", "found_city": "Louisville", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "38.124722 N", "found_GPS_long": "85.576111 W", "found_year": 2018, "p_institution": { "institution_code": "SPAL", "institution_name": "Spalding University", "institution_logo": "https://phagesdb.org/media/institutions/Spalding_Universitys_Logo.jpg", "institution_url": "https://spalding.edu/", "institution_city": "Louisville", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found on surface of a rock partially submerged by a pond in a residential neighborhood.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Turbid 1-2 mm plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobRoss_Plaque.zip", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/20180405_101500.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-23T20:31:56-04:00", "date_modified": "2020-09-17T14:10:24-04:00" }, { "phage_name": "BobRoss2024", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose BobRoss2024 because we got a phage isolate by mistake and Bob Ross used to say \"In art, there are no mistakes, just happy little accidents.\"", "finder_name": "Sebastian Olmeda", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.44396 N", "found_GPS_long": "79.55565 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Names of group members: Deniz Cinemre, Gunes Cinemre, Sebastian Olmeda.\r\nThe soil sample was collected from the patch of grass in front of the Soldiers and Sailors building. The surrounding environment is a mix of sidewalks next to a busy street and a patch of grass with some trees. Since it was rainy when the sample was collected, it was muddy and wet. The soil was collected to the size of a golf ball using sterile disposable gloves.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DR", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-07-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4092, "finishing_reactions": 0, "genome_length": 60975, "gcpercent": "68.6", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobRoss2024.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-02-16T07:20:35-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "BobRossJr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named out phage after Bob Ross to be a bit humorous because both our phage and Bob Ross are tall, skinnier, and have a bit of an afro.", "finder_name": "Hailey Landkammer and Morgan Honner", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.664581 N", "found_GPS_long": "117.397636 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected August 31st, 2021. The soils was taken from around an inch or two deep in a grassy area. It was not a shaded area but most likely well watered. It was later in the summer so it was still fairly warm and sunny. The soil was relatively soft and easy to collect.", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques of this phage were not super large but were not small, and had slightly cloudy edges. Some of the plaques also appeared a bit larger than other but this could have been due to the smaller plaques still being in development.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobRossJr_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BobRossJr_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/PlaqueMorphology.jpg_2.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Image_11-30-21_at_3.18_PM.jpeg", "dnam_file": null, "date_added": "2021-12-08T15:20:55-05:00", "date_modified": "2022-03-16T11:02:40-04:00" }, { "phage_name": "BobsGarage", "old_names": "TheBob", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after Bob Serpa.", "finder_name": "Lexi Marx", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.49153 N", "found_GPS_long": "80.034324 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil dampened by morning dew, found at edge of woods near a bird feeder.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-06-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 175, "finishing_reactions": 0, "genome_length": 68102, "gcpercent": "58.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 112, "num_tRNAs": 12, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobsGarage_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-14T20:00:02-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobsGarage.gbf", "qced_genbank_file_date": "2019-10-14T20:00:02-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN586030", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobsGarage.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/BobsGarage.dnam5", "date_added": "2016-05-16T16:31:47-04:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "BobSquared", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emily Nolting", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.850475 N", "found_GPS_long": "92.624642 W", "found_year": 2012, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "9/10/12 around 4pm\r\n79 ? F\r\nSoil was moist\r\nClose to creek, on slope, near rocks, little foot traffic, by bridge near amphitheater on University of Wisconsin-River Falls campus\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "3mm-5mm in size\r\nMostly turbid plaques\r\nPlaques didn't really change throughout the whole process, usually varied in sizes between 3 and 5 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobSquared_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BobSquared_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/BobSquared_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BobSquared_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BobSquared_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-29T13:57:26-05:00", "date_modified": "2017-09-12T10:27:29-04:00" }, { "phage_name": "Bobsrjrthe3", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jose Morales", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "36.991330 N", "found_GPS_long": "122.060899 W", "found_year": 2009, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": null, "discovery_notes": "Soil collected was dark, cloudy, and slightly moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Temperature was 37 degrees Celsius. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobsrjrthe3_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobsrjrthe3_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bobsrjrthe3_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bobsrjrthe3_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bobsrjrthe3_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-01-27T10:11:55-05:00", "date_modified": "2015-04-29T14:32:00-04:00" }, { "phage_name": "BobSwaget", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nick K., Adam N., Geslyn.", "found_city": "Andover", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.669444 N", "found_GPS_long": "71.147778 W", "found_year": 2015, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1885, "finishing_reactions": 0, "genome_length": 50400, "gcpercent": "63.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobSwaget_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BobSwaget_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BobSwaget_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BobSwaget_CoverSheet.pdf", "submitted_annotation_date": "2017-06-02T10:13:37-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BobSwaget.gbf", "qced_genbank_file_date": "2017-06-02T10:13:37-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF185727", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BobSwaget_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BobSwaget.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BobSwaget_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/BobSwaget.dnam5", "date_added": "2015-11-19T16:08:00-05:00", "date_modified": "2025-09-13T06:41:09-04:00" }, { "phage_name": "Bobtastic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was originally Fred, but it was changed to Bobtastic due to complications. I wanted the name to be a simple name, but there were none left, so I added a twist to it, hence Bobtastic.", "finder_name": "Elijah Torgerson", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00908 N", "found_GPS_long": "105.26892 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The site was next to a small grass lawn with a tree near it. Date collected: 9/11/24\r\nTime: 10:31 AM", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Morphology of phage is Temperate, as the phage is observed to undergo a lysogenic lifestyle.", "lysogeny_notes": "Temperate Phage", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bobtastic_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bobtastic_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-08T16:37:48-05:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "BobTheTomato", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Inspirational Veggie Tales character", "finder_name": "Taylor Smith, Parker Coleman", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66863 N", "found_GPS_long": "117.40299 W", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Snowing (4in of snow on the ground), 20-30 degrees outside, mid January 2020, soil was difficult to break up (dirt mixed with wood chips)", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "slight halo around each of the plaques, about in 3mm diameter, all roughly the same size and space (circular)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BobTheTomato_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BobTheTomato_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BobTheTomato_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BobTheTomato_EMPic_Thumb.png", "dnam_file": null, "date_added": "2020-04-22T18:28:24-04:00", "date_modified": "2021-01-28T11:04:20-05:00" }, { "phage_name": "Bocchi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named it Bocchi because she is a main character in the anime we watched together thats about a band.", "finder_name": "Nicolas, SHunsuke, Tomo, Yanlin", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.349681 N", "found_GPS_long": "72.524121 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found in our backyard in our apartment at Amherst, MA. The soil was moist but not muddy and next to a bush and a tree.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-01T10:23:26-04:00", "date_modified": "2025-04-01T10:23:26-04:00" }, { "phage_name": "Bocco", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Amanda Harra", "found_city": "Spring Hill", "found_state": "KS", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UKAN", "institution_name": "University of Kansas", "institution_logo": "https://phagesdb.org/media/institutions/KUsigvert2C.png", "institution_url": "http://www.kansas.edu/", "institution_city": "Lawrence", "institution_state": "KS", "institution_country": "USA", "institution_latitude": "38.954649", "institution_longitude": "-95.25581" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-09T19:00:57-05:00", "date_modified": "2020-09-17T14:06:16-04:00" }, { "phage_name": "Bocefus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nicole Hesseltine", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "*** Bocefus was the 2200th phage entered in the Mycobacteriophage Database! ***", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bocefus_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bocefus_EMPic_Thumb_FdO7lCC.png", "dnam_file": null, "date_added": "2011-12-07T06:08:10-05:00", "date_modified": "2020-06-04T22:31:59-04:00" }, { "phage_name": "Bocephus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Austin Ruskamp", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-17T15:51:46-05:00", "date_modified": "2020-09-17T14:05:40-04:00" }, { "phage_name": "Bock", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I called my grandfather Bocky and he was the one who got me interested in biology", "finder_name": "Kate DeHeer", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.929439 N", "found_GPS_long": "85.588667 W", "found_year": 2016, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "Next to flower in garden soil", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DI", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "fuzzy edges, 2 - 3 mm depending on incubation period", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-01", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 540, "finishing_reactions": 0, "genome_length": 50220, "gcpercent": "67.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TGCCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bock_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-04-19T12:53:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bock.gbf", "qced_genbank_file_date": "2021-04-19T12:53:42-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ005677", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bock_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bock_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bock.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bock_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bock_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-12-01T22:57:08-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boco", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michelle Keag", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.011667 N", "found_GPS_long": "105.268056 W", "found_year": 2011, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": null, "discovery_notes": "08/28/11, 2 cm, 20°C\r\nDamp Soil along Boulder Creek river bank\r\nMuddy, rural, no buildings in close proximity, foot path ~10m away, trees ~5m away, sample is moist and thick", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1mm diameter\r\nhaloed and turbid\r\nincubated 48h at 37°C\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boco_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boco_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boco_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boco_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boco_EMPic_Thumb_4Rr1ckU.jpg", "dnam_file": null, "date_added": "2011-12-17T12:18:52-05:00", "date_modified": "2020-07-30T11:11:24-04:00" }, { "phage_name": "Bodacious", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It refers to the large size of our phage", "finder_name": "Olivia Zerbo and Eve Plank", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.19 N", "found_GPS_long": "72.38 W", "found_year": 2017, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "Rocky soil sample from a small stream on a warm, rainy day. September 20th at 12:35pm.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, clear phage plaques with rough but defined edges. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-02-08", "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1984, "finishing_reactions": 0, "genome_length": 43239, "gcpercent": "60.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GGTAACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 61, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bodacious_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-20T09:24:35-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bodacious.gbf", "qced_genbank_file_date": "2018-10-20T09:24:35-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112531", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bodacious_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Bodacious_EMPic.PNG", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bodacious.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bodacious_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Bodacious.dnam5", "date_added": "2017-11-30T12:32:07-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BodEinwohner17", "old_names": "Bodeinwohner17", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A contraction of \"boden\" (meaning \"soil\") and \"einwohner\" (meaning \"inhabitant\" or \"resident\"). These two German words form a contraction which describes the origin of this bacteriophages. The fact that they are from German refers to the fact that Mycobacterium smegmatis, the host bacterium, was first isolated by Lustgarten. \"17\" refers to the year in which it was isolated.", "finder_name": "Seth Donnelley", "found_city": "Lincoln University", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.804235 N", "found_GPS_long": "75.924834 W", "found_year": 2017, "p_institution": { "institution_code": "LINC", "institution_name": "Lincoln University", "institution_logo": "https://phagesdb.org/media/institutions/LincolnLogo.jpg", "institution_url": "http://homepage.lincoln.edu/", "institution_city": "Lincoln University", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.808339", "institution_longitude": "-75.92744" }, "enriched_sample": true, "discovery_notes": "I isolated this phage from a soil sample collected in a relatively low area on the Lincoln University campus, in the soil under a fir tree. The soil under the tree had only a small amount of moss on the surface, but was still quite moist due to the somewhat high humidity and shaded conditions under the tree. The temperature of the surrounding air was ~19*C, and the sky was mostly sunny.", "isolation_temperature": 19, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "The mean diameter of the plaques formed by this phage is ~2.6mm. Most of them have a smaller circle with a diameter of ~1.0mm in the center which is completely clear. Outside of this, there is a band of cloudy material, which starts near its inside border as being just as defined as the bacterial lawn on the rest of the plate outside the plaque, but which becomes almost completely clear towards the outside of the plaque. Here, a cleared ring is formed, sometimes directionally, with respect to the plaque as a whole. Additionally, there appears to be a lighter \"halo\" under the surface of the bacterial lawn/top agar for some of the plaques, which extends out ~2.0mm from each plaque. This could be caused by the infiltration of air under the surface of the top agar where the clearings had exposed this area to the air.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1902, "finishing_reactions": 0, "genome_length": 60222, "gcpercent": "61.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGACGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 116, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BodEinwohner17_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-01-03T14:53:41-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BodEinwohner17.gbf", "qced_genbank_file_date": "2020-01-03T14:53:41-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN945900", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BodEinwohner17.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/BodEinwohner17.dnam5", "date_added": "2017-11-14T20:06:50-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boden", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name means ground/soil in German", "finder_name": "Christopher Rosipajla, Austin Wonder", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.007581 N", "found_GPS_long": "105.265942 W", "found_year": 2017, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": false, "discovery_notes": "Date Collected: February 7, 2017 \r\nTime Collected: 10:15 AM\r\nCity, State of Sample Site: Boulder, Colorado \r\nApproximate Temperature: 11º C\r\nDescribe Sample Site: Sample was found next to the boulder creek after a snowy week, making the sample soil very moist and cold. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque Morphology: Lytic, Clean, and Circular \r\nSize mm: 3-4\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-05-01T09:29:02-04:00", "date_modified": "2020-09-17T14:08:50-04:00" }, { "phage_name": "Bodhi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bodhi is the name of my dog, who is named after the tree which Siddhartha Guattama sat under when he gained enlightenment. My dog acts almost as if he is a virus, so it was fitting to mane my phage after him.", "finder_name": "Andrew King", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.207671 N", "found_GPS_long": "97.14892 W", "found_year": 2016, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The soil sample was found outside of the denton wesley foundation in a puddle that was sitting stagnant for about 2 weeks. Collceted at 10:27am on 9/11/16 at 80 degrees F.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque diameter is about 2mm each, circular shaped.", "lysogeny_notes": "This is a temperate phage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "xanthochromogenes", "strain_name": "NRRL B-5410", "strain_species": { "id": 53, "genus": "Streptomyces", "species_name": "xanthochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Streptomyces_xanthochromogenes" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 53, "genus": "Streptomyces", "species_name": "xanthochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Streptomyces_xanthochromogenes" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-19T23:09:41-04:00", "date_modified": "2020-09-17T14:07:21-04:00" }, { "phage_name": "Bodhi17", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my dog Bodhi who we bought in 2017.", "finder_name": "Ella Conway", "found_city": "Oxford", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.51855 N", "found_GPS_long": "84.73685 W", "found_year": 2023, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a dry area with little or mostly dead vegetation.", "isolation_temperature": 24, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, isolated plaques formed.", "lysogeny_notes": "Plaques were observed to be lytic and very clear.", "seq_finished": true, "date_finished": "2024-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 977, "finishing_reactions": 0, "genome_length": 17482, "gcpercent": "68.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bodhi17_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-05-28T09:42:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bodhi17_flat.txt", "qced_genbank_file_date": "2024-05-28T09:42:19-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978867", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bodhi17_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Bodhi17_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Bodhi17_Digest.PNG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bodhi17.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-13T07:56:43-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BodiBoy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "One of our group member's dog's name is Bodi, and we wanted to name our phage after him because we are all dog lovers.", "finder_name": "A. Lane, S. DiSalvo, A. Beiner, M. Gillespie", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38889 N", "found_GPS_long": "72.52649 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found next to the Umass Amherst campus pond in a muddy area with a little amount of grass.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques vary in sizes. Some are 1mm while the others range in size down to about 0.1mm. They all have a clear, bullseye morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bodiboy_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BodiBoy_EMpic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-27T10:41:27-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "Boe26", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ashley Tiemeyer", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.47267 N", "found_GPS_long": "86.06281 W", "found_year": 2011, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "Soil sample was taken from the surface of damp soil that had been covered with mulch at 6:40pm on September 7. It was taken form the base of a medium sized rock used as part of landscaping on the northwest corner of Graves Hall on the Hope College campus.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques ranged from 3-6mm in diameter and had a slightly turbid inner circle and a more turbid outer ring that was very faint giving the appearance of a fuzzy edge. Plaque growth was completed in 24 hours when incubated at 37° C.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boe26_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boe26_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boe26_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boe26_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boe26_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-25T06:38:08-05:00", "date_modified": "2022-10-20T11:27:17-04:00" }, { "phage_name": "Boehler", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Boehler\" comes from the location in which I collected the sample from. Boehler's Greenhouse is a local, family owned business in which they were generous enough to allow a sample to be taken from their plant compost pile in the back.", "finder_name": "Victoria Parker", "found_city": "Saginaw", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "43.381475 N", "found_GPS_long": "84.016327 W", "found_year": 2018, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "Sample soil was gathered in a compost in the back of a greenhouse. It had rained the previous day so the soil was moist approximately 4-5 inches under the surface where I collected the sample. Soil was collected from compost mainly of rotten vegetables, fertilizer and dead plants making this an ideal candidate for phage samples for isolation.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are consistantly medium in size and turbid throughout. Density-Independent.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1036, "finishing_reactions": 0, "genome_length": 68341, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boehler_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boehler_Minimal_Final_EeFI62W.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Boehler_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Boehler_CoverSheet.pdf", "submitted_annotation_date": "2020-08-12T14:07:05-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boehler_flat.txt", "qced_genbank_file_date": "2020-08-12T14:07:05-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT897902", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boehler_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Boehler_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boehler.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boehler_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-08T16:12:40-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boersma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Aasmitha Chittura", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.546757 N", "found_GPS_long": "97.12077 W", "found_year": 2015, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "The soil was collected in 2014 by Aasmitha Chitturi. Other phages isolated from this soil include Cadence and LouiseB.", "isolation_temperature": 21, "growth_notes": "", "pcluster": { "cluster": "AQ", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "- 2mm in diameter\r\n-Lytic\r\n- consistent morphology", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3056, "finishing_reactions": 0, "genome_length": 59188, "gcpercent": "52.9", "end_type": "TREP", "repeat_length": 1584, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 7, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boersma_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boersma_Minimal_Final_dn9v4rL.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Boersma_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Boersma_CoverSheet.pdf", "submitted_annotation_date": "2020-03-03T23:58:19-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boersma.gbf", "qced_genbank_file_date": "2020-03-03T23:58:19-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT310874", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Boersma_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Boersma_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boersma.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Boersma_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-09-01T15:40:59-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bofa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I'm a very big fan of Updog.", "finder_name": "Dominick Dag", "found_city": "Tampa", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": "The soil sample was taken from a patch of very dark, moist soil with many plants growing around it. There was probably a great deal of decomposing vegetation in the soil as well. The temperature was about 79°F and the humidity was about 83%.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques formed by this phage are very irregular in shape in size, ranging anywhere from about .1 mm to some as big as 1.5mm. They also have jagged edges rather than being relatively clean circles.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bofa_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T13:19:51-04:00", "date_modified": "2024-01-22T07:15:14-05:00" }, { "phage_name": "Bofa2020", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I wanted to encapsulate the growth that society endured during 2020", "finder_name": "Sierra Maestas", "found_city": "Omaha", "found_state": "NE", "found_country": "Unites States", "found_GPS_lat": "41.2075 N", "found_GPS_long": "96.06 W", "found_year": 2021, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "Garden Bed in Back Yard.\r\n\r\nAdopted by Abby Mommeson.", "isolation_temperature": 51, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque growth and size increased after each dilution and isolation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bofa2020_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bofa2020_EMPic.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Bofa2020_VirtualDigest.tif", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-03T14:28:47-05:00", "date_modified": "2025-07-11T12:34:11-04:00" }, { "phage_name": "Bofa24", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Andre Molina", "found_city": "Columbia", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.214169 N", "found_GPS_long": "76.853528 W", "found_year": 2021, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~2mm in diameter, cloudy, circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Gr9_S7_Bofa24_Thumb.png", "dnam_file": null, "date_added": "2021-10-21T09:33:54-04:00", "date_modified": "2022-03-16T11:01:37-04:00" }, { "phage_name": "Bofenkamp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Surname of discoverer", "finder_name": "Matthew Bofenkamp", "found_city": "Freeman Island", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "48.699197 N", "found_GPS_long": "122.95178 W", "found_year": 2014, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": false, "discovery_notes": "-Freeman Island is not incorporated in a city, but is an uninhabited island in the San Juan archipelago.\r\n\r\n-Soil containing the phage found in dirt under a bush on the Northwestern side of the Island, on top of the cliff on which most of the vegetation on the island lies.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bofenkamp_Plaque_1.jpg", "em_file": "https://phagesdb.org/media/emPics/Bofenkamp_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bofenkamp_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-05T21:01:59-05:00", "date_modified": "2024-02-25T15:27:49-05:00" }, { "phage_name": "Bogey1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named bogey because a bogey is not ideal, and this phage could be a hassle to extract and to get to grow. Mostly, though, it is a fun name.", "finder_name": "Abby Meder", "found_city": "Lancaster", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.2 N", "found_GPS_long": "76.17 E", "found_year": 2017, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "Found in moist soil that was half in the sun and half in the shade. It was found about 5 inches below the surface of the soil.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques of this phage are clear and less than 1 cm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bogey1_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bogey1_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-03T07:31:59-04:00", "date_modified": "2020-09-17T14:08:11-04:00" }, { "phage_name": "Bogg", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was affectionately named after my partner's and my very special cat, \"Bog\". His favorite things include: basking in the sun, lying on a chest and stealing someone's chair.", "finder_name": "Astrid Kühn", "found_city": "Cape Town", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2025, "p_institution": { "institution_code": "TASK", "institution_name": "TASK South Africa", "institution_logo": "https://phagesdb.org/media/institutions/TASK-Logo.png", "institution_url": "https://task.org.za/", "institution_city": "Cape Town", "institution_state": "", "institution_country": "South Africa", "institution_latitude": "33.904681 S", "institution_longitude": "18.586653 E" }, "enriched_sample": true, "discovery_notes": "Discovered in enriched soil sampled from a flowerbed.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "E", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Bog forms turbid plaques, 2-5 mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-08-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2054, "finishing_reactions": 0, "genome_length": 75507, "gcpercent": "63.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCTTGTCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 144, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bogg_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bogg_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bogg.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bogg-EM-TN.jpg", "dnam_file": null, "date_added": "2025-06-09T10:27:50-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BoggsAccount", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A reference to an inside joke among me and friends.", "finder_name": "Segun Ogundayo", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445774 N", "found_GPS_long": "79.957522 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Weather at collection time: Mostly cloudy, 77 degrees F, 71% humidity\r\n\r\nWeather past 24 hours: Partly cloudy, 71 degrees F, 50% humidty\r\n\r\nSample was taken at 9:42 PM and transported for 30 minutes before storage\r\n\r\nSoil conditions: moist, grainy, covered with debris and decayed plant matter\r\n", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Ovoid in shape and clear and are approximately 1.5mm in diameter. Extend outwards from initial \"drop\" site of phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoggsAccount_Plaque_5RsmXdg.jpg", "em_file": "https://phagesdb.org/media/emPics/BoggsAccount_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoggsAccount_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/BoggsAccount_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-10-27T21:40:13-04:00", "date_modified": "2020-09-17T14:07:42-04:00" }, { "phage_name": "Boggy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The discovery location was bog-like.", "finder_name": "Chloe Chedester", "found_city": "Richmond", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.4455 N", "found_GPS_long": "78.4213 W", "found_year": 2024, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "Found in the Arboretum of James Madison University. Sample collected from mud near pond.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boggy_Plaque.pdf", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-02-18T14:39:58-05:00", "date_modified": "2025-07-30T15:35:25-04:00" }, { "phage_name": "Bogie", "old_names": "Spook", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the term ghost in phages. i.e(synonym for ghost)", "finder_name": "Reid Rogers", "found_city": "Camden", "found_state": "AR", "found_country": "USA", "found_GPS_lat": "33.470016 N", "found_GPS_long": "92.873349 W", "found_year": 2015, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "Depth: 1.27 cm\r\n\r\nMoist soil\r\n\r\nTemp: 33.8889 Celsius\r\n\r\nLocation: Latitude: 33.4700165\r\nLongitude: -92.87334859\r\nSea Level: 67 m\r\n\r\nWeather:\r\n24 August 2015 - 30 August 2015\r\n\r\nTemperature:\r\nMax- 33.8889 degrees Celsius\r\nMean- 23.8889 degrees Celsius\r\nMin- 13.8889 degrees Celsius \r\n\r\nPrecipitation:\r\nRained 1.1938 cm on 24 August 2015\r\n25 August 2015 - 30 August 2015 no precipitation occured.\r\n\r\n\r\nSoil Sample Collection Information:\r\n. On a North facing slope\r\n. 20.32 cm above a pool of stagnant water with film on surface\r\n. Flowing creek 243.84 cm from sample location\r\n. Collected under green moss with red buds that released a fine red powder\r\n. Collected below an oak tree and holly tree \r\n. Just above sample site a decomposing oak tree with fungus is present\r\n. No human traffic in proximity of sample site\r\n. Deer and raccoon traffic around sample site\r\n. Asphalt road approximately 32 meters from collection site\r\n\r\n", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "Small circular plaques with a large halo on the exterior. Hazy center and cloudy edges. Temperate phage resemblance. ", "lysogeny_notes": "Further experiments were done with our phage in order to test its lysogeny. A serial dilution of our HTL was used for a spot test in order to determine which dilution formed the best mesa. The undiluted HTL formed the best mesa. We grew this M. smegmatis (Bogie) on a clean TA plate and tested it on a bacterial lawn for halo formation. A halo formed and the lysogen grew. Therefore, Bogie is a great lysogen candidate. ", "seq_finished": true, "date_finished": "2016-02-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2988, "finishing_reactions": 0, "genome_length": 48639, "gcpercent": "66.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "CCCGCCCCCCGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 81, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bogie_flat_Cua3OcD.txt", "qced_genbank_file_date": "2017-05-15T13:06:14-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF133446", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bogie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bogie_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bogie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bogie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bogie_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Bogie_CVCLhGK.dnam5", "date_added": "2015-10-02T12:11:21-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BogosyJay", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Jay Hogeboon", "found_city": "Antsirabe", "found_state": "", "found_country": "Madagascar", "found_GPS_lat": "19.873315 S", "found_GPS_long": "47.028947 E", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Isolated at room temperature.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A9" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-07-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1299, "finishing_reactions": 0, "genome_length": 53217, "gcpercent": "62.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BogosyJay_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-07-24T15:51:11-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BogosyJay.gbf", "qced_genbank_file_date": "2019-07-24T15:51:11-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN234235", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BogosyJay_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BogosyJay_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BogosyJay.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BogosyJay_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bogosyjay_thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/BogosyJay.dnam5", "date_added": "2018-07-20T16:39:39-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bogota", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the tv show Money Heist. Bogota is one of my favorite characters.", "finder_name": "Sara McCown", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.219166 N", "found_GPS_long": "97.160091 W", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": false, "discovery_notes": "The weather was partly cloudy with slightly humid air. The soil was 5 inches away from a sidewalk and I dug about an inch in the ground. The soil was moist and had a mixture of a brown reddish and dark brown color. I dug in between the weeds with a plastic spoon and put the sample in a plastic bag.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BH", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques around 1 mm, cloudy pinpoint. Lysogenic life cycle", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-09-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1604, "finishing_reactions": 0, "genome_length": 54184, "gcpercent": "68.3", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 81, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bogota_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2023-05-02T16:10:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bogota_flat.txt", "qced_genbank_file_date": "2023-05-02T16:10:32-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": { "title": "Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species.", "abstract": "Cluster BE1 Streptomyces bacteriophages belong to the Siphoviridae, with genome sizes over 130 kbp, and they contain direct terminal repeats of approximately 11 kbp. Eight newly isolated closely related cluster BE1 phages contain 43 to 48 tRNAs, one transfer-messenger RNA (tmRNA), and 216 to 236 predicted open reading frames (ORFs), but few of their genes are shared with other phages, including those infecting Streptomyces species.", "full_author_list": "Hughes LE, Shaffer CD, Ware VC, Aguayo I, Aziz RM, Bhuiyan S, Bindert IS, Calovich-Benne CK, Chapman J, Donegan-Quick R, Farooq A, Garcia C, Graham LH, Green BY, Kenna MA, Kneeream ER, Laing CE, Mageeney CM, Meridew SN, Mikolon AR, Morgan RE, Nayek S, Olugbade ID, Pike KC, Schlegel LE, Shishido TC, Suresh T, Suri N, Weston Hafer K, Garlena RA, Russell DA, Cresawn SG, Pope WH, Jacobs-Sera D, Hatfull GF", "short_author_list": "Hughes LE et al.", "article_url": "", "journal": "Genome Announcements", "journal_volume": "", "journal_issue": "", "journal_pages": "", "pub_year": "2018", "pubmed_id": "29326201" }, "in_genbank": true, "genbank_accession": "OQ938579", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bogota_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bogota_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bogota.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bogota_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-01T15:01:36-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bogus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named this bacteriophage 'Bogus' because we believed that phages weren't real. ", "finder_name": "Zack Marshall and Michael Robinson", "found_city": "Denver", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "39.7325 N", "found_GPS_long": "104.913611 W", "found_year": 2017, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": null, "discovery_notes": "Collected from a home garden in Denver, Colorado by Zack Marshall on September 4th, 2017 at 2:42pm. The temperature was approximately 55 degrees celsius. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Circular, cloudy, \"halo\" morphologies. The plaque sizes are approximately 3.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bogus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bogus_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bogus_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-16T17:14:56-05:00", "date_modified": "2020-09-17T14:08:51-04:00" }, { "phage_name": "BoHanna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Samantha Hanna", "found_city": "Whitehall", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The phage was isolated from a backyard soil sample. This sample was slightly damp, found in an area exposed to the sunlight often. Conditions: The sample was obtained during the morning, around 6am. Temperature: cool, low 60’s", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "These plaques are generally 1-3mm in diameter and posses significant turbidity. Extremely difficult to see.\n\nClass: Siphoviridae\nHead: Icosahedral shaped capsid\nTail: Approximately 2-2.5x larger than the head.\n Very flexible, long, non-contractile\nBanding is extremely clear, can almost be counted.\nTails possess “knob-ends”\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-12-05T16:49:40-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Bohdi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We spelt Bodhi wrong, We enjoyed the mistake and kept with it", "finder_name": "Fall 2021 Biol 207 course, Christy Strong, Ph.D.", "found_city": "Las Vegas", "found_state": "NV", "found_country": "", "found_GPS_lat": "36.166389 N", "found_GPS_long": "115.043333 W", "found_year": 2022, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": null, "discovery_notes": "Sample received from Instructor.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small Clear Plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bohdi_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bohdi_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Bohdi_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-02T08:03:09-04:00", "date_modified": "2024-02-25T15:28:06-05:00" }, { "phage_name": "Bohe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Conor Reindl", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.815 N", "found_GPS_long": "92.09 W", "found_year": 2019, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bohe_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bohe_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bohe_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-11T07:19:46-05:00", "date_modified": "2020-09-17T14:11:20-04:00" }, { "phage_name": "Bohemian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage Bohemian because when we sent it off to be imaged under the Electron Microscope, the technician was only able to find a single phage on our grid, and almost gave up on finding it! However, they found our lone ranger, and the images of it came back very clear. It wanders around, killing mycobacterium smegmatis; a true bohemian.", "finder_name": "Corinne Chaplin & Christopher Dolce", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.9468 N", "found_GPS_long": "75.2071 E", "found_year": 2017, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": null, "discovery_notes": "The soil sample was taken from a garden. While purifying our phage, we found that it had a very low titer (1.01x10^8 for low volume lysate, 3.22x10^8 for high volume lysate). ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear in center, turbid at edges, ~1/10 cm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bohemian_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bohemian_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bohemian_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bohemian_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bohemian_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-12T21:40:23-05:00", "date_modified": "2020-09-17T14:07:59-04:00" }, { "phage_name": "BohemiusBradly", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after some of my old pets.", "finder_name": "Matthew Haughney", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States of America", "found_GPS_lat": "38.424563 N", "found_GPS_long": "78.86776 W", "found_year": 2021, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": false, "discovery_notes": "I found this phage from a dry, coarse dirt sample which was collected from my yard.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, clear spots are visible in undiluted samples. After rounds of dilution individual plaques a re visible.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "sp.", "strain_name": "ISAT203", "strain_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BohemiusBradly_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-20T14:51:07-04:00", "date_modified": "2024-02-25T15:28:17-05:00" }, { "phage_name": "BohRhapsody", "old_names": "PotofDeath", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The Bohemian Rhapsody movie came out recently.", "finder_name": "Amanda Bailey and Imeh Ndiokho", "found_city": "Frisco ", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.131389 N", "found_GPS_long": "96.736667 W", "found_year": 2018, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "39 degrees Fahrenheit.\r\nMorning at 8:39 am.\r\nFrom a flower pot of a dead plant.\r\nDry soil.\r\nNo digging.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear plaques\r\nNot uniform in size (small and medium plaques)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BohRhapsody_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BohRhapsody_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/BohRhapsody_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BohRhapsody_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BohRhapsody_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-19T10:11:31-05:00", "date_modified": "2020-09-17T14:10:16-04:00" }, { "phage_name": "BoiC", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joseph S. Ryan", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.648296 N", "found_GPS_long": "117.410470 W", "found_year": 2010, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Near Sacred Heart Medical Center. Forested undeveloped ground, dry to slightly moist soil, lots of dead organic material on the surface (pine needles, leaves).", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium size plaques, turbid edges, plaques frequently formed in pairs and chain-like patterns", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2010-11-29T17:35:30-05:00", "date_modified": "2017-09-20T13:27:39-04:00" }, { "phage_name": "Boiiii", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Boiiii came from an inside joke with one of my classmates and I.", "finder_name": "Kyle Brendan Cushman", "found_city": "Midland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.788333 N", "found_GPS_long": "86.105278 W", "found_year": 2014, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "The soil was collected on 8/23/14, the air temperature was 28.3 degrees Celcius, the soil came from right on the surface, the soil was dry, and the it was collected in an urban environment (on Hope College's campus).", "isolation_temperature": 32, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K1" }, "morphotype": "SIPHO", "plaque_notes": "The plaque gave a bull's eye pattern (darker on the inside and lighter on the outside). After 24 hours of incubation the plaque diameter was 2 mm, and after both 48 and 72 hours of incubation the plaque diamater was 5 mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-05-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 37, "finishing_reactions": 0, "genome_length": 59907, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boiiii_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boiiii_Minimal_Final_fmhQBpN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Boiiii_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Boiiii_CoverSheet.pdf", "submitted_annotation_date": "2021-09-03T10:39:16-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boiiii_flat_hclOpnn.txt", "qced_genbank_file_date": "2021-09-03T10:39:16-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OK310505", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boiiii.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-05T09:58:48-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BoilerPete", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My partner, Katie, and I are proud Purdue Boilermakers! ", "finder_name": "Barbara Ann McAnulty", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.420952 N", "found_GPS_long": "86.922418 W", "found_year": 2016, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, round, about 0.75cm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoilerPete_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/BoilerPete_EMPic", "digest_file": "https://phagesdb.org/media/digestPics/BoilerPete_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoilerPete_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-08T11:58:19-05:00", "date_modified": "2020-09-17T14:07:48-04:00" }, { "phage_name": "BoilerUp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nicholas Fields and Sarah Bell", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.420936 N", "found_GPS_long": "86.922464 W", "found_year": 2016, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "Phage was discovered on 9/8/16 at 3:45 PM. Depth in soil was approx. 6 cm. Soil was moist and near bushes. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Relatively large phage. Only one phage appeared on the plate. Lytic phage. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoilerUp_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoilerUp_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/BoilerUp_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BoilerUp_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-29T17:03:48-05:00", "date_modified": "2020-09-17T14:07:48-04:00" }, { "phage_name": "Boilgate", "old_names": "Biolgate", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Austin was under a mandatory boil-water notice. A water sample was taken from the sink of the student's home.", "finder_name": "Sophie Molinari", "found_city": "Austin", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "30.207747 N", "found_GPS_long": "97.79133 W", "found_year": 2018, "p_institution": { "institution_code": "ASTN", "institution_name": "Austin Community College Highland Campus", "institution_logo": "https://phagesdb.org/media/institutions/AustinCC.jpg", "institution_url": "https://www.austincc.edu/campuses/highland-campus/", "institution_city": "Austin", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Concentrated Enrichment Buffer was used to allow more volume of the the \"liquid\" sample to be used during the enrichment process.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K8" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-04-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 783, "finishing_reactions": 0, "genome_length": 57889, "gcpercent": "65.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGCGGCGGT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boilgate_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boilgate_Minimal_Final_gRtX4mh.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Boilgate_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Boilgate_CoverSheet.pdf", "submitted_annotation_date": "2021-05-17T12:53:28-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boilgate_flat.txt", "qced_genbank_file_date": "2021-05-17T12:53:28-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ274310", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Biolgate_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boilgate.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Boilgate_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-03-31T09:52:38-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boingus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is simply a playful name to add some fun to more serious research", "finder_name": "Nicole Pasterczyk", "found_city": "Sinking Spring", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.32962 N", "found_GPS_long": "76.01593 W", "found_year": 2022, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Found in vegetable garden soil in January 5 inches in the ground. The soil was frozen with organic matter.", "isolation_temperature": -5, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques ~1mm in diameter and slightly cloudy\r\n\r\n1 to 3.97 average head to tail ratio from EM images (1 to 4 rounded)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boingus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boingus_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boingus_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoingusPlaquePhoto.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BoingusEMphoto.jpg", "dnam_file": null, "date_added": "2022-04-06T23:34:49-04:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "BoJack", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Renee LeClaire", "found_city": "Charlton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.125703 N", "found_GPS_long": "71.98548 E", "found_year": 2017, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": null, "discovery_notes": "Leaf mulch pile above garden in an open area surrounded by woods\r\n\r\nLoamy soil from top few centimeters of flower bed just outside M. Buckholt's (Professor) door", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Slightly cloudy with smooth edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BoJack_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BoJack_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-10-16T08:04:48-04:00", "date_modified": "2020-09-17T14:09:08-04:00" }, { "phage_name": "BoJackson", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named the phage \"BoJackson\" because he is the greatest athlete of all time.", "finder_name": "Jake Lortz", "found_city": "Omaha", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "Found in wet soil beneath trees in the back yard of my home in West Omaha. Found about an inch under the surface level at about noon on September 7, 2015 when it was 78 degrees Fahrenheit outside.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaque across all webbed plates. The rings of phage or much smaller than my classmates. It is a lytic phage, creating the clear circles, they are just much smaller in size than I have seen across my peers. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-06T11:10:56-05:00", "date_modified": "2020-09-17T14:06:47-04:00" }, { "phage_name": "BoJangles", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "James Bryant and Riggs Olson", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.815833 N", "found_GPS_long": "92.105278 W", "found_year": 2020, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": null, "discovery_notes": "The College of St. Scholastica Greenhouse", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", 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"genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-21T14:03:25-04:00", "date_modified": "2025-04-04T11:37:25-04:00" }, { "phage_name": "Bolden", "old_names": "TomGola", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Tiara Bolden", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.039993 N", "found_GPS_long": "75.15654 W", "found_year": 2024, "p_institution": { "institution_code": "LASL", "institution_name": "La Salle University", "institution_logo": "https://phagesdb.org/media/institutions/la-salle-university.gif", "institution_url": "http://www.lasalle.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.039459", "institution_longitude": "-75.15517" }, "enriched_sample": false, "discovery_notes": "Swabbed basketball court at Tom Gola Arena.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage was found to be 100% identical to LaviMo, despite having been isolated in a different geographical area.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-26T10:41:22-04:00", "date_modified": "2024-10-08T10:20:09-04:00" }, { "phage_name": "BoldKnight", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Courtney Whitelock", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.160278 N", "found_GPS_long": "76.61722 W", "found_year": 2013, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-06-25T11:33:30-04:00", "date_modified": "2020-09-17T14:05:58-04:00" }, { "phage_name": "Boldy12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kendra Royer", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.962367 N", "found_GPS_long": "91.919385 W", "found_year": 2024, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": true, "discovery_notes": "My garden at my house.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boldy12_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boldy12_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T14:53:42-04:00", "date_modified": "2025-04-04T11:37:25-04:00" }, { "phage_name": "Bolks", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Found outside of my apartment on campus. The name of the apartment is Bolks.", "finder_name": "Kate Kralik", "found_city": "Orange City", "found_state": "IA", "found_country": "Sioux county", "found_GPS_lat": "43.00004 N", "found_GPS_long": "96.06051 W", "found_year": 2023, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "Found in top layer of soil on campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2mm circles with clear middle and ring along inside edge.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bolks_Plaque_CRj3JCp.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-19T11:18:33-04:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Bollie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The Phage was named after Henna's two dogs Bailey and Ollie. The names were combined into Bollie.", "finder_name": "Henna Dhamecha", "found_city": "Oxford", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.507222 N", "found_GPS_long": "84.727778 W", "found_year": 2021, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": null, "discovery_notes": "The Phage was discovered outside of Beechwoods Hall on Miami University's Campus. Specifically on the banks of the pond in between Beechwoods Hall and Cook Field.", "isolation_temperature": 93, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T11:27:34-04:00", "date_modified": "2022-03-16T11:02:39-04:00" }, { "phage_name": "Bologna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is a play on my own name and its connection with the meat company Oscar Meyer. ", "finder_name": "David Meier", "found_city": "Blacksburg", "found_state": "VA", "found_country": "", "found_GPS_lat": "37.24339 N", "found_GPS_long": "80.415 W", "found_year": 2015, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Sample was taken from moist soil in a shady area underneath some trees outside of my apartment. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques have a tendency to form a \"bulls-eye\" shape. They often vary in size but tend towards the smaller side and often take a few days to appear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bologna_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bologna_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bologna_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bologna_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bologna_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2015-11-09T10:07:11-05:00", "date_modified": "2020-09-17T14:06:24-04:00" }, { "phage_name": "BolognaSand", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Hopefully something not taken", "finder_name": "Elizabeth Dull", "found_city": "Richmond", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "37.7396 N", "found_GPS_long": "84.2965 W", "found_year": 2020, "p_institution": { "institution_code": "EKEN", "institution_name": "Eastern Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/EasternKentucky_uni_logo.png", "institution_url": "http://www.eku.edu/", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Next to greenhouse", "isolation_temperature": 55, "growth_notes": "", "pcluster": { "cluster": "DO", "temperate": false }, "psubcluster": { "subcluster": "A5" }, "morphotype": "MYO", "plaque_notes": "10-14mm halo plaques at 48 hrs", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "INDIANA", "facility_name": "The Center for Genomics and Bioinformatics, Indiana University", "contact_person": "", "shipping_address": "", "facility_website": "http://cgb.indiana.edu/" }, "seq_method": { "short_name": "Sanger", "method_name": "Sanger" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-23T08:18:51-04:00", "date_modified": "2020-04-23T08:18:51-04:00" }, { "phage_name": "Bolomz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joy Bolomope", "found_city": "Cedar Hill", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.596439 N", "found_GPS_long": "96.926046 W", "found_year": 2014, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Phage isolated during the UNT-HHMI Transitions Summer Workshop", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-12T23:55:25-05:00", "date_modified": "2020-09-17T14:09:23-04:00" }, { "phage_name": "Bolt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "After the second round of streaking our phage for isolation, we found one of the plates completely clear after just three days. This was an indication that our phage was extremely rampant. Taking this into account, we decided to name our phage \"Bolt,\" because it had grown so quickly.", "finder_name": "Morgan DeRuyter and Jordan Horner", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666449 N", "found_GPS_long": "117.241083 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found this particular phage in a flower bed next to a bush in the southwest corner of Hughes Hall at Gonzaga University. The soil was slightly wet and the outside temperature was 3.33 degrees Celsius. There were small amounts of snow on the day that we collected this soil sample. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This phage is temperate, so the color is cloudy whenever it grows on a plate. The size is not very big, but not too small.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bolt_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bolt_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bolt_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-03-20T10:56:36-04:00", "date_modified": "2020-09-17T14:06:07-04:00" }, { "phage_name": "Bolt007", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our team name was Phage on the Run so we decided to name our phage Bolt007 after the movie characters Bolt and James Bond, since they’re both spies on the run.", "finder_name": "Kelley Krug", "found_city": "Malibu", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.047777 N", "found_GPS_long": "118.578333 W", "found_year": 2021, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil setting: \r\nUrban, couple trees, a cactus, shrubs and brush, 40 ft from a mountainous road, sloped, northeast-facing\r\nDepth from which sample was taken: 12cm\r\nAir temperature: 30\r\n\r\nAL Quarter and Lab section: F21-1B\r\nInstructor: Amanda Freise; Ana Garcia Vedrenne\r\nTeaching Assistant: Ryan Ngo\r\nUndergraduate Assistant(s): Amanda Chai\r\n\r\nTeam #1 Name: Phage on the Run\r\nTeam #1 Members: Minehli Kamarzar, Kelley Krug, Maysaa Batteikh, Manar Abuwarda", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "FH", "temperate": null }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Halo plaques: clear with turbid ring on outside\r\n~1mm on average", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2108, "finishing_reactions": 0, "genome_length": 49798, "gcpercent": "69.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 78, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bolt007_CompleteNotes.txt", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bolt007_Minimal_Final_qrc0LZP.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bolt007_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bolt007_CoverSheet.pdf", "submitted_annotation_date": "2022-12-03T23:06:26-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bolt007.gbf", "qced_genbank_file_date": "2022-12-03T23:06:26-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP985600", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bolt007_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bolt007_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bolt007.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bolt007_Plaque_Thumb1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bolt007_EMPic_Thumb1.jpg", "dnam_file": null, "date_added": "2021-12-03T14:07:16-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bolton", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my last name.", "finder_name": "Quinn Bolton", "found_city": "Manchester", "found_state": "NH", "found_country": "United States of America", "found_GPS_lat": "43.082894 N", "found_GPS_long": "71.517289 W", "found_year": 2024, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Found from garden soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small pinpoint plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-01-02T11:44:17-05:00", "date_modified": "2025-01-02T11:44:17-05:00" }, { "phage_name": "Bolts", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was inspired by various qualities of the phage including its robustness indicated by its stability at room temperature. Also, the rate of bacterial lysis made it difficult to culture 6 web plates; although, appropriate calculations were done, the entire plate would result clear rather than webbed. I felt that the various meanings of the term 'bolt' accurately encompassed the \"stubborn\" and \"speedy\" nature of this phage.", "finder_name": "Danielle Obando", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Soil sample collected August 27, 2015 around 9 AM, at Wyman Park. Sample was collected from underneath a bridge where the soil was not directly hit by the sun. The soil was clay-like.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The clear nature of the phage plaque indicates that the phage is in the lytic cycle. Plaque sizes tend to differ, ranging from smaller plaques to larger plaques. Additional streaking of plaques of various sizes was done in order to assure an isolated phage was obtained. The head to tail length was nearly one-to-one (tail length: 199.58; head length: 207.18). Higher-Titer Lysate is stable at room temperature.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-01T16:35:54-05:00", "date_modified": "2020-09-17T14:09:25-04:00" }, { "phage_name": "BoltTheCat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My cat's name is Bolt.", "finder_name": "Brianna Francis", "found_city": "Baltimore", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "Moist, and contained biological specimens (leaves, twigs).", "isolation_temperature": 50, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small, round, and relatively clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-29T12:40:50-04:00", "date_modified": "2022-04-29T12:40:50-04:00" }, { "phage_name": "Bolu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bolu Olagunju", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-28T23:02:44-04:00", "date_modified": "2020-09-17T14:10:05-04:00" }, { "phage_name": "Bolynn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is my favorite name for a girl and a boy combined.", "finder_name": "Stacia Hull", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.72724 N", "found_GPS_long": "96.616803 W", "found_year": 2019, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bolynn_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bolynn_EMPic.jpg", "dnam_file": null, "date_added": "2019-10-23T06:28:56-04:00", "date_modified": "2020-09-17T14:11:43-04:00" }, { "phage_name": "Bombadil", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Tom Bombadil from Lord of the Rings.", "finder_name": "Dr. Michael Buckholt", "found_city": "", "found_state": "", "found_country": "", "found_GPS_lat": "42.120573 N", "found_GPS_long": "71.98548 W", "found_year": 2020, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bombadil_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-08T16:08:43-04:00", "date_modified": "2021-10-08T16:08:43-04:00" }, { "phage_name": "Bombarda", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Harry Potter spell for exploding things.", "finder_name": "Claire Henson and Chantel Malin", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666947 N", "found_GPS_long": "117.402892 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from a flowerbed, and was wet when acquired. ", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1mm diameter clear, symmetrical plaques. It grows best at 25 degrees celsius, although it does show limited growth at 37 degrees celsius. \r\nWe believe it to be part of the K1 sub cluster because it did not infect a known K1 lysogen. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bombarda_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bombarda_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Bombarda_Digest.png", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Bombarda_VirtualDigest.png", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bombarda_Plaque_Thumb_QAJLEXH.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bombarda_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-03-27T10:11:06-04:00", "date_modified": "2020-09-17T14:06:54-04:00" }, { "phage_name": "Bombastic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Bombastic came to us when we were trying to find a name that was unique and interesting just like our phage research.", "finder_name": "Adrienne Safranski, Michelle Kwon", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66708 N", "found_GPS_long": "117.40176 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found in front of the Hughes building at Gonzaga university", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Type of phage: siphoviridae\r\nBoth phage heads: 54.54nm\r\nTop phage tail: 236.34nm, bottom phage tail: 218.16nm\r\nAverage tail length: 227.25nm\r\nTail to head ratio: 4.17", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bombastic_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ASMK_1.png", "em_thumb_file": "https://phagesdb.org/media/emPics/A4_Bombastic_02.png", "dnam_file": null, "date_added": "2025-02-25T11:22:07-05:00", "date_modified": "2025-05-08T10:08:16-04:00" }, { "phage_name": "BomberB1", "old_names": "Chunkie", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our top agar was continually so, so chunky- it looked like unsolidified jello. That's where her name came from!", "finder_name": "Annie Earthman, Jordan Dodson, Jack Kipperman", "found_city": "Boulder", "found_state": "CO", "found_country": "United States of America", "found_GPS_lat": "40.0086 N", "found_GPS_long": "105.2732 W", "found_year": 2023, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "On a crisp January afternoon, after a gueling class, Chunkie called to us from a bag of compost that she was trapped in. There was snow everywhere, but the compost bag was exposed. We freed her.", "isolation_temperature": 3, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Chunkie produces turbid plaques with clear centers.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BomberB1_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Sized_Plaque_copy.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Sized_EM.jpg", "dnam_file": null, "date_added": "2023-04-26T14:08:38-04:00", "date_modified": "2024-02-25T15:28:25-05:00" }, { "phage_name": "Bombitas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bombitas is a nickname my father gave me when I was a baby.", "finder_name": "Lidia Peralta", "found_city": "Rock Hill", "found_state": "SC", "found_country": "United States", "found_GPS_lat": "34.941325 N", "found_GPS_long": "81.034067 W", "found_year": 2022, "p_institution": { "institution_code": "WNTH", "institution_name": "Winthrop University", "institution_logo": "https://phagesdb.org/media/institutions/WinthropUniversity.jpg", "institution_url": "http://www.winthrop.edu/", "institution_city": "Rock Hill", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "34.939523", "institution_longitude": "-81.03154" }, "enriched_sample": true, "discovery_notes": "Collected under first small tree to the left. Area under tree had bed. When digging, found a lot of grubs, and there were a lot of roots. Many hornets and earwigs were also in the surrounding area. Soil sample had red clay in it and a good bit of organic matter and particles in it. For weather, it was foggy and cloudy, temperature was 22 degrees centigrade.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques tend to be small, about one millimeter in size. Plaques are numerous on plates, often clearing entire plates.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-12-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 327, "finishing_reactions": 0, "genome_length": 110129, "gcpercent": "60.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "ATCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 226, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bombitas_Minimal_Final_TguMdgs.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2023-06-19T12:14:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bombitas_flat_1DetIPN.txt", "qced_genbank_file_date": "2023-06-19T12:14:08-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR195048", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bombitas_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bombitas_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bombitas.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bombitas_Thumbnail_PhageDB.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-17T09:08:15-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bombola", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage Designator Name:2013OHSUBombolaTPope\r\nI choose Bombola for the name because it's a unique and interesting name.", "finder_name": "Tonisha Pope", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "Discovery Result's During each Procedure.\r\nIsolated Novel Phage: Direct Plating\r\nFrom the six samples taken no plaques appeared in the samples. Procedure had to be done over again to see if plaques would appear on plates. Also there was contamination, which was another factor in the procedure being done over again.\r\nPurified Phage: Spot Test\r\nChecked plates after being incubated overnight at 37 degrees Celsius and, discovered contamination with possible plaques. Due, to the high concentration of contamination within the plates this led to the procedure being done over again.\r\nPurified Phage: Plaque Streaking Protocol\r\nPlaques were contaminated and had to do procedure over again. Procedure was done three additional times in the plaque streaking experiment due to constant contamination. I finally achieved phage populations on plaques after the third round of streaking that I could isolate and purify to be able to move onto the next step during the next three additional rounds.\r\nPhage-Titer Assay\r\nPlates were initially contaminated. I did the procedure over again on October 18, 2013.\r\nPurified Phage: Final Plaque Purification\r\nFor my MTL procedure my calculations were 3.2*10^6 pfu/ml. Appearance of the plaques are medium sized with no sign of contamination within the plates.\r\nPhage Stocks: Empirical Testing\r\nWeb pattern is clear to proceed onto 10-plate phage infection.-3 web plate that was previously flooded with PB has enough solution and, a high enough concentration to proceed to get HTL solution from.\r\n10-Plate Phage Infection and Harvest\r\nFor the ten plate infection for the high-titer lysate I used -3 web-plates for my dilutions. My calculated titer for this procedure equated out to be 3.5*10^9. My concentration is high enough to move onto the isolation protocol.\r\nDNA Isolation\r\nMy results for DNA isolation are that the concentration of my DNA equated out to be 67.1pfu/ml.\r\nDigest\r\nThere is DNA present on my phage genomic DNA photograph but the bands somewhat did not separate and appear smeared.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of my phage was 1 mm. The size of my plaques were medium and fairly consistent throughout the entire exsperiment.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-06T15:43:34-05:00", "date_modified": "2020-09-17T14:05:24-04:00" }, { "phage_name": "BomBom", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BomBom is easy to say.", "finder_name": "Esmeralda Mendoza and Rukaiya Abdullah", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.1848 N", "found_GPS_long": "72.3832 W", "found_year": null, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "was collected on the Smith College campus on 9/15/18 between 12noon and 1:00pm. Soil Sample G was collected on the grassy area of the bank of the Mill River past the water fall on the Smith Campus.\r\nApproximately 1cm deep.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-30T20:35:40-04:00", "date_modified": "2019-10-30T20:35:40-04:00" }, { "phage_name": "Bombshell", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A derivative of the word \"serendipity,\" this phage was named Bombshell because although many issues occurred during the process, we were still able to have relatively large plaques almost immediately and an exceptionally large amount of DNA.", "finder_name": "Megan Perez and Marisa Trosen", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.46759 N", "found_GPS_long": "94.72494 W", "found_year": 2016, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": true, "discovery_notes": "At approximately 2:22 PM, soil was gathered into a Ziploc bag with a plastic spoon. The sample was found approximately 1 meter from a short pineleaf tree on a sunny day in and area where it had rained two days prior. In order to gather the sample, a 5.08 centimeter hole was dug. Only about 0.75 g, less than the recommended 1 g, was obtained.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3736, "finishing_reactions": 0, "genome_length": 51372, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bombshell_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-07-05T20:22:01-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bombshell_flat.txt", "qced_genbank_file_date": "2020-07-05T20:22:01-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT723939", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bombshell_Plaque_p797x6S.jpg", "em_file": "https://phagesdb.org/media/emPics/Bombshell_EMPic_dfUl965.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bombshell.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bombshell_Plaque_Thumb_lFCh6oQ.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bombshell_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-25T21:46:38-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bomi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bomi (from 봄) means \"Spring\" in Korean, I picked this name as a way of saying ' to give life' for it is in spring that new life emerges.", "finder_name": "Brenely Rivera Rivera", "found_city": "Caguas", "found_state": "PR", "found_country": "Puerto Rico", "found_GPS_lat": "18.185278 N", "found_GPS_long": "66.040278 W", "found_year": 2022, "p_institution": { "institution_code": "UTRB", "institution_name": "Universidad Ana G. Mendez, Gurabo campus", "institution_logo": "https://phagesdb.org/media/institutions/uturabo.jpg", "institution_url": "", "institution_city": "Gurabo", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil was humid, and a bit sandy, it had a bit of vegetation, and the color was dark brown.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are circular and a bit fuggy (unclear) in the borders.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bomi_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-20T07:47:34-05:00", "date_modified": "2022-12-20T07:47:34-05:00" }, { "phage_name": "BonaeSpei", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Fatima Herrera and Jannath Aurfan", "found_city": "Detroit", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.41 N", "found_GPS_long": "83.14 W", "found_year": 2021, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BonaeSpei_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/BonaeSpei_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-01T13:12:26-05:00", "date_modified": "2024-02-25T15:28:10-05:00" }, { "phage_name": "BonaeVitae", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bonae Vitae: Latin for \"Good Life\" or \"Life is Good.\"\r\n\r\nNE's State Slogan is also, \"Nebraska... The good life.\"\r\n\r\nWhether or not viruses are living, they play a large part in our lives. Regardless, life itself is good.\r\n\r\nLatin just makes it fancy.", "finder_name": "Dan Novinski", "found_city": "Grand Island", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.890833 N", "found_GPS_long": "98.357778 W", "found_year": 2015, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "Found in sandy mud at the base of a creek next to a golf course.\r\ncreek was lower on water than usual\r\n3\" depth\r\n1860' elevation\r\n\r\ncollected 28Sept2015\r\nenriched 5Oct2015", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small and lytic.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-05-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1218, "finishing_reactions": 0, "genome_length": 17451, "gcpercent": "68.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 26, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BonaeVitae_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-03-07T16:16:28-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BonaeVitae.gbf", "qced_genbank_file_date": "2018-03-07T16:16:28-05:00", "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH045556", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BonaeVitae_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BonaeVitae_EMPic_eV9FybY.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BonaeVitae.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BonaeVitae_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BonaeVitae_EM_Pic_Thumb_W0ykfR4.jpg", "dnam_file": "https://phagesdb.org/media/dnam/BonaeVitae.dnam5", "date_added": "2015-11-06T11:10:35-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bonamassa", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named for Blues artist, Joe Bonamassa.", "finder_name": "Deborah Jacobs-Sera", "found_city": "N. Huntingdon", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.326389 N", "found_GPS_long": "79.677898 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Sample was taken from the same spot as Rosebush, Echild, and CrystalP.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A5" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-07-01", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 381, "finishing_reactions": 0, "genome_length": 51174, "gcpercent": "61.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGAGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonamassa_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-11-06T13:58:24-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bonamassa.gbf", "qced_genbank_file_date": "2021-11-06T13:58:24-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OL455889", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bonamassa.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-05-30T15:48:32-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bonanza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "named after the street found on", "finder_name": "Abby Carter, Peyton Zalewski, Austin Nettles", "found_city": "Keithville", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.361372 N", "found_GPS_long": "93.814381 W", "found_year": 2016, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "in an old garden", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CA", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small clear plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 166, "finishing_reactions": 0, "genome_length": 46932, "gcpercent": "58.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 66, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonanza_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonanza_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bonanza_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bonanza_CoverSheet.pdf", "submitted_annotation_date": "2017-05-15T12:11:28-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bonanza.gbf", "qced_genbank_file_date": "2017-07-24T13:38:04-04:00", "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF537628", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bonanza.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Bonanza.dnam5", "date_added": "2016-09-29T18:22:07-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BonBon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I names my phage \"BonBon\". It means candy in French. I named my phage after that because I think that phages look like lollipops and I liked the name as well.", "finder_name": "Mihir Kharate", "found_city": "Ames", "found_state": "IA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": false, "discovery_notes": "I got my soil sample from a flower bed near Memorial Union.\r\nThe depth of the sample was 4 inches from the surface and the ambient temperature was 53 degrees Fahrenheit. I performed direct Isolation with Plaque assay and found turbid (lysogenic) plaques. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques found were turbid and lacked defined boundaries. The plaques were around 4mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BonBon1.jpg", "dnam_file": null, "date_added": "2017-12-08T00:07:01-05:00", "date_modified": "2020-09-17T14:09:33-04:00" }, { "phage_name": "Bonbons", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it Bonbon because it was my favorite candy when I was younger.", "finder_name": "THERESA SEY", "found_city": "Williamsburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "I found this in the woods near the trails opposite of the Crim Dell.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-11T21:20:05-05:00", "date_modified": "2021-01-28T11:04:17-05:00" }, { "phage_name": "Bond", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Shan Gulamani", "found_city": "Hoover", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "33.336 N", "found_GPS_long": "86.886 W", "found_year": 2012, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-28T16:15:33-05:00", "date_modified": "2017-09-12T10:27:27-04:00" }, { "phage_name": "BondJamesBond", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It came from one of my dog's name", "finder_name": "Victoria Turner", "found_city": "North Grafton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.279772 N", "found_GPS_long": "71.859792 W", "found_year": 2023, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": null, "discovery_notes": "Found in a regular compost pile outside.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium-large clear plaques that often cluster together", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BondJamesBond_Plaque.pdf", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-13T11:10:31-04:00", "date_modified": "2023-10-13T11:10:31-04:00" }, { "phage_name": "BoneAppleTeeth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From discussion on a common saying in today's world", "finder_name": "Joshua Venable, Louis de Jong", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "47.66691 N", "found_GPS_long": "117.40459 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Weather when gathered was 63 degrees F, 69% humidity, .45\" of rain, and 29.91 inHg", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoneAppleTeeth_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BoneAppleTeeth_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/morph_thumbnail.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/TEM_thumbnail.png", "dnam_file": null, "date_added": "2023-11-09T12:22:01-05:00", "date_modified": "2024-10-08T10:20:06-04:00" }, { "phage_name": "BoneCarver", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name was inspired by a character in a fantasy book series", "finder_name": "Isabel Gonzaba and Rylee Widger", "found_city": "Stephenville", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "32.21326 N", "found_GPS_long": "98.22464 W", "found_year": 2023, "p_institution": { "institution_code": "TARL", "institution_name": "Tarleton State University", "institution_logo": "https://phagesdb.org/media/institutions/TarletonStateUniversity.png", "institution_url": "http://www.tarleton.edu", "institution_city": "Stephensville", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "32.216025", "institution_longitude": "-98.21594" }, "enriched_sample": false, "discovery_notes": "Collected from the corner of a backyard. Soil was moist from rainfall and unfertilized. Sample was taken from 1.5 inches into the ground. Weather was 21C.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, clear, slow to grow,", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoneCarver_Plaque.JPEG", "em_file": "https://phagesdb.org/media/emPics/BoneCarver_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_3313.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Screenshot_2023-11-15_9.25.29_AM.png", "dnam_file": null, "date_added": "2023-11-13T14:46:34-05:00", "date_modified": "2024-02-25T15:28:14-05:00" }, { "phage_name": "Boneham", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after 2004 \"Survivor\" contestant Rupert Boneham. This phage survived mass contamination of an enrichment so I figured it was appropriate to name it after a fan favorite on the television show where surviving is the means of winning.", "finder_name": "Bethany Lindsey", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444800 N", "found_GPS_long": "79.952700 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This phage was found on 1/28/16 in a flower bed outside of the Cathedral of Learning the University of Pittsburgh campus. No plants were currently growing within the bed. The temperature during discovery was 43 degrees celcius and had been cloudy the past 24 hours. There were minimal snow showers around the time of harvesting and there was no snow cover in the flowerbed.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS2" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are ~1mm in diameter and are clear.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-09-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1822, "finishing_reactions": 0, "genome_length": 77497, "gcpercent": "58.9", "end_type": "TREP", "repeat_length": 191, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 109, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boneham_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2017-10-25T22:00:53-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boneham_flat.txt", "qced_genbank_file_date": "2017-10-25T22:00:53-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG757155", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boneham_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Boneham_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Boneham_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boneham.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boneham_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boneham_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-02-09T14:56:34-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boneless", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Deb Hughes, Sean McCormick, & Britney Mavrenovic", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.421712 N", "found_GPS_long": "86.913956 W", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "3.5 inch deep soil\r\n\r\n\r\nsoil was not dry, but not moist. It was right in the middle, enough to clump together but easily crumbly. \r\n\r\n\r\nCollected in a garden area around Purdue biology labs, surrounded by flowers. Less than a foot away from a walking path. Less than 2 feet away from a tree as well.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boneless_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Boneless_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boneless_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boneless_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T07:40:16-05:00", "date_modified": "2020-09-17T14:08:45-04:00" }, { "phage_name": "Bones", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bones because grave where bones are, and i like the TV show", "finder_name": "Nathan DePoe", "found_city": "POLSON", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "47.688579 N", "found_GPS_long": "114.11619 W", "found_year": 2017, "p_institution": { "institution_code": "SAKO", "institution_name": "Salish Kootenai College", "institution_logo": "https://phagesdb.org/media/institutions/salish_kootenai_college.png", "institution_url": "https://www.skc.edu", "institution_city": "Pablo", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "i may have found my phage in a bird grave", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-03-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1556, "finishing_reactions": 0, "genome_length": 52528, "gcpercent": "63.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bones_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bones_Minimal_Final_9UXMqfH.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bones_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bones_CoverSheet.pdf", "submitted_annotation_date": "2018-10-19T11:07:39-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bones_final_flat.txt", "qced_genbank_file_date": "2018-10-19T11:07:39-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112532", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bones.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-01-24T08:19:45-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BonesMcCoy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Tristan Smith & Clinton Krysa", "found_city": "Radford", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.1333 N", "found_GPS_long": "80.5479 W", "found_year": 2018, "p_institution": { "institution_code": "RADF", "institution_name": "Radford University", "institution_logo": "https://phagesdb.org/media/institutions/RADF.png", "institution_url": "https://www.radford.edu/", "institution_city": "Radford", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA1" }, "morphotype": "SIPHO", "plaque_notes": "Small Clear plaque formations", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1465, "finishing_reactions": 0, "genome_length": 41797, "gcpercent": "63.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BonesMcCoy_CompleteNotes_W1bWuLh.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BonesMcCoy_Minimal_Final_URnT2Qg.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BonesMcCoy_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BonesMcCoy_CoverSheet.pdf", "submitted_annotation_date": "2019-05-17T11:23:37-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BonesMcCoy_flat.txt", "qced_genbank_file_date": "2019-05-17T11:23:37-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK967391", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BonesMcCoy_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/BonesMcCoy_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BonesMcCoy.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T20:25:57-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bonesquad", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BoneSquad is the name of Baylor Universities Trombone section.", "finder_name": "Allen Karstens", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.547 N", "found_GPS_long": "97.114 W", "found_year": 2013, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": false, "discovery_notes": "Found six inches below fresh top soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque demonstrated a clear Halo morphology, until highly concentrated, then regular morphologies appeared.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonesquad_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bonesquad_EMPic.JPG", "digest_file": "https://phagesdb.org/media/digestPics/Bonesquad_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonesquad_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bonesquad_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2013-12-11T16:36:08-05:00", "date_modified": "2020-09-17T14:05:19-04:00" }, { "phage_name": "Bongbong", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We originally named it BonBon but the name was unavailable. We though of Bong becasue it was similar and that was that.", "finder_name": "Rhiannon Wall and Pj Murphy", "found_city": "Niwot", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.10472 N", "found_GPS_long": "105.20809 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bongbong_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Bongbong_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Bongbong_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T10:38:26-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "BongeeNkosi", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "I named the phage BongeNkosi as play on my Boyfriend name and my name. Our names in full Bongekile Nkosinathi.", "finder_name": "Bongekile Ngobese", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.869826 S", "found_GPS_long": "30.981804 E", "found_year": 2017, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected by Bongekile Ngobese, I collected the sample in evening at around 6pm. In used hand gloves to scoop it up and i keep it in a small container for few hours before isolation.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques appear as small clear circular ,but after 2 days show the appearance of a big clear circular. After five days they become larger and cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-07-11T10:10:37-04:00", "date_modified": "2017-07-11T10:10:37-04:00" }, { "phage_name": "Bongo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Han Yuan and James Wherley", "found_city": "St Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.644208 N", "found_GPS_long": "90.314927 W", "found_year": 2009, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "Washington University Campus under a tree near basketball courts. Soil depth: 3cm. Temperature 24 degree Celsius.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "M", "temperate": true }, "psubcluster": { "subcluster": "M1" }, "morphotype": "SIPHO", "plaque_notes": "1mm/ clear/ Incubation 24-48 hours at 37 degrees Celsius.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-05-23", "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": 80228, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "ACCTCCTGCAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 132, "num_tRNAs": 20, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bongo_Minimal_Final_lzTdCD5.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-02-13T14:05:29-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bongo_flat_new2_G8qIT8z.txt", "qced_genbank_file_date": "2018-02-13T14:05:29-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JN699628", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bongo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bongo_EMPic_1.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bongo_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bongo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bongo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bongo_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Bongo_correctseq.dnam5", "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bongoofy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ben Bongutu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-10-06T09:53:29-04:00", "date_modified": "2017-09-28T16:41:24-04:00" }, { "phage_name": "Bongus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named in honor of a student’s dog, Angus. Angus was a hefty dog so he was given the nickname of Bongus by his owners.", "finder_name": "Sophia Pulido", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.05683 N", "found_GPS_long": "118.443697 W", "found_year": 2022, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Collected from moist soil taken 5cm deep at ambient temperature of 18.89 ℃\r\n\r\nAn enriched culture was prepared by combining 15 mL of soil with 25 mL of PYCA broth. The bacterial strains of A. sp., A. globiformis, A. sulfureus and A. atrocyaneus were then added in equal concentrations. The enriched culture was incubated at 30℃ for 48 hours with shaking. After filtering with a 0.22 µm filter, the sample was plated on PYCA plates with 2X PYCa soft agar using the standard pour plate method.\r\n\r\nTeam Members: Dominic Garza, Michelle Zorawik", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Halo plaques with a clear center and turbid margins. 2 mm diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "atrocyaneus", "strain_name": "NRRL B-2883", "strain_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bongus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bongus_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bongus_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-01T15:38:52-05:00", "date_modified": "2024-02-25T15:28:32-05:00" }, { "phage_name": "Bonino", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after Nick Bonino of the Pittsburgh Penguins ", "finder_name": "Johnathon Schiebel", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442456 N", "found_GPS_long": "79.95355 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected from a flower bed with a small tree also in it outside of Hillman Library. Soil was collected on May 9, 2016 at 7:25 am. Weather was sunny and 65 degrees Fahrenheit. Soil was dark brown and had some root and grass matter in it.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-09-01", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3272, "finishing_reactions": 0, "genome_length": 41534, "gcpercent": "63.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonino_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-02-04T21:17:03-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bonino.gbf", "qced_genbank_file_date": "2018-02-04T21:17:03-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG920061", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bonino_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bonino.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bonino_EM_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Bonino.dnam5", "date_added": "2016-06-11T09:09:57-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bonk", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bonk is a short, simplistic, and mildly amusing word that has been used more and more throughout the world and within my own life. As such, it felt right to name a phage after it.", "finder_name": "Connor Flick", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.989861 N", "found_GPS_long": "86.451028 W", "found_year": 2020, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Taken on: 8-23-2020, 2:00 p.m.\r\n\r\nDepth of soil: ~8cm\r\nTemperature: 82°F\r\nWeather: Sunny, without clouds.\r\nSoil Conditions: The sample was under a large amount of mulch, some of which was inadvertently collected with the sample. Generally soft, clumped together, and gave easily when dug into. Sample was moist, leaving moisture on my hand when examined. Texture felt analogous to a sponge or cake; firm but compressible.\r\n\r\nFound beside a Chili's; 268 Alumni Ave, Bowling Green, KY 42101\r\n\r\nThe phage was isolated through a series of serial dilutions of the enrichment, which ended at a 10^-6 dilution. The plaque formed on the 10^-6 dilution's plate was by itself and naturally purified. Purification was confirmed through a dilution of the plaque yielding no changes in morphology.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques of Bonk are clear circles without any noticeable turbidity inside or around the plaque. Plaques average 2.5mm but can range from 1.5 to 4mm depending on concentration. There has been no noticeable variation in the sizes or turbidity of the plaques since the purification of Bonk.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonk_Plaque_jq6bylI.jpg", "em_file": "https://phagesdb.org/media/emPics/Bonk_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Bonk_Digest_eR4rNDN.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonk_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bonk_EMPic_Thumb_K94ApJA.png", "dnam_file": null, "date_added": "2020-09-22T13:11:13-04:00", "date_modified": "2021-01-28T11:04:15-05:00" }, { "phage_name": "Bonkbeanz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my dog Beanz, who crashes into furniture when running around sometimes (hence the bonk part).", "finder_name": "Amy Yao", "found_city": "Los Angeles", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.021779 N", "found_GPS_long": "118.282119 W", "found_year": 2024, "p_institution": { "institution_code": "USOC", "institution_name": "University of Southern California", "institution_logo": "https://phagesdb.org/media/institutions/usc.png", "institution_url": "https://www.usc.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Sample from USC's EVK Dining Hall's back garden, dug up at the base of a plant. Soil was clay-like but loose enough. EVK is the best dining hall, btw.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques small were small but clear, some colonies were seen growing in the plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonkbeanz_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Bonkbeanz_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T11:50:38-05:00", "date_modified": "2025-04-04T11:37:20-04:00" }, { "phage_name": "BonneMaman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it BonneMaman because it's my favorite jam brand. Also, it means grandmother in french", "finder_name": "Claire Haase", "found_city": "Cullowhee", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "35.31025 N", "found_GPS_long": "83.18747 W", "found_year": 2021, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": true, "discovery_notes": "Soil sample from underwater at Cullowhee Creek", "isolation_temperature": 61, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1 mm small plaques. Turbid no halos.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BonneMaman_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BonneMaman_Digest_IATcZeR.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BonneMaman_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-18T12:35:31-05:00", "date_modified": "2025-08-28T09:49:00-04:00" }, { "phage_name": "Bonnet", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bhavya K and Favour Dele", "found_city": "", "found_state": "", "found_country": "", "found_GPS_lat": "38.98558 N", "found_GPS_long": "77.54957 W", "found_year": 2024, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": true, "discovery_notes": "Purified by Favour Dele", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Large plaques with haloes", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonnet_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bonnet_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T15:21:32-05:00", "date_modified": "2025-04-04T11:37:29-04:00" }, { "phage_name": "Bonnie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Sister Phage", "finder_name": "Janet and Aldo", "found_city": "Caldwell", "found_state": "ID", "found_country": "USA", "found_GPS_lat": "43.6 N", "found_GPS_long": "116.7 W", "found_year": 2014, "p_institution": { "institution_code": "CIDA", "institution_name": "College of Idaho", "institution_logo": "https://phagesdb.org/media/institutions/the-college-of-idaho.gif", "institution_url": "http://www.collegeofidaho.edu/", "institution_city": "Caldwell", "institution_state": "ID", "institution_country": "USA", "institution_latitude": "43.653834", "institution_longitude": "-116.6768" }, "enriched_sample": true, "discovery_notes": "Found near Boone Hall", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bonnie_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bonnie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-10-20T16:12:09-04:00", "date_modified": "2020-09-17T14:05:43-04:00" }, { "phage_name": "Bonnie2013", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Christine Peters", "found_city": "San Diego ", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.876831 N", "found_GPS_long": "117.241043 W", "found_year": 2013, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "I obtained my phage from soil under a tree, the soil was in a shaded area, and it felt moist but was not damp or wet to the touch. The soil was surrounded by a grassy area and was a couple of feet from a sidewalk with high foot traffic however the area where the soil actually was has very low foot traffic. The soil came from approximately 1 cm deep. The temperature of the air was 81 degrees Fahrenheit and the air was not humid. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were approximately 1-4mm in diameter. When first performing the plaque purification through the streaking method my plaques were smaller, being closer to 1-2mm and were clear. When I performed the 1 plate and 10 plate lysates however, my plaques changed and got bigger, being closer to 4mm and were haloed, resembling a bulls eye, they had a clear middle and a turbid circle surrounding the clear middle. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonnie2013_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bonnie2013_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonnie2013_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bonnie2013_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-11T15:20:04-05:00", "date_modified": "2020-09-17T14:05:18-04:00" }, { "phage_name": "Bonnieclyde", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Inspired off Bonnie & Clyde.", "finder_name": "Reniayh, Ashlyn, Alex", "found_city": "Roanoke", "found_state": "VA", "found_country": "", "found_GPS_lat": "37.23747 N", "found_GPS_long": "79.97194 W", "found_year": 2024, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": false, "discovery_notes": "The soil was artificial and arid.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The front yard of an apartment complex.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-22T10:31:10-05:00", "date_modified": "2025-04-04T11:37:22-04:00" }, { "phage_name": "BonnyBoy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BonnyBoy is a nickname for my dog Bono.", "finder_name": "Elena Breisler", "found_city": "Fairfax", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.827038 N", "found_GPS_long": "77.302851 E", "found_year": 2023, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was discovered in soil underneath a tree beneath several inches of mulch. It was 89 degrees F and very sunny when the sample was collected from the courtyard of Liberty Square on GMU's Fairfax campus.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BonnyBoy_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BonnyBoy_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-24T09:10:17-04:00", "date_modified": "2024-02-25T15:28:14-05:00" }, { "phage_name": "Bono", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because just like Bono, our phage is a legend.", "finder_name": "Julia G. and Shanti B.", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.008986 N", "found_GPS_long": "105.269542 W", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": null, "discovery_notes": "Found outside the lab building in the flower beds at the University of Colorado at Boulder.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate phage, cloudy and relatively small plaques with an average diameter of .45cm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bono_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bono_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Bono_Digest_BgFoOop.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bono_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-02-27T10:29:37-05:00", "date_modified": "2021-01-28T11:04:24-05:00" }, { "phage_name": "Bonobo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We were on a cat cafe website, and one of the cat's names was Bonobo.", "finder_name": "Heley Croke, Anjani Guda, Gemini Ediriweera", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.959236 N", "found_GPS_long": "75.188638 W", "found_year": 2019, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was taken from 5 inches underground at Summer/Winter Community Garden at Drexel University, Philadelphia. It was collected from a shady area near an abundance of plant life with dry, cool soil.", "isolation_temperature": 4, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque morphologies varied throughout the different rounds of purification. In round 2 of purification, the plaques were clear and consistent. By round 3 of purification, most of the plaques were faint, but some were still clear. The sizes of the plaques ranged from 0.5mm-1mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonobo_Plaque_Fud5wXC.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonobo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-14T15:26:36-05:00", "date_modified": "2020-09-17T14:11:27-04:00" }, { "phage_name": "Bonolo", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Bonolo Bonita Phinius", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.861257 S", "found_GPS_long": "30.998527 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was discovered from soil at a guest house I was staying at while attending the Mycobacterial Genetics course, Chelsea Villa Guest House. The soil was dark brown with lots of organic matter. \r\n\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonolo_Plaque_AGFIRKK.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonolo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bonolo_3.jpg", "dnam_file": null, "date_added": "2016-07-11T16:09:11-04:00", "date_modified": "2020-07-23T16:42:45-04:00" }, { "phage_name": "Bonque", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was just completely inspired by something my friend said.", "finder_name": "Angelina Martin", "found_city": "Cullowhee", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "35.31 N", "found_GPS_long": "83.18 W", "found_year": 2023, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": true, "discovery_notes": "This phage was found underneath the freshman parking walker lot.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "This phages morphology varies in size, and the plaques have halos.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NRRL B-24275", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonque_Plaque_k7qflZg.tif", "em_file": "https://phagesdb.org/media/emPics/Bonque_EMPic_3WWn1YO.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bonque_Digest_iMJOqN7.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonque_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-13T08:41:59-05:00", "date_modified": "2025-08-28T09:50:03-04:00" }, { "phage_name": "BonQuiQui", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Patrick Newcomer", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.25575 N", "found_GPS_long": "76.7076 W", "found_year": 2008, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Taken from a UMBC flower garden, 0.5 inches deep, 82°F, elevation 185', dry breeze", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bonquiqui_EM.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bonquiqui_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bonquiqui_EM_thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Bonquisha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Rule for a lady: Stay Classy!", "finder_name": "Jessica", "found_city": "Fairfax, VA", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.832587 N", "found_GPS_long": "77.307657 W", "found_year": 2016, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Mulch Sample\r\n88 F\r\nJuly 15th,2016\r\n12:00 pm\r\nLocation: Lecture Hall \r\nA soil sample was taken from near a lecture building on the main campus of GMU. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large round plaques with discrete boundaries.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonquisha_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonquisha_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-07-26T19:36:32-04:00", "date_modified": "2020-09-17T14:07:58-04:00" }, { "phage_name": "Bonray", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "John Brackett", "found_city": "Dahlonega", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.533056 N", "found_GPS_long": "83.985 W", "found_year": 2017, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfNorthGeorgia.jpg", "institution_url": "http://www.ung.edu/", "institution_city": "Dahlonega", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "34.527800", "institution_longitude": "-83.98442" }, "enriched_sample": true, "discovery_notes": "Found in well-established Urban garden bed with flowers and tree. There had been no recent rain and the temperature was 72 degrees Fahrenheit.The soil was fine and slightly damp. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Bonray, produces plaques that are consistent in all aspects except size. The varying in sizes may be due to rapid mutation of the phage. The largest plaques are roughly 1.7mm, the medium ones about .63mm and the smallest plaques are .19mm. The large size of some plaques and the smooth edges indicates my phage may be a rapid lysis mutant. The plaques are clear and there is almost no turbidity. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-12-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 493, "finishing_reactions": 0, "genome_length": 157364, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 236, "num_tRNAs": 33, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonray_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-20T09:25:35-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bonray.gbf", "qced_genbank_file_date": "2018-10-20T09:25:35-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112533", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonray_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Bonray_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bonray.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonray_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bonray_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Bonray.dnam5", "date_added": "2017-11-27T21:25:08-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bonsai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage, Bonsai, because surrounding the phage were beautiful green trees and we thought our name should be correlating to a certain type of tree which indicated its uniqueness to the environment since there are so many different phages in the world that have yet to be discovered.", "finder_name": "A. Bhatnagar, R. Chen, O. Srikanth, P. Muriel", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.39048 N", "found_GPS_long": "72.52262 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "This phage was located near a building, underneath a tree. There was sufficient soil, yet it contained some mulch and mud. In addition, there was sand, but we were able to collect mostly soil and through filtration, we were able to get rid of any excess minerals. There was also no water nearby.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques were mainly transparent, with round edges and approximately the same size (1 millimeter). Their biological properties include coming from the same species and population which helped us identify them as coming from one clonal population.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T11:07:16-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "Bonster", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my puppy, Bonnie. Her nickname is \"The Bonster\" so I decided to honor her by naming my phage after her.", "finder_name": "Mia Hermann", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666667 N", "found_GPS_long": "117.402778 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, clear, uniform plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonster_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonster_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BonsterTEM1.jpg", "dnam_file": null, "date_added": "2019-04-12T21:56:28-04:00", "date_modified": "2020-09-17T14:11:49-04:00" }, { "phage_name": "BontFonne", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after its discovery on the Fontbonne University campus", "finder_name": "Jason Yuan and John Nahon", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.4961 N", "found_GPS_long": "90.189515 W", "found_year": 2013, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K2" }, "morphotype": "", "plaque_notes": "5mm in diameter, completely clear", "lysogeny_notes": "Appears completely lytic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BontFonne_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BontFonne_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/BontFonne_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BontFonne_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BontFonne_EM_Thumb.png", "dnam_file": null, "date_added": "2013-10-18T11:02:59-04:00", "date_modified": "2015-04-29T14:32:01-04:00" }, { "phage_name": "Bonto", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Allison Hedges, Taylor Beam", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.7298 N", "found_GPS_long": "117.1817 W", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T13:49:48-05:00", "date_modified": "2023-12-07T13:49:48-05:00" }, { "phage_name": "Bonum", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "soil sample was the \"good\" stuff\r\nBonum means good in Latin", "finder_name": "Mohammed Laswad", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.3911 N", "found_GPS_long": "74.9868 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "soil collected from a garden on 8/22/20 on a sunny day by Mohammed Laswad\r\n\r\nPurified by Mohammaed Laswad, Madison Haver, Sacun Tang, and Ira Sharma.\r\n\r\nIsolated and characterized by Alaina Marsinetti, Caroline Webb, Lia Robben, and Claire Chuang.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CR", "temperate": false }, "psubcluster": { "subcluster": "CR2" }, "morphotype": "", "plaque_notes": "1 mm in size\r\nclear\r\nround\r\nno mesas", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 235, "finishing_reactions": 0, "genome_length": 64476, "gcpercent": "65.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGCCGCGTAC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bonum_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-05-24T14:16:49-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bonum_flat.txt", "qced_genbank_file_date": "2021-05-24T14:16:49-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ322010", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bonum_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bonum.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bonum_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-20T11:01:32-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BonusJonas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named this after Frankie Jonas.", "finder_name": "Grace Nickas and Dani Linscheid", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666944 N", "found_GPS_long": "117.403889 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We discovered this outside our lab building by a parking lot.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "They are large, clear, with clear borders.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BonusJonas_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BonusJonas_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BonusJonusPlaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/BonusJonas_EM.png", "dnam_file": null, "date_added": "2019-04-02T23:52:10-04:00", "date_modified": "2020-09-17T14:11:49-04:00" }, { "phage_name": "Bonuspoints", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sam Vallabhbhai, Leah Keller, Allie Satterly", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-08-26T10:53:28-04:00", "date_modified": "2020-09-17T14:05:49-04:00" }, { "phage_name": "Boo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Catherine Carroll and Janice Chan", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.42582 N", "found_GPS_long": "86.920208 E", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boo_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Boo_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-01T15:53:23-04:00", "date_modified": "2020-09-17T14:08:45-04:00" }, { "phage_name": "Boo329", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage is a childhood nickname and my birthday. ", "finder_name": "Bailey Caruso, Kaylee Edson", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.7317 N", "found_GPS_long": "117.1762 W", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-05-01T09:33:28-04:00", "date_modified": "2020-09-17T14:08:54-04:00" }, { "phage_name": "BooBerry", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kathryn Kenney", "found_city": "Worcester", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.28012 N", "found_GPS_long": "71.85988 W", "found_year": 2021, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T12:07:17-04:00", "date_modified": "2021-10-11T12:07:17-04:00" }, { "phage_name": "Boobimski", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage was chosen because it was a nickname my family and myself called my dog when she was a puppy. So I thought it would be a good idea to name my phage after my dog.", "finder_name": "Aidan Fretland", "found_city": "River Falls", "found_state": "WI", "found_country": "Unites States of America", "found_GPS_lat": "44.850759 N", "found_GPS_long": "92.618944 W", "found_year": 2021, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected 5 inches into the ground. The soil was very sandy and damp. Also the sample was collected within 5 feet of the Kinnikinic river", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage is very tiny in size and has no halos visible on the plaques. Also the phages are very cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boobimski_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boobimski_EMPic_rFrx1Ml.tif", "digest_file": "https://phagesdb.org/media/digestPics/Boobimski_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T12:41:36-04:00", "date_modified": "2022-03-16T11:02:17-04:00" }, { "phage_name": "BooBoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I simply named it after myself, due to a lack in creativity. Except then I asked my roommate what to name it instead. And he said \"BooBoo\".", "finder_name": "Bradley Kocak", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "The soil was dark brown and cool with a worm in it. The soil was collected five minutes before processed.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "BooBoo has two different types of plaque morphologies. Both types have clear centers, with a fuzzy halo that is approximately 1mm, however, these plaques differ in that one type will have a clear center that is at least 3mm in diameter while the other type is less than 2mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BooBoo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BooBoo_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/BooBoo_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BooBoo_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/BooBoo_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-10-08T05:48:10-04:00", "date_modified": "2020-07-27T16:21:50-04:00" }, { "phage_name": "Boochie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is the childhood nickname of the discoverer", "finder_name": "Julia Mouat", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.26291 N", "found_GPS_long": "70.57011 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Boochie was found in soil that was moderately moist, found on the edge of a forest. It had small wood chips and rocks. It is a moderately dark colored sample of soil. There has been a fairly small amount of rain lately, and hot temperatures. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are between 1mm and 2mm in diameter. There is no evidence of mixed morphology. They are transparent. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boochie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boochie_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Boochie_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boochie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boochie_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-10-07T11:02:10-04:00", "date_modified": "2020-07-27T16:24:21-04:00" }, { "phage_name": "Boof", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "75.2378 W", "found_year": 2021, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": null, "discovery_notes": "The soil sample was collected on Saint Joseph's University's campus in Philadelphia underneath a statue located in Barbelin Courtyard at 4:29 pm 2/15/21. . The sample was collected from a depth of 9cm and the condition of the soil was moist. The ambient temperature on the day of collection was 2.22 °C, the humidity was 73%, and the weather was cold and cloudy.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boof_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boof_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boof_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boof_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boof_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-03-31T19:06:52-04:00", "date_modified": "2021-05-25T13:14:25-04:00" }, { "phage_name": "Boofball", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combination of goofball and \"Boof\", which is a nickname for my dog Leo.", "finder_name": "Nikki Pillai", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.502778 N", "found_GPS_long": "31.608611 W", "found_year": 2023, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Found behind Adelbert Hall in the garden, near the statue of Dr. Oz.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Bullseye, clear inside surrounded by turbid outside", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Boofball_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-22T08:45:01-05:00", "date_modified": "2024-02-25T15:28:33-05:00" }, { "phage_name": "Boofo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Boof is a common term created by me that I used to describe something lame or basic. Boofo is a spin on the term boof.", "finder_name": "Mikayla Wong Diallo", "found_city": "Providence", "found_state": "RI", "found_country": "United States", "found_GPS_lat": "41.82897 N", "found_GPS_long": "71.40258 W", "found_year": 2024, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": null, "discovery_notes": "Found on the Brown University campus next to the biomed center.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-04T11:54:16-05:00", "date_modified": "2024-12-04T11:54:16-05:00" }, { "phage_name": "Boog", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Paige Andrusko (and Lynn Gedeon)", "found_city": "Montreal", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.499444 N", "found_GPS_long": "73.571083 W", "found_year": 2024, "p_institution": { "institution_code": "MCGL", "institution_name": "McGill University", "institution_logo": "https://phagesdb.org/media/institutions/mcgill2.jpg", "institution_url": "https://www.mcgill.ca/", "institution_city": "Montreal", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 26, "growth_notes": "", "pcluster": { "cluster": "AW", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "- circular\r\n- undulated margins\r\n- turbid", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3146, "finishing_reactions": 0, "genome_length": 54259, "gcpercent": "51.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGACCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boog_CompleteNotes.doc", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boog_Minimal_Final_GtVfOP8.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Boog_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Boog_CoverSheet.docx", "submitted_annotation_date": "2025-08-31T08:03:01-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boog_flat_TAED3vX.txt", "qced_genbank_file_date": "2025-08-31T08:03:01-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PX315708", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Boog_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boog.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-25T11:24:37-05:00", "date_modified": "2025-09-15T14:15:55-04:00" }, { "phage_name": "Boogaloo", "old_names": "MLG360NoScope", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Unfortunately, we don't accept names that are based on admittedly cool maneuvers in which game-players perform a full rotation then eliminate a target in some cases from an impressive distance. As a general rule.\" -PhagesDB.org\r\n\r\nUnwritten naming rules = funny emails", "finder_name": "Ellie Jones & Kurt Lamon", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667076 N", "found_GPS_long": "117.402977 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We discovered a lytic form of this phage from enriched soil half an inch below the surface of the topsoil in a flower bed. We did not take directly from the top as it seemed dried out. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/MLG360NoScope_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Boogaloo_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boogaloo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boogaloo_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-12-04T14:25:37-05:00", "date_modified": "2020-09-17T14:06:54-04:00" }, { "phage_name": "Booger", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This page is like my little booger. It was a pain sometimes but still my baby phage. ", "finder_name": "Monica Villarreal", "found_city": "Austin", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "30.376 N", "found_GPS_long": "97.652 W", "found_year": 2016, "p_institution": { "institution_code": "ASTN", "institution_name": "Austin Community College Highland Campus", "institution_logo": "https://phagesdb.org/media/institutions/AustinCC.jpg", "institution_url": "https://www.austincc.edu/campuses/highland-campus/", "institution_city": "Austin", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Phage was discovered in flower bed under tree. Soil was damp. Sample depth of 3inches. Ambient Temperature of 89 Degrees F. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small plaque. Circular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-10T15:14:37-05:00", "date_modified": "2020-09-17T14:07:13-04:00" }, { "phage_name": "Boogeyman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lanya Brown", "found_city": "Rayville", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.4506 N", "found_GPS_long": "91.78709 W", "found_year": 2009, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "From damp soil, depth 2.5cm, collected from the bank of a swamp", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "lysogenic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/boogeyman_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/boogeyman_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/boogeyman_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/boogeyman_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/boogeyman_EM_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Boogie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kenneth Huang", "found_city": "Corvallis", "found_state": "OR", "found_country": "USA", "found_GPS_lat": "44.56762 N", "found_GPS_long": "123.28212 W", "found_year": 2010, "p_institution": { "institution_code": "ORSU", "institution_name": "Oregon State University", "institution_logo": "https://phagesdb.org/media/institutions/OregonStateUniversity.jpg", "institution_url": "http://www.oregonstate.edu/", "institution_city": "Corvallis", "institution_state": "OR", "institution_country": "USA", "institution_latitude": "44.564006", "institution_longitude": "-123.2794" }, "enriched_sample": true, "discovery_notes": "Temp: 70°F\r\nDepth: 3in.\r\nEnvironment: soil under the bush", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "average size of 3.5mm;\r\nsize variation due to the secondary infection;", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boogie_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Boogie_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boogie_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boogie_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boogie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-26T13:18:02-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Boogs", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Lily's cat.", "finder_name": "Lily Holtz", "found_city": "Duluth", "found_state": "MN", "found_country": "Unites States", "found_GPS_lat": "46.876 N", "found_GPS_long": "91.94 W", "found_year": 2022, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boogs_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boogs_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boogs_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boogs_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2022-11-02T08:09:46-04:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "Boohoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "When first working with the sample we were concerned with how it was being filtered. When it turned out to be our best phage we decided to call it Boohoo because of our stress.", "finder_name": "Leanna Vergis and Brea Smith", "found_city": "Newburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.5114 N", "found_GPS_long": "74.0139 W", "found_year": 2019, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": null, "discovery_notes": "It was a sunny day. The soil was dark and moist. The soil was taken from behind the library.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A15" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "Patch assay and phage release assay indicate this is a lysogen.", "seq_finished": true, "date_finished": "2021-01-25", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 136, "finishing_reactions": 0, "genome_length": 52178, "gcpercent": "61.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boohoo_Minimal_Final_OKShQUu.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-07-27T10:23:23-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boohoo_Flat_i4HEzY4.txt", "qced_genbank_file_date": "2021-07-27T10:23:23-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ681508", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boohoo_Plaque_zIbCwg3.jpg", "em_file": "https://phagesdb.org/media/emPics/Boohoo_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Boohoo_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boohoo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boohoo_Plaque_zIbCwg3_uuVFMUh.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boohoo_EMPic.jpg", "dnam_file": null, "date_added": "2019-10-24T11:42:09-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BookieBear", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hongying Chen and Liam Riley", "found_city": "Pullman", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "There was heavy downpour on the day that the sample was found. The soil was completely saturated with water and was quite heavy when collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T13:53:14-05:00", "date_modified": "2023-12-07T13:53:14-05:00" }, { "phage_name": "Bookku", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bookku means shy in Korean. After two attempts I could not obtain any EM photos.", "finder_name": "Jina Lee", "found_city": "La Jolla", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "32.878457 N", "found_GPS_long": "117.242608 W", "found_year": 2019, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": null, "discovery_notes": "Discovered underneath the sunflower plants in John Muir College's garden.\r\nSoil was collected from 3~5 cm under surface.\r\n22 degrees celsius,1:30 pm.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage formed plaques 5-6 mm in diameter. Plaques resembled a halo, with a circle of clearing in the center, an opaque ring, and another clear ring outside. Formed clearer plaques after 5-7 days than 2-3.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-09T21:59:12-05:00", "date_modified": "2019-12-09T21:59:12-05:00" }, { "phage_name": "BookLover", "old_names": "BookLover", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name came from the fact that my soil sample was taken from a spot by a tree that was right outside of the local library.", "finder_name": "Aubrey Morse", "found_city": "Bowling Green, Ky", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.989927 N", "found_GPS_long": "86.445596 W", "found_year": 2021, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "To isolate the phage and make sure it was only one type I completed 4 serial dilutions. This resulted in the last dilutions results having the same morphology to the plaques.\r\n\r\nThe soil that the sample was taken from was a spot of soil that was damp from previous rain that day. The temperature at the time it was taken was 69 degrees F. The time of day was 6:44 P.M, with cloudy weather and there were no animals seen around the site.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The morphology of this phage is turbid and around 0.5cm in diameter(5mm).", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BookLover_Plaque_G0p3q9s.jpg", "em_file": "https://phagesdb.org/media/emPics/BookLover_EMPic_kIxLzSP.PNG", "digest_file": "https://phagesdb.org/media/digestPics/BookLover_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/phagedb_picture.3.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/004.jpg", "dnam_file": null, "date_added": "2021-10-04T15:22:12-04:00", "date_modified": "2022-03-16T11:02:05-04:00" }, { "phage_name": "BookWorm", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Found outside of half priced books", "finder_name": "Amanda Gomez & Taylor Ojeda", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.709547 N", "found_GPS_long": "97.376694 E", "found_year": 2017, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Soil was moist and had an earthy scent, beneath a tree.", "isolation_temperature": 33, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, clear plaques are presented. Has a lytic cycle. 4mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BookWorm_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BookWorm_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/BookWorm_Digest.docx", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BookWorm_EMPic_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-13T16:38:25-05:00", "date_modified": "2020-09-17T14:09:26-04:00" }, { "phage_name": "BookWyrm", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Found near library, hence the name book wyrm", "finder_name": "Patrick McKinney and Jose Garcia", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.763878 N", "found_GPS_long": "97.407912 W", "found_year": 2014, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-24T16:23:37-05:00", "date_modified": "2020-09-17T14:05:37-04:00" }, { "phage_name": "Boom99", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brooke Burks", "found_city": "Washington ", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": 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"vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-11T11:08:00-04:00", "date_modified": "2017-09-24T10:22:30-04:00" }, { "phage_name": "Boomblast", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joel Wilkinson", "found_city": "District of Columbia", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "38.921481 N", "found_GPS_long": "77.019648 W", "found_year": 2019, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", 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"http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoomBoom_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoomBoom_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BoomBoom_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2017-11-25T06:44:02-05:00", "date_modified": "2020-09-17T14:08:26-04:00" }, { "phage_name": "BoomCrackaPop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and 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"submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-12T21:24:28-05:00", "date_modified": "2020-09-17T14:07:59-04:00" }, { "phage_name": "Boomer", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Manisha Patel", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444259 N", "found_GPS_long": "79.953213 W", "found_year": 2005, "p_institution": { "institution_code": "PITT", "institution_name": 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"verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "EU816590", "refseq_accession": "NC_011054", "plaque_file": "https://phagesdb.org/media/plaquePics/Boomer_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boomer.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Restriction_Map_of_Mycobacterium_phage_Boomera.jpg", "fasta_file": "https://phagesdb.org/media/fastas/Boomer.fasta", "plaque_thumb_file": 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Isolated by Gradyn Kershner", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Boomer153_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Boomer153_EMPic.jpg", "dnam_file": null, "date_added": "2018-05-15T05:11:15-04:00", "date_modified": "2020-09-17T14:11:44-04:00" }, { "phage_name": "Boomer224", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Pet name", "finder_name": "Nicole Knezevic", "found_city": "Wayne", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.951679 N", "found_GPS_long": "74.272344 W", "found_year": 2016, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "Found in a suburban area near pipes", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Boomer224_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Boomer224_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-06-07T11:03:10-04:00", "date_modified": "2020-09-17T14:07:49-04:00" }, { "phage_name": "Boomerang", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Rebecca Kelley", "found_city": "Hellertown", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.590277 N", "found_GPS_long": "75.416666 W", "found_year": 2010, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Soil sample was taken from outside just near a walking trail outside of Lost River Caverns. It was taken from underneath a rotting tree. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques appear after 24 hours. They are 2-3 mm in diameter and very turbid, often difficult to see. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boomerang_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Boomerang_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boomerang_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boomerang_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boomerang_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-30T09:14:32-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Boomerang350", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Tail has the distinct look of a boomerang.", "finder_name": "Dominick Henry and Dakota Palmer", "found_city": "Chesapeake ", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "36.64 N", "found_GPS_long": "76.53 W", "found_year": 2016, "p_institution": { "institution_code": "OLDU", "institution_name": "Old Dominion University", "institution_logo": "https://phagesdb.org/media/institutions/ODU_tag_fullcolor_logo.png", "institution_url": "https://www.odu.edu/", "institution_city": "Norfolk", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "36.886285", "institution_longitude": "-76.30442" }, "enriched_sample": true, "discovery_notes": "Dakota and Dominick were given an agar plate with isolated phage plaques which was collected and isolated by Kayla Culbertson in spring of 2016 in the Dismal Swamp area of Chesapeake, VA. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are turbid or temperate. They are 1 mm in diameter with a uniform round consistency.", "lysogeny_notes": "Temperate plaques most likely indicate that lysogens are being produced. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boomerang350_Plaque_RrExYPp.jpg", "em_file": "https://phagesdb.org/media/emPics/Boomerang350_EMPic_hKkLXnw.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boomerang350_Digest_VhWPMWM.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boomerang350_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boomerang350_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-30T23:36:10-04:00", "date_modified": "2020-09-17T14:07:31-04:00" }, { "phage_name": "BoomerJR", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jessica Yavner and Sofia Kling", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.640278 N", "found_GPS_long": "90.294722 W", "found_year": 2017, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "Sample F\r\nLocation: Forest Park - soil by row of trees across from art museum\r\nDepth of dig: 3 cm\r\nSoil Texture: wet and sandy\r\nOutside Temperature: 95 degrees Fahrenheit \r\n\r\n", "isolation_temperature": 35, "growth_notes": "", "pcluster": { "cluster": "BE", "temperate": false }, "psubcluster": { "subcluster": "BE2" }, "morphotype": "SIPHO", "plaque_notes": "Bull's eye plaques\r\nThe plaques are clear with a big area of cloudiness around them\r\nThe clear plaques are ~0.1 cm in diameter and the cloudy area around the plaque + the clear plaque has a diameter of ~0.3 cm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-09-20", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 72, "finishing_reactions": 0, "genome_length": 131220, "gcpercent": "49.2", "end_type": "TREP", "repeat_length": 12432, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 242, "num_tRNAs": 40, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BoomerJR_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-20T12:29:57-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BoomerJr_Flat.txt", "qced_genbank_file_date": "2018-12-20T12:29:57-05:00", "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK359351", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoomerJR_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/BoomerJR_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/BoomerJR_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BoomerJR.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoomerJR_Plaque_Thumb.jpeg.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BoomerJR_EMPic_THumb.jpeg", "dnam_file": null, "date_added": "2017-10-13T21:58:35-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BoomRoasted", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BoomRoasted is a reference to common catch phrase in our favorite TV show, The Office.", "finder_name": "Ellie McElligott and Jordan Moore", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666425 N", "found_GPS_long": "117.404512 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Isolation Temperature: 25˚C, room temperature", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-08-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6374, "finishing_reactions": 0, "genome_length": 17455, "gcpercent": "68.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BoomRoasted_Minimal_Final_jBSKo8U.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-05-23T01:24:21-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BoomRoasted_flat_yp5L01I.txt", "qced_genbank_file_date": "2021-05-23T01:24:21-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ322027", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoomRoasted_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoomRoasted_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BoomRoasted.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/54370920151__5ABA6DAB-8C52-49BB-9FF8-9C63D869F5D3.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Phage_Picture.png", "dnam_file": null, "date_added": "2018-04-19T09:59:03-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Dana DeSantis", "found_city": "Easton", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.661219 N", "found_GPS_long": "75.261047 W", "found_year": 2010, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The soil was from beneath a fern, approximately 1cm in depth. The area was shady and the soil was dry. The weather had been very dry in the months leading up to the collection of this sample.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "After 24 hours, 1mm in diameter and clear.\r\nAfter 48 hours, 4mm in diameter with a halo surrounding a clear center.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boon_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Boon_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boon_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boon_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-23T06:22:17-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Boone", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage the Boone phage because my last name is Boone. Also the nickname for Boone is good. I believed that it would give my phage good luck.", "finder_name": "Kristin Boone", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": null, "discovery_notes": "Soil was found by a tree. The area is watered every night.", "isolation_temperature": 31, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-04T16:49:21-05:00", "date_modified": "2020-09-17T14:06:26-04:00" }, { "phage_name": "Boonesok", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from combining the last names of the founders.", "finder_name": "Athena Sok and Christa Boone", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666202 N", "found_GPS_long": "117.404431 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The bacteriophage is a lytic phage and is 6 mm in width.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boonesok_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boonesok_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Boonesok_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boonesok_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boonesok_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-11-06T11:16:25-05:00", "date_modified": "2024-11-10T21:21:23-05:00" }, { "phage_name": "Booneville", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a town one of my friends is from in Arkansas.", "finder_name": "Emelia Towne", "found_city": "Machias", "found_state": "ME", "found_country": "United States", "found_GPS_lat": "44.716532 N", "found_GPS_long": "67.462937 W", "found_year": 2024, "p_institution": { "institution_code": "UMMA", "institution_name": "University of Maine, Machias", "institution_logo": "https://phagesdb.org/media/institutions/UMM-Clippers-Logo-web.jpg", "institution_url": "http://www.umm.maine.edu/", "institution_city": "Machias", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.711682", "institution_longitude": "-67.45805" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T13:39:57-05:00", "date_modified": "2024-12-06T13:39:57-05:00" }, { "phage_name": "Booneyardian", "old_names": "Booneyardium", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "N/A", "finder_name": "Chris Clopton", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "Taken from soil in my yard under the snow.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "N/A", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-05T21:32:16-04:00", "date_modified": "2020-09-17T14:11:44-04:00" }, { "phage_name": "Boop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It was the first name we could discover that was not taken. ", "finder_name": "Anna Gift and Lexy Roman", "found_city": "Indiana", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.62023 N", "found_GPS_long": "79.15272 W", "found_year": 2018, "p_institution": { "institution_code": "IUPA", "institution_name": "Indiana University of Pennsylvania", "institution_logo": "https://phagesdb.org/media/institutions/IndianaUniversityofPennsylvania.png", "institution_url": "http://www.iup.edu/", "institution_city": "Indiana", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.614314", "institution_longitude": "-79.16117" }, "enriched_sample": true, "discovery_notes": "The soil was collected at 12:30 pm.\r\nThe soil was taken from a rose garden outside of 603 Unit #1 in Crimson Court Townhouses. It was taken from the right, front corner near the sidewalk/door. The sample was dug out with a plastic spoon and placed into a Ziploc bag. The weather was sunny, partly cloudy, and humid at 84 degrees Fahrenheit. It was very moist, it had a deep brown color, it stuck together for the most part but had a tendency in some areas to crumble. There were worms found in the sample and it had stems and leaves found throughout. The soil was cool to the touch. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "As we progressed in the experiment, we found more and more plaques forming as we used a greater dilution. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-12T11:29:57-05:00", "date_modified": "2018-11-12T11:29:57-05:00" }, { "phage_name": "BoopleSnoot", "old_names": "", "program": null, "naming_notes": "My sister and I would always say “boop the snoot” when we would poke our pets’ noses, and once I slipped up and said “BoopleSnoot” it's been a running joke ever since. \r\n\r\nAlso, I couldn't stop laughing at the thought of a microbiologist trying to give a serious lecture while also having to say BoopleSnoot several times throughout", "finder_name": "Makenna Kayser", "found_city": "Holland", "found_state": "MI", "found_country": "United States of America", "found_GPS_lat": "48.029011 N", "found_GPS_long": "98.121223 E", "found_year": 2024, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "sample collected on August 27, 2024 at 8:20 pm (EST)\r\nTemperature: 80°F\r\nsoil was dry, soil was collected at a depth of 9.5 mm\r\nsoil was from under my families (dying) lily bed", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "Q", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "After ≈48 hours of incubation at 35°C the plaques are clear and have multiple sizes ranging from ≈1-3mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": "2024-12-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3628, "finishing_reactions": 0, "genome_length": 53371, "gcpercent": "67.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 14, "overhang_sequence": "TAAGCCGCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoopleSnoot_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BoopleSnoot_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoopleSnoot_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T09:04:26-04:00", "date_modified": "2025-08-06T10:52:52-04:00" }, { "phage_name": "Boopy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This is what I call my boyfriend and he made me name my phage this.", "finder_name": "Emma D'Alonzo", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446 N", "found_GPS_long": "79.9531 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was collected while it was raining outside. \r\nSoil was very wet and easy to scoop.\r\nSoil is dark brown and contains some small rocks and grass.\r\nSample was taken right near a stone wall.\r\nSample was taken right near a generally busy sidewalk.\r\nSample was collected when it was 62 degrees Fahrenheit outside.\r\nSample was collected at coordinates 40.4460 N, -79.9531 W.\r\nSample was collected at 11:54 AM.\r\nSample will be held in a backpack in an air-conditioned building for about 35 minutes until lab class starts.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DS", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are very small, about 0.5mm in diameter. They are clear throughout.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 40, "finishing_reactions": 0, "genome_length": 114220, "gcpercent": "53.2", "end_type": "TREP", "repeat_length": 1568, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 165, "num_tRNAs": 29, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boopy_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-05-03T14:23:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boopy_flat.txt", "qced_genbank_file_date": "2019-05-03T14:23:46-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK894436", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boopy_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Boopy_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Boopy_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boopy.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boopy_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boopy_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-09T11:27:11-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BooRadley", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Boo Radley from To Kill a Mockingbird.", "finder_name": "Alicia Ho", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.885262 N", "found_GPS_long": "117.24348 W", "found_year": 2015, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Soil collected from Ellie's Farm, under a leafy vegetable on September 29, 2015 at 9:07 p.m. Soil was moist and cool.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were clear, about 4 mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BooRadley_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BooRadley_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BooRadley_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BooRadley_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-02-02T15:15:27-05:00", "date_modified": "2020-07-29T14:07:26-04:00" }, { "phage_name": "BoosBoos", "old_names": "Afsaneh & Sima", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BoosBoos is a Persian word means kiss kiss . ", "finder_name": "", "found_city": "Plano", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.0506 N", "found_GPS_long": "96.6758 W", "found_year": 2018, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": null, "discovery_notes": "Plaques are cloudy with no turbidity. The borders are even. It appears as if there are multiple sizes of plaques. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoosBoos_Plaque_tAncPUf.png", "em_file": "https://phagesdb.org/media/emPics/BoosBoos_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/BoosBoos_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoosBoos_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/BoosBoos_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-08T21:57:11-05:00", "date_modified": "2020-09-17T14:10:16-04:00" }, { "phage_name": "BoosMushface", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was chosen to commemorate a member's late dog “Boo”, who was a dear friend. \"BoosMushface\" was chosen as a name because Boo was a boxer, a breed of dog known for its exceptionally mushy face.", "finder_name": "R. Umanoff, A. Sosa, R. Hauck, B. Borger-Gilligan", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.37854 N", "found_GPS_long": "72.47041 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Under the front porch of a building where the soil was less exposed to the weather.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques have a consistently \"bullseye\" morphology with a solid center and a cloudy \"ring\" on the outside. Plaques appear to be 5 mm or smaller in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-28T13:12:25-04:00", "date_modified": "2025-04-07T13:11:35-04:00" }, { "phage_name": "BoostSeason", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "One of my hobbies, which is racing cars.", "finder_name": "John Peroza", "found_city": "Vero Beach", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "27.622778 N", "found_GPS_long": "80.401611 W", "found_year": 2017, "p_institution": { "institution_code": "IRSC", "institution_name": "Indian River State College", "institution_logo": "https://phagesdb.org/media/institutions/logo_irsc2.png", "institution_url": "http://www.irsc.edu/", "institution_city": "Fort Pierce", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "27.423570", "institution_longitude": "-80.35789" }, "enriched_sample": true, "discovery_notes": "Soil collected next to a canal. Sample was a mix of mostly darkish dirt, with some sand. Sample was collected from under a flowerbed, surrounded by insects of many kinds.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K2" }, "morphotype": "SIPHO", "plaque_notes": "Plaques were circular, varying in size. Plaques were spread unequally throughout the plate, but with enough space between them for easy identification and quantification.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-12-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1367, "finishing_reactions": 0, "genome_length": 58078, "gcpercent": "68.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCGCGGCAT", "sequencing_notes": "sample contains mixed population, 16% Cluster L3 (not complete sequence)\r\nCluster K2 contains 12bp differences across genome, possibly 2 very similar phages", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 94, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BoostSeason_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-08-31T14:41:48-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BoostSeason_flat.txt", "qced_genbank_file_date": "2018-08-31T14:41:48-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH834601", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoostSeason_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BoostSeason_Digest.PNG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BoostSeason.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoostSeason_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-13T16:27:57-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Booth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The main character in the TV show Bones. He is the FBI agent.", "finder_name": "Kelsey Leach and Katie Olson", "found_city": "Moorhead", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "46.866987 N", "found_GPS_long": "96.76055 W", "found_year": 2018, "p_institution": { "institution_code": "MSUM", "institution_name": "Minnesota State University Moorhead", "institution_logo": "https://phagesdb.org/media/institutions/MSUM.png", "institution_url": "https://www.mnstate.edu/", "institution_city": "Moorhead", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil sample came from dry, hard soil on the surface near a tree. The ambient temperature was 12 degrees Celsius. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Medium-sized, turbid plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Booth_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Booth_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Booth_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Booth_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-28T13:38:28-05:00", "date_modified": "2020-07-02T09:59:13-04:00" }, { "phage_name": "BootheB", "old_names": "Boothe", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Cherica Quintyne-Best", "found_city": "Old Westbury", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.798 N", "found_GPS_long": "73.5721 W", "found_year": 2019, "p_institution": { "institution_code": "SUOW", "institution_name": "SUNY Old Westbury", "institution_logo": "https://phagesdb.org/media/institutions/SUNYOldWestbury.png", "institution_url": "https://www.oldwestbury.edu/", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.782786", "institution_longitude": "-73.57952" }, "enriched_sample": null, "discovery_notes": "Dirt was moist to the eye, but a little grainy and mixed with plant and tree matter. It was a cloudy 65 degree Fahrenheit", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BootheB_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BootheB_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-05T17:30:09-05:00", "date_modified": "2020-09-17T14:11:38-04:00" }, { "phage_name": "Boothill", "old_names": "Boothill", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Boothill is a name given to burial grounds of gunslingers \"who died with their boots on” in the Old West. When working with this bacteriophage, it would decimated the bacteria host each time, leaving only the remains.", "finder_name": "Felicity Hernandez", "found_city": "Riverside", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "33.90076 N", "found_GPS_long": "117.49401 W", "found_year": 2024, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": false, "discovery_notes": "The sample was collected from soil next to lots of bushes and vegetation. The soil was dark brown but not very moist. Sample was collected from just under the surface of the soil to about an inch deep, and there were many roots and other matter that was collected with it.", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, small, and circular plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NRRL B-24275", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-06-06T07:58:37-04:00", "date_modified": "2025-04-04T11:37:27-04:00" }, { "phage_name": "Booties", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after family cat.", "finder_name": "Katie Dale + Kieran Furlong", "found_city": "Ottawa", "found_state": "", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found at FieldTrip Farms near some fennel plants.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-4225", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Booties_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-08-09T07:17:13-04:00", "date_modified": "2025-04-04T11:37:33-04:00" }, { "phage_name": "Boots", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Boots is the name of my friend's new kitten.", "finder_name": "Kaylee Sullivan", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.22575 N", "found_GPS_long": "80.420389 W", "found_year": 2021, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Found outside in my dorm's front flower bed. The soil was slightly moist when sample was collected.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are very small, turbid, circular, and appear in large clusters. Very faint and one must be either very close to the plaque or must hold the plate up to light in order to see plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boots_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boots_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Boots_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T14:44:06-05:00", "date_modified": "2022-03-16T11:01:47-04:00" }, { "phage_name": "Boous", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaitlyn Kutzko", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442865 N", "found_GPS_long": "79.955577 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage Boous's individual plaque sizes tend to be about .5mm in diameter, but occasionally cluster into clearings about 2mm in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boous_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boous_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-28T12:08:47-04:00", "date_modified": "2020-09-17T14:10:30-04:00" }, { "phage_name": "Boov", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from a Disney Pixar movie called Home.", "finder_name": "Baldwin, Chowdhury, Reisner, Ye", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.38442 N", "found_GPS_long": "72.52948 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This sample was collected from outside Kennedy Hall.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage is around 4 to 5 mm wide. This phage is mostly clear with a halo surrounding the outside of it.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/boov_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/boov_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-11-03T07:57:21-04:00", "date_modified": "2024-08-12T14:44:47-04:00" }, { "phage_name": "BOOYA", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from my reaction at finding purified plaques after weeks of failed attempts to isolate the phage. \"BOO YA!\"", "finder_name": "Adam Darwiche", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.50411 N", "found_GPS_long": "84.736415 W", "found_year": 2013, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": null, "discovery_notes": "Found in the mulch underneath a small tree located in between the sidewalk and road in a busy area. Collected soon after a heavy rain, soil was damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-11-08T09:30:26-05:00", "date_modified": "2020-09-17T14:06:45-04:00" }, { "phage_name": "Bop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chris Evans", "found_city": "Argyle", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.098819 N", "found_GPS_long": "97.150297 E", "found_year": 2009, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Found at the bottom of a dried up pond", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "7mm in diameter, cloudy, 37 degrees Celsius", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bop_Temp_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bop_Temp_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bop_Temp_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bop_Temp_Plaque_Thumb_qLuBxvR.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bop_Temp_EMPic_Thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-08-07T12:02:54-04:00" }, { "phage_name": "Bopha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bopha is funny.", "finder_name": "Alexander Keck, Kateri Gebhart", "found_city": "Edmond", "found_state": "OK", "found_country": "USA", "found_GPS_lat": "35.656667 N", "found_GPS_long": "97.471111 W", "found_year": 2022, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Discovered in flower bed on the south side of the walkway north of broncho lake. Walkway extends from LAN to Environmental building. Dark wet soil in bed with shrubs.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are circular and have shaggy edges but have shown no regrowth in the center of any plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bopha_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-27T08:15:15-04:00", "date_modified": "2024-02-25T15:28:11-05:00" }, { "phage_name": "Bora", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It means purple in Korean.", "finder_name": "Lucie", "found_city": "Johannesburg", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "26.194718 S", "found_GPS_long": "28.032327 E", "found_year": 2023, "p_institution": { "institution_code": "WITS", "institution_name": "University of the Witwatersrand", "institution_logo": "https://phagesdb.org/media/institutions/WITS.png", "institution_url": "https://www.wits.ac.za/", "institution_city": "Johannesburg", "institution_state": "", "institution_country": "South Africa", "institution_latitude": "26.193191 S", "institution_longitude": "28.031503 E" }, "enriched_sample": false, "discovery_notes": "The soil sample was dug up in 27 March 2023 from a flower bed 5 cm below ground in a heavy downpour.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "O", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-09-29", "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1445, "finishing_reactions": 0, "genome_length": 71494, "gcpercent": "65.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "GTGT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 124, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bora_CompleteNotes.docx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bora_Minimal_Final_wJJFw3u.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bora_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bora_CoverSheet.docx", "submitted_annotation_date": "2024-05-11T22:29:47-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bora_minimal_1_flat.gbf", "qced_genbank_file_date": "2024-05-11T22:29:47-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP763600", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bora_EMPic_iMAF5FU.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bora.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bora_Plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bora_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2023-09-14T07:36:00-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bora7", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My idea for my phage name is Bora7. I got the name Bora from a korean word borahae, which was a phrase created by one of my favorite bands. Borahae directly translates to “ I purple you,” but it really means “I will trust and love you for a long time.” I think this is a beautiful meaning and if we find a new phage I trust and hope that it will be able to help others for a long time.", "finder_name": "Jessica Rocheleau", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.389671 N", "found_GPS_long": "72.53227 W", "found_year": 2021, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found next to a steam drain on campus, across the street from the Mullins Center.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Most plaques have a 0.2 mm width, smaller plaques have a 0.1 mm width. Shape of all plaques is circular and uniform.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-04-07T15:39:44-04:00", "date_modified": "2022-03-16T11:01:52-04:00" }, { "phage_name": "Borat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "John Dossick", "found_city": "Richmond", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sp.", "strain_name": "baron 5a", "strain_species": { "id": 25, "genus": "Streptomyces", "species_name": "sp.", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Steve Baron" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 25, "genus": "Streptomyces", "species_name": "sp.", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-18T21:25:21-05:00", "date_modified": "2019-11-18T21:25:21-05:00" }, { "phage_name": "Bordeaux", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Bordeaux comes from the street it was taken from, and also where I grew up. It reflects the temperate nature of the phage as just like the French wine town the street shares its name with, the phage took its time to reach a viable titer.", "finder_name": "Brendon Williams", "found_city": "Flower Mound", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.041985 N", "found_GPS_long": "97.172043 W", "found_year": 2018, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken August 26th, 2018, at 3:55PM. The soil was largely dry with organic matter such as grass roots and other buried materials such as twigs and acorns, with very few rocks. The air temperature was 96 degrees F. The sample was taken from about 2 feet away from a tree, and consisted of dark and clumpy soil.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BE", "temperate": false }, "psubcluster": { "subcluster": "BE2" }, "morphotype": "", "plaque_notes": "Plaques were typically very small and cloudy. They were typically an average of about 2 mm across.", "lysogeny_notes": "A spot test testing for lysogens had clear spots down to the 10^-7 dilution, lending evidence to a possibly negative conclusion.", "seq_finished": true, "date_finished": "2019-01-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 700, "finishing_reactions": 0, "genome_length": 131317, "gcpercent": "49.5", "end_type": "TREP", "repeat_length": 12579, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 238, "num_tRNAs": 44, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bordeaux_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-07-29T17:58:47-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bordeaux_flat.txt", "qced_genbank_file_date": "2019-07-29T17:58:47-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN369757", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bordeaux_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bordeaux_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Bordeaux_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bordeaux.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bordeaux_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bordeaux_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-31T14:22:52-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Borealis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaylene Tyndall", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.734494 N", "found_GPS_long": "117.163941 W", "found_year": 2011, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "Top soil, dry soil, near concrete. 73° at time of harvest. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Consistent plaques. 1.4mm diameter. Center of plaque was clear with turbid halo around it. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": 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"USA", "institution_latitude": "38.954649", "institution_longitude": "-95.25581" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": 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The soil had been watered recently. The soil was collected in a radius of approximately 5 cm, to a depth of about 4 cm. 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"institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Borger_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/borger_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/borger_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-12T10:55:39-04:00", "date_modified": "2024-02-25T15:28:26-05:00" }, { "phage_name": "Borgus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\r\n\r\n***Bulls-eye mutant present (Borgus-Bullseye)***", "finder_name": "Davis Elliott", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "36.986167 N", "found_GPS_long": "86.454417 W", "found_year": 2015, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "The sample from which the bacteriophage Borgus was isolated was gathered on September 1, 2015 at 12:43 pm. The temperature was 31°C, with 46% humidity. The soil was dry, but not dusty or hard. The site is surrounded by many plants and is the shade of several trees. The bacteriophage was isolated from within the top 7cm of soil.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Borgus grows in turbid circles, ranging from pin-points to a couple millimeters large. The plaques are often very hard to see without holding up to the light.", "lysogeny_notes": "The titre of the 10-plate lysate was 4.55 x 10^8 pfu/mL. Borgus was analyzed with a spectrophotometer in order to calculate the DNA concentration. The DNA concentration was recorded as 68.4 μg/mL. ", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Borgus_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Borgus_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Borgus_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Borgus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Borgus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-10T13:55:36-05:00", "date_modified": "2020-09-17T14:06:49-04:00" }, { "phage_name": "Boricua21", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I am from Puerto Rico. Boricua is just another word to say Puerto Rican.", "finder_name": "Gloriani Sánchez-Marrero", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446611 N", "found_GPS_long": "79.954136 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil sample was very dry. The day was sunny with a temperature of 73 deg F. Plants were found at least 5 feet away from the sample site.\r\nAfter filtering and incubating for 3 days, the plate was full of very tiny plaques.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are circular, with a diameter of < 1 mm. The plaque's edges are clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boricua21_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Boricua21_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boricua21_thumbnail.jpeg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-20T14:29:28-04:00", "date_modified": "2020-09-17T14:10:30-04:00" }, { "phage_name": "Boris", "old_names": "MBDTPh", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Stands for My Beautiful Dark Twisted Phage in recognition of Kanye West's most phenomenal album, although it also represents my conflicting emotions with regards to the phage.", "finder_name": "Brennan Wright", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-10-05T09:47:07-04:00", "date_modified": "2017-09-28T16:41:24-04:00" }, { "phage_name": "Borrowed", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named as a result of necessary phage acquisition.", "finder_name": "Jennifer G, Robert B., Isaiah L., J.D.P.", "found_city": "Roanoke", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "39.113059 N", "found_GPS_long": "80.1704 W", "found_year": 2024, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": true, "discovery_notes": "Obtained a sample from group NG.", "isolation_temperature": 4, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are jagged and loosely formed at 10^-4 and more neatly defined and countable at 10^-5.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-26T13:48:04-05:00", "date_modified": "2025-04-04T11:37:22-04:00" }, { "phage_name": "Borscht", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our love of Eastern European Cuisine.", "finder_name": "C. Schwartz, A. Deh, A. Pillai, O. Woghiren", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38897 N", "found_GPS_long": "72.52393 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Wet soil that was collected near greenery.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very cloudy, no presence of a bullseye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-28T12:15:19-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "Boruto", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "IT came from a popular cartoon", "finder_name": "Adejuwon Oyekenu", "found_city": "pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44476 N", "found_GPS_long": "79.957164 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "It was found on a plot of dirt with a few pieces of grass and some cigarette buds.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My phage demonstrates plaque morphologies anywhere from 3mm- .5mm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boruto_Plaque_Uo2QNi5.jpg", "em_file": "https://phagesdb.org/media/emPics/Boruto_EMPic_gwOREIy.png", "digest_file": "https://phagesdb.org/media/digestPics/Boruto_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boruto_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boruto_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-10-10T11:49:23-04:00", "date_modified": "2020-09-17T14:08:35-04:00" }, { "phage_name": "BoryCriar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a twist on a friend's name.", "finder_name": "Emmalea Chan/Darcie Caldwell/Robert West", "found_city": "Helena ", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "HELE", "institution_name": "Helena High School", "institution_logo": "https://phagesdb.org/media/institutions/helena.png", "institution_url": "http://www.helena.k12.mt.us/schools/highscho/helenahi/index.dhtm", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Multiple plaques of varied morphology arose on the original sample plate.\r\nSample was derived from local compost.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-03-19T13:12:26-04:00", "date_modified": "2020-09-17T14:06:30-04:00" }, { "phage_name": "Bosample4", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Robert Frazier", "found_city": "Hampden-Sydney", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "HMSD", "institution_name": "Hampden-Sydney College", "institution_logo": "https://phagesdb.org/media/institutions/hsc_seal.jpg", "institution_url": "http://www.hsc.edu/", "institution_city": "Hampden-Sydney", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.241291", "institution_longitude": "-78.46095" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-07-13T15:03:39-04:00", "date_modified": "2023-10-04T21:18:38-04:00" }, { "phage_name": "Bosco", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My mom had a dog named Bosco when she was younger. It popped into my mind and I thought it sounded like a good phage name.", "finder_name": "Logan Kuzo", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.434319 N", "found_GPS_long": "79.951815 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This phage was from my 11th soil sample.\r\n\r\nHere are the details:\r\n\r\nDate: Tuesday, February 14, 2017\r\nTime: 11:10 AM\r\nLocation: Oakland Square Historic District\r\nGPS coordinates: 40.434319, -79.951815\r\nWeather: Sunny; 39°F\r\nSurroundings: Rocks, small plants, leaves\r\nDepth: Surface - 3 inches deep\r\nSoil conditions: Damp, soft, fine\r\nStorage technique: Backpack for ~29.5 hours\r\n\r\nThe soil had small plants/weeds growing in it. Photos on Google Maps show that flowers are planted there in the summer.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "All plaques are clear. Plaques vary in size from very small to moderate-sized.", "lysogeny_notes": "When plating from a high-titer lysate, the lawn grows and decreases in intensity as the concentration of phage particles decreases, until there is a cleared plate and finally a webbed plate.\r\n\r\nPhage Bosco is confirmed to be a temperate phage through lysogen testing and can form stable lysogens.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bosco_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bosco_EMPic_cvnGo8f.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bosco_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bosco_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bosco_EM_thumb.jpg", "dnam_file": null, "date_added": "2017-03-08T21:59:24-05:00", "date_modified": "2020-09-17T14:08:29-04:00" }, { "phage_name": "Bosection6", "old_names": "Bosample6", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Robert Frazier", "found_city": "Hampden-Sydney", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.2 N", "found_GPS_long": "78.4 W", "found_year": 2023, "p_institution": { "institution_code": "HMSD", "institution_name": "Hampden-Sydney College", "institution_logo": "https://phagesdb.org/media/institutions/hsc_seal.jpg", "institution_url": "http://www.hsc.edu/", "institution_city": "Hampden-Sydney", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.241291", "institution_longitude": "-78.46095" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "N", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-09-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1244, "finishing_reactions": 0, "genome_length": 43412, "gcpercent": "66.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "CCCGCCGCAATGG", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 66, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bosection6_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bosection6_Minimal_Final_7uAnNwO.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bosection6_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bosection6_CoverSheet.pdf", "submitted_annotation_date": "2025-03-04T15:49:25-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bosection6_flat_18c7tYN.txt", "qced_genbank_file_date": "2025-03-04T15:49:25-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV251873", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bosample6_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bosample6_EMPic", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bosection6.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-07-24T07:27:07-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boselection8", "old_names": "Bosample8", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Robert Frazier", "found_city": "Hampden-Sydney", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "HMSD", "institution_name": "Hampden-Sydney College", "institution_logo": "https://phagesdb.org/media/institutions/hsc_seal.jpg", "institution_url": "http://www.hsc.edu/", "institution_city": "Hampden-Sydney", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.241291", "institution_longitude": "-78.46095" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bosample8_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bosample8_EMPic", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-07-19T09:34:09-04:00", "date_modified": "2023-10-04T21:18:33-04:00" }, { "phage_name": "Boshaft", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I had many problems isolating my phage. I named it \"mischievous\" in German.", "finder_name": "Sarah Hiner", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.507724 N", "found_GPS_long": "84.732431 W", "found_year": 2014, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": null, "discovery_notes": "Found in soil and decaying matter from a fallen tree within the woods near Hughes Laboratory.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small lytic plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-03T11:36:05-05:00", "date_modified": "2020-09-17T14:06:38-04:00" }, { "phage_name": "Boshua", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Dean Greene and Nick Milza", "found_city": "Beltsville", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.06501 N", "found_GPS_long": "76.932044 W", "found_year": 2021, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Collected by Joshua Le on 9/7/2021 near the base of a bush underneath a compost pile. The soil was moist and loamy. Outside temperature was 86°F and the weather was cloudy.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "TECTI", "plaque_notes": "~4mm, large uniformly turbid plaques throughout with rough edges after incubation for 36-48 Hours on incubation at 30°C on S. Mirabilis", "lysogeny_notes": "Phage appears to be virulent based on the lysogeny test and numerous plaque observations", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Grp8_S4_Boshua_Thumb.png", "dnam_file": null, "date_added": "2021-10-07T15:02:33-04:00", "date_modified": "2022-03-16T11:01:37-04:00" }, { "phage_name": "Bosie", "old_names": "", "program": null, "naming_notes": "Bosie originates from the nickname my younger sister had created for me.", "finder_name": "Josie Switzer", "found_city": "Storrs", "found_state": "CT", "found_country": "The United States", "found_GPS_lat": "41.81125 N", "found_GPS_long": "72.25361 W", "found_year": 2022, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found in the soil near a tree and a walkway with lots of step traffic. This spot is also near a pond but not wet from the pond.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Circled spots with darker centers, most are on the smaller scale. Not prominent until held to the light.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bosie_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Bosie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T14:36:16-05:00", "date_modified": "2024-02-25T15:28:05-05:00" }, { "phage_name": "Bosley", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katie Traub", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.43 N", "found_GPS_long": "117.1 W", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-20T14:10:10-04:00", "date_modified": "2020-09-17T14:08:54-04:00" }, { "phage_name": "Bosnia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was given as a nod to the country that I was born in, Bosnia and Herzegovina.", "finder_name": "Lejla Suljevic", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442102 N", "found_GPS_long": "79.965586 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The sample was collected in Pittsburgh, PA in front of a house on Robinson St. The soil was rather loose, dark, wet, and contained woodchips. When collected, the weather was 81°F at around 9:00am.", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "CZ", "temperate": true }, "psubcluster": { "subcluster": "CZ1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are consistently small, clear, and circular, indicating that there is only one type of phage. The plaques were less than 2 mm in length.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-02-25", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1772, "finishing_reactions": 0, "genome_length": 54546, "gcpercent": "66.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCTGGGGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 82, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bosnia_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-08-26T15:10:07-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bosnia_flat.txt", "qced_genbank_file_date": "2020-08-26T15:10:07-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT952844", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bosnia_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Bosnia_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Bosnia_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bosnia.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bosnia_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bosnia_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-09-26T12:26:55-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BosnianBeast", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I came up with the name because I wanted it to originate from my ethnicity, being Bosnian. I thought that adding \"beast\" at the end was humorous, especially since there is a Bosnian basketball player nicknamed the \"Bosnian Beast.\" Therefore, it overall resonates with positivity, hard work, and perseverance to me.", "finder_name": "Selma Kugic", "found_city": "Saint Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BosnianBeast_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/BosnianBeast_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-27T10:31:35-04:00", "date_modified": 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"date_added": "2017-10-06T11:26:42-04:00", "date_modified": "2020-09-17T14:08:19-04:00" }, { "phage_name": "Botched", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Botched, because of some errors in titrating at the beginning of the semester. This error was fixed for future processes. ", "finder_name": "Jon Farren, Erin Johnson", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.851846 N", "found_GPS_long": "92.618784 W", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Found on the banks of the Kinnickinnic River. It was moist, 68 degrees, and cloudy.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Small circular plaques. No Halos", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T19:49:30-05:00", "date_modified": "2020-09-17T14:07:25-04:00" }, { "phage_name": "BotCity", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Joke with friends", "finder_name": "Ella Hale, Tia Phaisan", "found_city": "Ashland", "found_state": "NE", "found_country": "United State of America", "found_GPS_lat": "41.042907 N", "found_GPS_long": "96.349744 W", "found_year": 2024, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "Found in backyard", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DN", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "consistently large plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 8070, "finishing_reactions": 0, "genome_length": 55060, "gcpercent": "63.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCGGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 106, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BotCity_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BotCity_Minimal_Final_DQmc9Vy.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BotCity_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BotCity_CoverSheet.pdf", "submitted_annotation_date": "2025-06-26T20:42:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BotCity.flat", "qced_genbank_file_date": "2025-06-26T20:42:42-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915805", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Poochina_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BotCity.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T09:14:52-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Botedock", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The location from where I got my phage is nicknamed “Botedock”", "finder_name": "Priya Shan", "found_city": "Williamsburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.27046 N", "found_GPS_long": "76.72245 W", "found_year": 2023, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "There were many different morphologies after enrichment plating before purification \r\nAll purifications made sense and the phage behaved as predicted\r\nI used 2 rounds of purification", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Circular and small capsid with one short tail \r\nAll plaques look relatively the same with same size", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Botedock_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Botedock_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T08:50:44-05:00", "date_modified": "2024-02-25T15:28:34-05:00" }, { "phage_name": "Bothways", "old_names": "Fivemph", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is derived from the TV show \"Psych\". One of the main character's tag lines is \"I've heard it both ways\" in response to a misspelling.", "finder_name": "Grace Davenport", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.4332 N", "found_GPS_long": "78.8603 W", "found_year": 2019, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "The phage was collected in a soil sample underneath a garden.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-26T15:10:18-04:00", "date_modified": "2024-02-25T15:28:15-05:00" }, { "phage_name": "Botwii", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because of the way it is", "finder_name": "Alexa Hokentad and Johnny Hoffmann", "found_city": "Evansville", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": false, "discovery_notes": "Soil taken from a flower pot", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Long, stiff tail with visible ribbing", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Botwii_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Botwii_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Botwii_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Botwii_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-30T12:29:01-05:00", "date_modified": "2020-09-17T14:08:11-04:00" }, { "phage_name": "Bouchard", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a certain podcast character.", "finder_name": "Corena Racine", "found_city": "Branson", "found_state": "MO", "found_country": "United States of America", "found_GPS_lat": "36.66271 N", "found_GPS_long": "93.26668 W", "found_year": 2024, "p_institution": { "institution_code": "EVGL", "institution_name": "Evangel University", "institution_logo": "https://phagesdb.org/media/institutions/evangel.png", "institution_url": "https://www.evangel.edu/", "institution_city": "Springfield", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found by the base of a tree. Came from the driest soil sample collected, and was fairly hard to collect as the ground was so dry.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AU", "temperate": false }, "psubcluster": { "subcluster": "AU2" }, "morphotype": "SIPHO", "plaque_notes": "Relatively small plaques around 1.6 mm and had a bit of a hazy center with a clear outer ring. Plaques tended to range a bit in size.", "lysogeny_notes": "Unsuccessful at lysogeny.", "seq_finished": true, "date_finished": "2025-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 8468, "finishing_reactions": 0, "genome_length": 57304, "gcpercent": "50.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bouchard_CompleteNotes.txt", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bouchard_Minimal_Final_ec3qWxI.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bouchard_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bouchard_CoverSheet.docx", "submitted_annotation_date": "2025-06-27T08:06:43-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bouchard_flat.txt", "qced_genbank_file_date": "2025-06-27T08:06:43-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV876923", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bouchard_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Bouchard_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bouchard.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T10:19:04-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boue", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "La Boue is French for dirt, mire, or mud.", "finder_name": "Jordyn Rockwell", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.8388 N", "found_GPS_long": "96.6474 W", "found_year": 2020, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "The sample was dug up with a plastic spoon from beside a sidewalk on Nebraska Wesleyan University's campus near a large tree.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Many times the plate was partially cleared. The plaques were incredibly small after day five of purification. The were very numerous throughout the experiment.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boue_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Boue_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boue_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boue_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-11-04T16:50:17-05:00", "date_modified": "2025-07-11T12:34:11-04:00" }, { "phage_name": "Bouffard", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Come form my mother maiden name ", "finder_name": "Megan Johnson", "found_city": "Manhattan ", "found_state": "KS", "found_country": "USA", "found_GPS_lat": "39.1927 N", "found_GPS_long": "96.5847 W", "found_year": 2018, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Found in back yard on top of the soil humity 93% temperature 74 f collected at 9:00 am central time ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "under 130000x phage is measured top from bottom 56.6nm, side to side 57.8, tail 231nm\r\n \r\nwith a phage measurement of 1.2mm with a bullseye morphology ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bouffard_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bouffard_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bouffard_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bouffard_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-09-27T13:00:13-04:00", "date_modified": "2020-09-17T14:09:58-04:00" }, { "phage_name": "BoujeeBanana", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was inspired by the rap group Migos and breakfast foods.", "finder_name": "Sebastian Carver and Sidney Harvey", "found_city": "Boulder", "found_state": "CO", "found_country": "United States of America", "found_GPS_lat": "40.009814 N", "found_GPS_long": "74.731235 E", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": false, "discovery_notes": "Collected on CU Boulder campus outside of Recreation center. It was cloudy and overcast when sample was collected. Soil was extracted from small patch of soil next to walking path.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are approximately 2mm in diameter and display small clear centers encircled by cloudy rings.", "lysogeny_notes": "Phage is temperate.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoujeeBanana_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoujeeBanana_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/BoujeeBanana_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoujeeBanana_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BoujeeBanana_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-04T10:25:08-05:00", "date_modified": "2021-01-28T11:04:24-05:00" }, { "phage_name": "Boujeejazzy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Righetti & Sofia Kerecelidze", "found_city": "", "found_state": "CO", "found_country": "United States of America", "found_GPS_lat": "40.005986 N", "found_GPS_long": "105.265979 W", "found_year": 2025, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected underneath a tree near Farrand Hall (University of Colorado Boulder).", "isolation_temperature": 10, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boujeejazzy_Plaque_965DTbZ.png", "em_file": "https://phagesdb.org/media/emPics/Boujeejazzy_EMPic_yAAcMYJ.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T15:04:59-04:00", "date_modified": "2025-04-30T11:21:40-04:00" }, { "phage_name": "Boulder", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "for our name we looked outside and saw a rock.", "finder_name": "Razan, Amanda Wong, Elaine Wu, Nina Viswanathan", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.381802 N", "found_GPS_long": "72.53115 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Sample was found near an excess steam vent, that was surrounded by grass and soil, the temperature of the soil was very warm when collected.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "bullseye, clear and round edges, 2.5mm and 5mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/boulder_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/boulder_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-04-02T13:24:47-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "BoulderBoy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "As the discovery notes might have pointed out, I found this species near/almost inside of a very large rock/boulder, so I felt this name was appropriate.", "finder_name": "Jamie Klendworth", "found_city": "Blacksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.206352 N", "found_GPS_long": "80.394187 W", "found_year": 2022, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "This phage species was discovered behind my apartment complex. The soil was taken from underneath a crevice in a very large rock. The temperature outside was 24.4°C, and I dug approximately 5cm down to collect the sample. \r\nIt was found on August 23rd, 2022 at 6:50 PM EST.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques tend to be medium-sized, hazy, and with halos surrounding them. The sizes of each plaque varies slightly, but not significantly.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoulderBoy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BoulderBoy_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/BoulderBoy_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-08T08:15:38-05:00", "date_modified": "2024-02-25T15:27:55-05:00" }, { "phage_name": "BoulderS5", "old_names": "LVLM5", "program": null, "naming_notes": "To be updated.", "finder_name": "Andrew Choi", "found_city": "Boulder City", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.030854 N", "found_GPS_long": "114.77275 W", "found_year": 2021, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 40, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2mm diameter with circular edges\r\nCenter zone of clearing", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BoulderS5_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-27T09:33:34-04:00", "date_modified": "2022-03-16T11:01:54-04:00" }, { "phage_name": "BouleyBill", "old_names": "Pyroli", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We wanted to choose a Pokemon name, because Pokemon is a universe we like and it can give original names. Pyroli (French version of Flareon) is the one we liked best.", "finder_name": "Lucie Boucard and Clement Almeida Monge", "found_city": "Dourdan", "found_state": "", "found_country": "France", "found_GPS_lat": "48.533211 N", "found_GPS_long": "2.007825 E", "found_year": 2023, "p_institution": { "institution_code": "UPSA", "institution_name": "University Paris-Saclay", "institution_logo": "https://phagesdb.org/media/institutions/saclay_kXr4wjL.png", "institution_url": "https://www.universite-paris-saclay.fr/", "institution_city": "Orsay, France", "institution_state": "", "institution_country": "France", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Phage was found in garden compost.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA4" }, "morphotype": "SIPHO", "plaque_notes": "Clear, 1 mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1359, "finishing_reactions": 0, "genome_length": 39215, "gcpercent": "64.2", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 55, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BouleyBill_CompleteNotes.zip", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BouleyBill_Minimal_Final_iszIBy1.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BouleyBill_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BouleyBill_CoverSheet.pdf", "submitted_annotation_date": "2024-07-04T11:42:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BouleyBill_flat.txt", "qced_genbank_file_date": "2024-07-04T11:42:40-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ114747", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Pyroli_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Pyroli_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BouleyBill.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BouleyBill_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BouleyBill_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-12-21T09:21:54-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BounceBack", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We had a few mishaps but our phage has \"bounced back\".", "finder_name": "Maya Krantz and Lauren May", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.65878 N", "found_GPS_long": "117.426046 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "A liquid mixture taken from a puddle on a grassy field.\r\nMixture appears to be clear and a yellow color.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": " clear, circular plaques with a 1mm diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BounceBack_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/BounceBack_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/BounceBack_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BounceBack_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BounceBack_EM.png", "dnam_file": null, "date_added": "2018-04-19T10:02:06-04:00", "date_modified": "2020-09-17T14:10:45-04:00" }, { "phage_name": "Bound2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the song Bound 2 by Kanye West, which both Kami and Jasper are fond of.", "finder_name": "Jasper Makowski and Kami Turner", "found_city": "Unity", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.59014 N", "found_GPS_long": "69.29069 W", "found_year": 2022, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": null, "discovery_notes": "Soil was taken from a flower bed from the Commonground Fair in Unity Maine.", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-14T08:38:09-04:00", "date_modified": "2024-02-25T15:28:07-05:00" }, { "phage_name": "Bouquet", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name is derived from the street that the phage was found (N. Bouquet)", "finder_name": "Albert Ku", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443167 N", "found_GPS_long": "79.95825 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Sample was collected in front of Frick Early Childhood Center entrance to the left of the walkway. Soil collected was from the top layer and the quality was fine and dry. Time collected was approximate 8:15 pm and at the time it was dark and cold. There was snow at the time but the area collected from had no snow present. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Two clear plaque morphologies that are clear smooth circles that range from 1/10th of a centimeter to 1/20th of a centimeter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bouquet_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Bouquet_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bouquet_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bouquet_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bouquet_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-02-07T17:18:03-05:00", "date_modified": "2020-09-17T14:08:29-04:00" }, { "phage_name": "BourbonZero", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Vitor Cunha", "found_city": "Hualien", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "24.08625 N", "found_GPS_long": "121.60896 E", "found_year": 2022, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L3" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-08-01", "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 405, "finishing_reactions": 0, "genome_length": 75531, "gcpercent": "59.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 128, "num_tRNAs": 10, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BourbonZero.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-25T15:04:53-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bourne", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bourne translates to \"one who lives near a stream.\"", "finder_name": "Brenna DeBellas", "found_city": "Blacksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.2281 N", "found_GPS_long": "80.427 W", "found_year": 2017, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected on 08/29/2017 on the Virginia Tech Campus by the Duck Pond across from Hahn Hall North from a run-off stream. Temperature was 21 °C, altitude was 2022.97 ft, and the sample was collected from a depth of 6.9 cm below the surface. Soil was very moist. \r\n\r\nTail length is roughly 142nm. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Formation of large, temperate plaques as the incubation temperature increases (42°C). Formation of polymorphic, lytic plaques as the incubation decreases (32°C).", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bourne_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bourne_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bourne_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bourne_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bourne_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2017-11-26T18:32:33-05:00", "date_modified": "2020-09-17T14:08:26-04:00" }, { "phage_name": "BoutTime", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "William Ross", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-31T20:30:30-04:00", "date_modified": "2020-09-17T14:08:19-04:00" }, { "phage_name": "Bova", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It came from the combination of our dogs names.", "finder_name": "Kendall Skeete Ridley, Winnie Dong, Anjana Manicka", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "39.9553 N", "found_GPS_long": "75.1839 W", "found_year": 2024, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Near the steps close to bulletin building in grass", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were varied in size, but they were quite small. The larger ones were towards the middle, while the smaller ones were towards the edge of the plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bova_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-02T08:47:36-05:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Bovely", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bovely is a combination of Bubbly and Lovely, due to the weak plaque formation throughout the semester.", "finder_name": "Arron Nguyen", "found_city": "Watauga", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.857739 N", "found_GPS_long": "97.284448 W", "found_year": 2017, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Soil was discovered in backyard garden. Very moist and hosted some bugs.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD1" }, "morphotype": "", "plaque_notes": "Plaques on average are 1 millimeter in diameter. They were clear.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-08", "seq_facility": { "short_name": "UNT", "facility_name": "University of North Texas", "contact_person": "Richard Hale/Lee Hughes", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": 49576, "gcpercent": "66.2", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGGGCAGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 73, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bovely_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-01-15T21:24:38-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bovely_flat.txt", "qced_genbank_file_date": "2019-01-15T21:24:38-05:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK433270", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bovely_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bovely_EMPic_enp7ZU5.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bovely.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bovely_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bovely_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-05-02T06:37:58-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bow88", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The plaques the phage formed were bulls eye shaped so we went with bow because of a bow and arrow that are used to hit a target and 88 was Javan's favorite number. ", "finder_name": "Alexis Terry and Javan Carter", "found_city": "Virginia Beach", "found_state": "VA", "found_country": "", "found_GPS_lat": "36.577472 N", "found_GPS_long": "76.029889 E", "found_year": 2015, "p_institution": { "institution_code": "OLDU", "institution_name": "Old Dominion University", "institution_logo": "https://phagesdb.org/media/institutions/ODU_tag_fullcolor_logo.png", "institution_url": "https://www.odu.edu/", "institution_city": "Norfolk", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "36.886285", "institution_longitude": "-76.30442" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were bull eyes ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bow88_EMPic.webarchive", "digest_file": "https://phagesdb.org/media/digestPics/Bow88_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-17T16:16:19-05:00", "date_modified": "2020-09-17T14:06:30-04:00" }, { "phage_name": "BowAndArrow", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named the phage BowAndArrow because it had a bullseye morphology.", "finder_name": "Team A", "found_city": "Oakland, Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44524 N", "found_GPS_long": "79.95376 W", "found_year": 2022, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This sample was taken from the lawn of the Cathedral of Learning.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of the phage was a bullseye and a little turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BowAndArrow_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG-3113_2.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-07T09:35:21-04:00", "date_modified": "2024-02-25T15:28:02-05:00" }, { "phage_name": "Bowden", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because I did the research to find the phage, I named it after myself.", "finder_name": "Stormie Bowden", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.210659 N", "found_GPS_long": "97.147261 W", "found_year": 2016, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", 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"https://phagesdb.org/media/annotation_submission/GenBankFiles/Bowden_flat.txt", "qced_genbank_file_date": "2019-01-08T08:55:25-05:00", "isolation_host": { "genus": "Streptomyces", "species": "xanthochromogenes", "strain_name": "NRRL B-5410", "strain_species": { "id": 53, "genus": "Streptomyces", "species_name": "xanthochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Streptomyces_xanthochromogenes" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 53, "genus": "Streptomyces", "species_name": "xanthochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Streptomyces_xanthochromogenes" }, 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"seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, 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{ "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-10T11:36:35-05:00", "date_modified": "2022-10-10T14:39:49-04:00" }, { "phage_name": "Bowser", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Bowser is a character in the Mario Bros. video game series.", "finder_name": "Matthew (Monty) Montgomery", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44826 N", "found_GPS_long": "79.94966 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DB", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-11-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1945, "finishing_reactions": 2, "genome_length": 46570, "gcpercent": "67.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "Read buildup separated by 10 bp coverage drop.", "overhang_length": 10, "overhang_sequence": "CGCCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU998235", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bowser_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Bowser_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bowser.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bowser_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bowser_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Bowser_LNf5L8z.dnam5", "date_added": "2015-11-02T14:24:38-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bowtie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the best kind of pasta. ", "finder_name": "Sara Misiukiewicz", "found_city": "Bethlehem", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.604604 N", "found_GPS_long": "75.374866 W", "found_year": 2017, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The soil sample was harvest from outside of the Dravo dorm at Lehigh University. It was 43°F outside and it was raining, so the soil was damp. The soil was extracted near a tree, and was under wet leaves. I dug into the ground about 1 inch with a stick. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A11" }, "morphotype": "SIPHO", "plaque_notes": "The plaque has a clear center and a turbid halo. At 24 hours the plaque is clear, but after 48 hours of incubation the turbid ring forms", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-06-29", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2948, "finishing_reactions": 0, "genome_length": 51202, "gcpercent": "63.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 95, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bowtie_Minimal_Final_mqgZWcT.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-02-12T12:42:45-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bowtie_flat_correct.txt", "qced_genbank_file_date": "2019-02-12T12:42:45-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK524511", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bowtie_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Bowtie_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bowtie_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bowtie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bowtie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bowtie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-04-20T14:15:30-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Boxer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "named after the best dog breed boxer.", "finder_name": "Jennifer Gomez", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.10199 N", "found_GPS_long": "74.96464 W", "found_year": 2024, "p_institution": { "institution_code": "LASL", "institution_name": "La Salle University", "institution_logo": "https://phagesdb.org/media/institutions/la-salle-university.gif", "institution_url": "http://www.lasalle.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.039459", "institution_longitude": "-75.15517" }, "enriched_sample": true, "discovery_notes": "I borrowed the phage from my seatmate Mia Harris", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "tiny and circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-18T07:41:08-04:00", "date_modified": "2024-06-12T12:40:41-04:00" }, { "phage_name": "BoxShop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"BoxShop\" comes from the Chicago city project where old train boxcars were turned into a collection of stores and restaurants. This project, \"Box Shops by Related\", was nearby the location of where this soil sample was taken.", "finder_name": "J Yonan", "found_city": "Chicago", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.883514 N", "found_GPS_long": "87.646452 W", "found_year": 2019, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "-Found alongside Kennedy Expressway in patch of soil from bush growing out of concrete\r\n\r\n-Grass bordered the area, however the location of soil was elevated due to concrete wall\r\n\r\n-Soil was wet as a result of rain from the night before\r\n\r\n-Soil was home to worms, grubs, and ants, as well as several flourishing bushes", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "-Small, ~0.3mm-0.6mm diameter plaques\r\n-Have cloudy \"ring\" around some sites", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoxShop_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/BoxShop_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BoxShop_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BoxShop_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-08T22:32:50-04:00", "date_modified": "2020-09-17T14:11:34-04:00" }, { "phage_name": "Boxx", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "John saw a box and thought that was a perfect name.", "finder_name": "Brewer Slack and John Keating", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66715 N", "found_GPS_long": "117.40442 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil sample was found under a tree on Gonzaga University's campus in shady, moist conditions.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were consistently around 3 mm in diameter and clear in the whole plaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boxx_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Boxx_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boxx_Plaque_Thumb_31oOn50.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boxx_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-17T14:46:06-05:00", "date_modified": "2020-09-17T14:10:45-04:00" }, { "phage_name": "BoyBye", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named it BoyBye because our friend always says that and phage makes bacteria disappear.", "finder_name": "Brayden Brosz and Peyton Arndt", "found_city": "Moorhead", "found_state": "MN", "found_country": "Clay", "found_GPS_lat": "46.86731 N", "found_GPS_long": "96.76041 W", "found_year": 2023, "p_institution": { "institution_code": "MSUM", "institution_name": "Minnesota State University Moorhead", "institution_logo": "https://phagesdb.org/media/institutions/MSUM.png", "institution_url": "https://www.mnstate.edu/", "institution_city": "Moorhead", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "We found the phage in the soil we got from the quad on the MSUM campus. It was 64 degrees Fahrenheit while being cloudy and rainy.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "It creates both pin prick plaques and larger plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BoyBye_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-05T10:43:31-04:00", "date_modified": "2023-10-05T10:43:31-04:00" }, { "phage_name": "Boyd", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Hurst", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "Edith J. Carrier Arboretum, forest path soil, moist soil, just below the surface. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-08-17T07:17:12-04:00", "date_modified": "2015-04-29T14:32:01-04:00" }, { "phage_name": "Boyer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Christine Boyer", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.3057 N", "found_GPS_long": "77.4763 W", "found_year": 2008, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": true, "discovery_notes": "From moist, damp soil, depth 4 cm, near a creek on the UMW campus. 75°", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, regular shaped circles, spread out.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/boyer_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/boyer_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/boyer_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boyer_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Boyer_EMPic_Thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-12-05T16:03:30-05:00" }, { "phage_name": "Boyfriend", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"This is the closest thing I have to a boyfriend at the moment\" - Brielle", "finder_name": "Brielle DeBusk and Shelby Creek", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": null, "discovery_notes": "Found near a pond of water on Doane College campus. It was a sunny morning at 9:15am on September 5, 2014. The soil was damp from a rain the night before.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-01-20T11:42:20-05:00", "date_modified": "2020-09-17T14:05:49-04:00" }, { "phage_name": "Boygenius", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Boygenius is a music group that I like :)", "finder_name": "Zoe Glantz", "found_city": "Kirkwood", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.56899 N", "found_GPS_long": "90.422259 E", "found_year": 2024, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Screenshot_2024-05-05_at_12.54.12_PM.png", "dnam_file": null, "date_added": "2024-03-28T12:11:55-04:00", "date_modified": "2025-04-04T11:37:30-04:00" }, { "phage_name": "Boyle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Boyle got his name in honor of the building he was purified in was named Joanne Woodyard Boyle Health Science Center. ", "finder_name": "Katy Heslop and John Cole", "found_city": "Greensburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.309898 N", "found_GPS_long": "79.557391 W", "found_year": 2016, "p_institution": { "institution_code": "STHL", "institution_name": "Seton Hill University", "institution_logo": "https://phagesdb.org/media/institutions/setonhill.jpg", "institution_url": "http://www.setonhill.edu/", "institution_city": "Greensburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.310649", "institution_longitude": "-79.55630" }, "enriched_sample": false, "discovery_notes": "Boyle was found under the stairs outside of Havey Hall at Seton Hill University. The climate was a warm September day, but did not reflect on the soil since the soil was under the stairs. ", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B2" }, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology showed the sizes of clearing on the L-agar plate. The plate was completely clear, which means it is lytic phage.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-12-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1043, "finishing_reactions": 0, "genome_length": 67491, "gcpercent": "69.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Boyle_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-03-05T18:38:07-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Boyle_flat.txt", "qced_genbank_file_date": "2018-03-05T18:38:07-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH051249", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Boyle.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-27T17:03:56-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BoyNamedSue", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a Johnny Cash song.", "finder_name": "Sydney Clark", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444364 N", "found_GPS_long": "79.952489 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 18, "growth_notes": "", "pcluster": { "cluster": "CZ", "temperate": true }, "psubcluster": { "subcluster": "CZ1" }, "morphotype": "SIPHO", "plaque_notes": "Prolate Capsid", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-03-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan 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"https://phagesdb.org/media/annotation_submission/CoverSheets/BoyNamedSue_CoverSheet.pdf", "submitted_annotation_date": "2021-03-04T14:13:41-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BoyNamedSue.gbf", "qced_genbank_file_date": "2021-03-04T14:13:41-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, 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"date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Boyotrin18_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-12T10:07:46-05:00", "date_modified": "2022-12-12T10:07:46-05:00" }, { "phage_name": "Boyton3", "old_names": "Hen3e2", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage is a reflection of my family name and the plate label used throughout the discovery process. ", "finder_name": "Megan Hendrie", "found_city": "Worcester", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.2705 N", "found_GPS_long": "71.808 W", "found_year": 2018, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": true, "discovery_notes": "This phage was discovered from soil obtained from a muddy tire track outside of a busy restaurant. The sample was taken in early morning.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "neofelifaecis", "strain_name": "NRRL 59395", "strain_species": { "id": 37, "genus": "Gordonia", "species_name": "neofelifaecis", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 37, "genus": "Gordonia", "species_name": "neofelifaecis", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/HEN3E2_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/HEN3E2_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Boyton3_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Boyton3_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-23T12:07:26-04:00", "date_modified": "2020-09-17T14:10:37-04:00" }, { "phage_name": "BoyWonder", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michael Finck, Rhys Sopp", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.728655 N", "found_GPS_long": "117.19552 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Was very weak during Titer dilutions, required excess M. Foliorum during second round of Titer Dilutions", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-26T02:05:15-04:00", "date_modified": "2019-04-26T02:05:15-04:00" }, { "phage_name": "Boyz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided to name our phage Boyz because our original group name was the Phage Boyz. So now our phage will always be associated this our group name.", "finder_name": "Gavin Weiler and Cole Miedema", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.3957 N", "found_GPS_long": "117.24213 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil sample was originally taken from a muddy area near Lake Arthur in the Gonzaga University campus.", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our phage were found in lytic clear plaques that had a diameter around 3.0-5.0mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-07T11:54:21-05:00", "date_modified": "2020-09-17T14:07:35-04:00" }, { "phage_name": "Boyz71", "old_names": "DaBoyz", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Reference to the Orkz from the Warhammer 40k fictional setting.", "finder_name": "Raymond Li", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States of America", "found_GPS_lat": "41.51448 N", "found_GPS_long": "81.60647 W", "found_year": 2023, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "soil sample taken from compost box in garden. sample collected 9/8/2023", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are clear in the center and become cloudy at the edges. Borders are smooth. Plaques are around 1mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T08:35:30-05:00", "date_modified": "2024-02-25T15:28:33-05:00" }, { "phage_name": "Bozo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Isolating Bozo was a challenge, to a point where it was almost funny. The EM picture reminded us of a balloon, so we came to name him Bozo after a clown.", "finder_name": "Brenda Blanco, Emily Butler, Grace Thomure", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00024 N", "found_GPS_long": "105.2626 W", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The soil was collected from under a tree, next to Baker Hall on the University of Colorado Boulder campus.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques exhibited a 1-3 mm diameter range with a clear morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bozo_Plaque_UAwl4WA.jpg", "em_file": "https://phagesdb.org/media/emPics/Bozo_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Bozo_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bozo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-09T22:07:54-05:00", "date_modified": "2021-01-28T11:04:24-05:00" }, { "phage_name": "BPBiebs31", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Breiah Patterson", "found_city": "Swedesboro", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "39.688386 N", "found_GPS_long": "75.319294 W", "found_year": 2010, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "The soil was collected from a rural area behind a shed. The sample was taken from 4 inches below the surface and was moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques were clear. The average size of the plaques was 3 mm in diameter. The plaques were fast growing appearing after 24 hours of inubation.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-02-02", "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": 53171, "gcpercent": "63.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JF957057", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BPBiebs31_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/BPBiebs31_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/BPBiebs31_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BPBiebs31.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BPBiebs31_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BPBiebs31_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/BPBiebs31.dnam5", "date_added": "2010-11-30T06:05:16-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BPit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brandon Pitzer", "found_city": "Radford", "found_state": "VA", "found_country": "United States of America", "found_GPS_lat": "37.139266 N", "found_GPS_long": "80.539528 W", "found_year": 2020, "p_institution": { "institution_code": "RADF", "institution_name": "Radford University", "institution_logo": "https://phagesdb.org/media/institutions/RADF.png", "institution_url": "https://www.radford.edu/", "institution_city": "Radford", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "A small hole was dug about 3-4 inches beneath the surface on a partly cloudy day. The soil sample was dry and had a dark brown color. It was full of sandy material.", "isolation_temperature": 79, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BPit_EMPic_UEq4jtI.jpg", "digest_file": "https://phagesdb.org/media/digestPics/BPit_Digest_rJmzTye.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BPit_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-09-24T09:38:53-04:00", "date_modified": "2021-05-04T09:46:40-04:00" }, { "phage_name": "Bpop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maria Bio", "found_city": "", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": null, "discovery_notes": "Collected 8/28/16 \r\n86 degrees F / 30 degrees C \r\nHumidity: 49%\r\nDew point: 66 degrees F / 30 degrees C\r\nDry loose soil\r\nDuh 2 centimeters below a rock edge of a mud pile under a maple tree", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Nick name of a friend ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-17T10:45:23-05:00", "date_modified": "2020-09-17T14:07:31-04:00" }, { "phage_name": "BPs", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Tim Sampson", "found_city": "Pittsburgh ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444259 N", "found_GPS_long": "79.953213 W", "found_year": 2006, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2008-03-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "Sanger", "method_name": "Sanger" }, "coverage": null, "finishing_reactions": null, "genome_length": 41901, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "EU568876", "refseq_accession": "NC_010762", "plaque_file": "https://phagesdb.org/media/plaquePics/BPs_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BPsno1EM.jpg", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Restriction_Map_of_Mycobacterium_phage_BPsa.jpg", "fasta_file": "https://phagesdb.org/media/fastas/BPs.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BPs_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BPsno1EM_thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BQuat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hillary Sigale and Sarah Jacobs", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.645638 N", "found_GPS_long": "90.311388 W", "found_year": 2010, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "Soil moist but not saturated, soil from base of compost bins in Burning Kumquat organic garden on Washington University's campus, air temperature was approximately 29C, sample taken from top soil (about 1-2 cm deep).", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are clear and circular with sharp distinct edges. Plaque diameter is approximately .10-.15 cm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-01-18", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 136, "finishing_reactions": 3, "genome_length": 41893, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 61, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BQuat_CompleteNotes_JkLShNW.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BQuat_Minimal_Final_GuzzLZa.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BQuat_Authors_6BmXY56.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BQuat_CoverSheet_q8mo3ha.pdf", "submitted_annotation_date": "2018-12-13T12:31:58-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BQuat_flat.txt", "qced_genbank_file_date": "2018-12-13T12:31:58-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MK305884", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BQuat_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BQuat_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/BQuat_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BQuat.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BQuat_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BQuat_EM_Thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BRabbit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage 'BRabbit' after a character in my favorite anime, Pandora Hearts. In the anime, B is a \"chain\" which needs a contractor in order to display and use their powers. I related this to how a phage needs a host in order to be displayed, so I named her BRabbit. I also had the largest phage in the class, and in the show, B is the main character. ", "finder_name": "Abby Rogers", "found_city": "New Haven", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": false, "discovery_notes": "The soil sample that BRabbit was found in was collected on September 9th, 2015 near a compost pile and under a tree. The temperature was 75 degrees Fahrenheit and I dug 4 centimeters into the soil before collecting. ", "isolation_temperature": 42, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Temperate phage with large plaques measuring about 10 millimeters. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BRabbit_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BRabbit_EMPic.jpg", "dnam_file": null, "date_added": "2015-11-11T10:59:32-05:00", "date_modified": "2020-09-17T14:06:36-04:00" }, { "phage_name": "Brabby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a combination of the student discovers' names, Brady and Abby. We wanted to make sure the name was unique and paid homage to those who found it.", "finder_name": "Brady Stinson-Smith and Abigayle Simpson", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.422561 N", "found_GPS_long": "86.915751 W", "found_year": 2021, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "This phage was discovered by Brady Stinson-Smith and Abigayle Simpson. We were aided in the characterization of Brabby by Stephen Verhoff and Zilin Xianyu. Enriched isolation was used to isolate the phage from soil.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brabby_Plaque_BlrQA8Y.png", "em_file": "https://phagesdb.org/media/emPics/Brabby_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brabby_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brabby_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-26T12:31:37-04:00", "date_modified": "2022-03-16T11:02:06-04:00" }, { "phage_name": "Brabess", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose “Brabess” because it is a combination of all our names. \"B\" from Ben, \"R\" from Ross, \"Ab\" from Abbi, \"Ess\" from Jess.", "finder_name": "J. Applebaum, A. Bertocchi, B. Cullip, R. Curran", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.383611 N", "found_GPS_long": "72.529459 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Right outside Kennedy Hall at UMass Amherst, under some wet gravel.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The average size is about 6 mm, clear center with slightly hazy edges, irregular edges, and not circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/brabess_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/brabess_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-28T11:46:06-04:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "Bracha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "“Bracha” is the Hebrew word for “Blessing.” Even though it is a bacteriophage, I feel blessed to have\r\nbeen able to find it and perform experiments on it with this much success. Perhaps the knowledge\r\nof it will benefit someone in the future", "finder_name": "Sarah Miller", "found_city": "Dahlonega", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.532188 N", "found_GPS_long": "83.9824 W", "found_year": 2021, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfNorthGeorgia.jpg", "institution_url": "http://www.ung.edu/", "institution_city": "Dahlonega", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "34.527800", "institution_longitude": "-83.98442" }, "enriched_sample": true, "discovery_notes": "Mostly dry and sandy red clay.", "isolation_temperature": 34, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~1-3 millimeters", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bracha_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-16T12:35:51-05:00", "date_modified": "2024-02-25T15:28:12-05:00" }, { "phage_name": "Brachtor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Brachtor is a contraction of:\r\n\"brachy-\" (Ancient Greek \"βραχύς\", meaning slow), \r\n\"auct-\" (Latin \"auctor\", meaning \"seller\" or \"author\". This was erronously chosen; what was intended was Latin \"augesco\", meaning to grow), and\r\n\"-tor\" (Latin \"(t/s)or\" meaning \"-er\" (agentive suffix)).\r\n\r\nThe intended meaning is \"slow-grower\".", "finder_name": "Richard Yoder", "found_city": "Fairfax", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.807075 N", "found_GPS_long": "77.193574 W", "found_year": 2021, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil was water-saturated from the adjacent stream. Soil was clay-like, with some organic debris. Soil was collected at Surface to 1 inch deep at 11:48 AM.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brachtor_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brachtor_EMPic_3G0ztZ3.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Brachtor_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-01T13:56:09-05:00", "date_modified": "2022-03-16T11:02:12-04:00" }, { "phage_name": "Brachy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is inspired by the long tail of the phage, which reminded us of the long neck of a brachiosaurus", "finder_name": "Amy Howlett, Lorraine Scott", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6672 N", "found_GPS_long": "117.4042 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage was collected from a flower bed on the side of one of the sidewalks leading to the Myrtle Woldson Performing Arts Center", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques had sharp edges and were reactively clear. However, plaque morphology took a long time to homogenize because they continued to grow for 2 to 3 weeks following plating. After this period they were fairly large and circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brachy_Plaque_hqnDAQA.jpeg", "em_file": "https://phagesdb.org/media/emPics/Brachy_EMPic_jIeZpu6.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Brachy_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Plaque.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Picturetem.png", "dnam_file": null, "date_added": "2023-11-15T09:39:37-05:00", "date_modified": "2024-10-08T10:20:06-04:00" }, { "phage_name": "Brad", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Mansour and Zach Beretich", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.99999 N", "found_GPS_long": "83.02371 W", "found_year": 2017, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AV", "temperate": false }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": 45418, "gcpercent": "45.7", "end_type": "", "repeat_length": 1549, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 56, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brad_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-31T13:29:35-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brad_flat.txt", "qced_genbank_file_date": "2018-05-31T13:29:35-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH450114", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brad.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-06-03T23:47:30-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bradbury", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the street the house is located on", "finder_name": "Alex Barrios", "found_city": "Old Town", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.9323 N", "found_GPS_long": "68.6483 W", "found_year": 2018, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "Outside of 21 Bradbury st house, before entering on the front steps, the soil was gravel like and dark. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Two types of morphologies- Turbid small one and a large clear one", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bradbury_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bradbury_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bradbury_Digest_dcDMqcp.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bradbury_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bradbury_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-10T15:29:16-04:00", "date_modified": "2020-09-17T14:10:13-04:00" }, { "phage_name": "Bradissa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Baylee has a dog named Brady. Liz has a pet named Larissa. We combined the two names and that's how we named our phage. ", "finder_name": "Baylee Musser and Liz Kuniega", "found_city": "Monongahela", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.179428 N", "found_GPS_long": "79.982923 W", "found_year": 2017, "p_institution": { "institution_code": "STHL", "institution_name": "Seton Hill University", "institution_logo": "https://phagesdb.org/media/institutions/setonhill.jpg", "institution_url": "http://www.setonhill.edu/", "institution_city": "Greensburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.310649", "institution_longitude": "-79.55630" }, "enriched_sample": true, "discovery_notes": "This sample was found on August 30, 2017. The sample came from the site where Baylee Musser's family dug for their swimming pool. It was a clear day and really warm. The location of the dirt was in Monongahela, PA. The soil was very crumbly and not moist at all. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CY", "temperate": true }, "psubcluster": { "subcluster": "CY1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-03-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1338, "finishing_reactions": 0, "genome_length": 51954, "gcpercent": "67.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGTATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bradissa_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-01-14T13:36:29-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bradissa_flat.txt", "qced_genbank_file_date": "2019-01-14T13:36:29-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK433274", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bradissa.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-20T13:07:43-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bradley", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "First thing that popped into my head.", "finder_name": "Mackenzie Brezinka", "found_city": "Maple Grove", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "45.079845 N", "found_GPS_long": "93.426489 W", "found_year": 2017, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Soil was partially dry and loose.\r\nAir temperature was 79 degrees Fahrenheit.\r\nSoil was collected from a depth of 80 mm.\r\nWeather was cloudy and humid.\r\nDog was near by", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear and uniform\r\ncircular and small plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bradley_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bradley_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bradley_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bradley_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-08T16:07:15-05:00", "date_modified": "2020-09-17T14:09:19-04:00" }, { "phage_name": "Bradley2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage is named after a country artist Brad Paisley.", "finder_name": "Mari Metter, Ian Melder", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666198 N", "found_GPS_long": "117.404479 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Sample was collected from mud along side Lake Arthur.", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Cultured at 22C. There are 87 plaques total. The size of the plaques range from 0.5cm to .05cm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1793, "finishing_reactions": 0, "genome_length": 17367, "gcpercent": "68.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bradley2_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-08-06T16:37:37-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bradley2_flat.txt", "qced_genbank_file_date": "2019-08-06T16:37:37-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN284892", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bradley2.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-14T13:05:19-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bradman", "old_names": "", "program": null, "naming_notes": "Named after the greatest cricket player of all time: Donald Bradman", "finder_name": "Murray White", "found_city": "El Portal", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "37.678417 N", "found_GPS_long": "119.764422 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found in a flowerbed by a hotel carpark", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-10-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6097, "finishing_reactions": 0, "genome_length": 52729, "gcpercent": "62.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bradman_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bradman.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bradman_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-15T15:22:37-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bradshaw", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after Steelers QB Terry Bradshaw", "finder_name": "Cory Hayes", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44237 N", "found_GPS_long": "79.93464 W", "found_year": 2014, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CA", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-11-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2134, "finishing_reactions": 0, "genome_length": 46606, "gcpercent": "58.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "Buildups of reads from Illumina sequencing data.", "overhang_length": 10, "overhang_sequence": "CGGCCGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bradshaw_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-04-23T17:06:23-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bradshaw.gbf", "qced_genbank_file_date": "2018-04-23T17:06:23-04:00", "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH271293", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Bradshaw_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bradshaw.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bradshaw_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Bradshaw.dnam5", "date_added": "2015-05-01T16:42:05-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Brady", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Dedicated to Tom Brady and the entire New England Patriots team and organization in light of the false accusations put upon them during the 2015 Deflategate.", "finder_name": "Matthew Montgomery", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brady_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brady_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-07-07T17:56:22-04:00", "date_modified": "2020-07-28T09:28:23-04:00" }, { "phage_name": "Brady0512", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Matthew Paul Maschio", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444253 N", "found_GPS_long": "79.953239 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Found in the soil outside of the Cathedral of Learning in Pittsburgh Pennsylvania. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques formed were about 1.5 milliliters in diameter. Clearings were turbid and looked cloudy. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brady0512_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Brady0512_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brady0512_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-03-18T21:56:41-04:00", "date_modified": "2020-09-17T14:08:29-04:00" }, { "phage_name": "Brae", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Brae, because my sister's name is Brae and she always listens to me talk about science even though she doesn't care so she made me name it after her or else I wouldn't be able to tell her about it anymore. ", "finder_name": "Macie Lamontagne", "found_city": "New Haven", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.3351 N", "found_GPS_long": "72.9416 W", "found_year": 2016, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "It was dry and warm outside. The soil was found near a compost pile on campus at Southern Connecticut State University. It was found on top in a disturbed patch with soil in it. ", "isolation_temperature": 42, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are particularly small and temperate. The plaques are about 1 in in diameter and cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brae_Plaque_GIPJ1qF.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brae_Plaque_GIPJ1qF_OgkxLEA.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-06T19:08:06-05:00", "date_modified": "2020-09-17T14:09:28-04:00" }, { "phage_name": "Braelyn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My cousin's name is Braelyn", "finder_name": "Sarah Kempf", "found_city": "Greenwood", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "39.612021 N", "found_GPS_long": "86.214723 W", "found_year": 2018, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "Physical characteristics of collection: Damp, dark brown, full of organic matter. Collected from flower garden, approximately 2 inches under surface. The last rainfall was 36 hours prior to collection, rainfall was moderate for approximately 45 minutes.\r\nAmbient temperature: 92 degrees Fahrenheit", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BE", "temperate": false }, "psubcluster": { "subcluster": "BE1" }, "morphotype": "SIPHO", "plaque_notes": "Tiny to small plaques, not cloudy, well defined", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 601, "finishing_reactions": 0, "genome_length": 131234, "gcpercent": "50.1", "end_type": "TREP", "repeat_length": 10824, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 228, "num_tRNAs": 38, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Braelyn_CompleteNotes_4vVL9h8.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Braelyn_Minimal_Final_2m3Adk4.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Braelyn_Authors_UOnbKhP.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Braelyn_CoverSheet_Nt3mPAG.pdf", "submitted_annotation_date": "2019-06-20T12:21:02-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Braelyn_flat.txt", "qced_genbank_file_date": "2019-06-20T12:21:02-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN096371", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braelyn_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Braelyn_EMPic_D2huS0A.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Braelyn_Digest_1tzojvy.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Braelyn.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Braelyn_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Braelyn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-31T14:25:16-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Braemar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Christine Wilson", "found_city": "Corona", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.88 N", "found_GPS_long": "117.63 W", "found_year": 2011, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": false, "discovery_notes": "Sample came from moist topsoil, 15 cm deep. Sample was found in the backyard vegetable garden of home in Corona, CA and was collected at night at 60 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques were medium-sized, approximately 5mm in diameter, not turbid, and were consistent in size for the most part. There was some variation in phage size as a few smaller, more turbid plaques were present after each plating. Plaque was fast growing. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braemar_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Braemar_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Braemar_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Braemar_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Braemar_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-16T09:46:26-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Brahms", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after Johannes Brahms", "finder_name": "Kerry Iles", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444253 N", "found_GPS_long": "79.953239 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are clear and 3-4 mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-04-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 218, "finishing_reactions": 0, "genome_length": 39828, "gcpercent": "67.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "ACTCCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 68, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brahms_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-09-01T22:16:23-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brahms.gbf", "qced_genbank_file_date": "2018-09-01T22:16:23-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH834602", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brahms_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brahms.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brahms_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Brahms.dnam5", "date_added": "2018-03-29T20:50:51-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Brain", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is an anagram of my first name. It also reflects the ability of phages to \"detect\" the conditions of their surroundings to determine when to lyse the host, almost as if they have a brain.", "finder_name": "Brian Nguyen", "found_city": "Riverside", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "33.909755 N", "found_GPS_long": "117.509257 W", "found_year": 2021, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": true, "discovery_notes": "The soil was dark brownish black and moist from the surface. The surface soil was full of organic matter, mostly green moss. The soil was collected in a radius of about 2 inches and a depth of about 2 cm. The soil was located near a running rusted pipe. Also contained within the sample was bits of twigs and roots.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small-sized, circular, clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brain_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Brain_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brain_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-05-25T09:59:08-04:00", "date_modified": "2022-10-20T11:27:16-04:00" }, { "phage_name": "Brainard", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage in honor of my great-grandmother. She has had a huge influence on my life. She is a really important person in my life. ", "finder_name": "Kelli Laube", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.893744 N", "found_GPS_long": "85.73882 W", "found_year": 2017, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "This phage was discovered using an 8+ control label plate with Gordonia terrae. The phage from this sample made a large bean-shaped plaque on the 8+ control plate. The sample was not one that I had personally collected. It was collected from a compost pile that was damp, moist, and rich in nutrients. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "This phage has plaques that are small, about the size of a tip from a lead pencil. These plaques are fairly consistent in their sizes. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brainard_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brainard_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-30T12:41:31-05:00", "date_modified": "2020-09-17T14:09:35-04:00" }, { "phage_name": "BrainChildren", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a partial anagram for our groups full names (including middle names) together.", "finder_name": "Hannah Edlund and Jillian Crandall", "found_city": "Worcester", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.269455 N", "found_GPS_long": "71.808757 W", "found_year": 2023, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": true, "discovery_notes": "Collected at a depth of 5\"\r\n\r\nTemperature of air 66 F\r\n\r\nTemperature of soil 73 F", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-02T08:46:56-04:00", "date_modified": "2023-10-02T08:46:56-04:00" }, { "phage_name": "BrainDrainer", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Yi-Chia Su", "found_city": "Hualien", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "23.81656 N", "found_GPS_long": "121.43426 E", "found_year": 2022, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-06-24", "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 370, "finishing_reactions": 0, "genome_length": 77709, "gcpercent": "58.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 143, "num_tRNAs": 13, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BrainDrainer_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BrainDrainer.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-25T15:03:37-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BrainFog", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Throughout the SEA Phages lab, I often felt lost and felt like I had a brain fog.", "finder_name": "Khushi Shrestha", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.20968 N", "found_GPS_long": "97.147877 W", "found_year": 2025, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The soil was collected from a sunny area close to the pavements and fountain near Willis library, UNT. The temperature was 52°F and the humidity was 33%. The time was 2:48PM on January 27th. The mud was just a bit wet and clumped up together. It was almost black.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The diameter of the plaque was 1mm. The plaque was clear and abundant.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrainFog_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BrainFog_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-17T21:52:13-04:00", "date_modified": "2025-04-29T15:36:17-04:00" }, { "phage_name": "Brainstorm", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My partner and I have the nicknames of brain and storm for each other and put those together to name our discovery.", "finder_name": "Akilah Williams and Brittany Torres", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.1856 N", "found_GPS_long": "72.3819 W", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "Collected on the Smith College campus on 9/15/16 between 12noon and 1:00pm. Weather was sunny and dry. Temperature was 700F\r\nSoil Sample C collected on the North side of the Medical building on the Smith Campus.\r\nApproximately 2cm deep.", "isolation_temperature": 70, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "We have cloudy plaques which indicate that our phage is temperate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-30T20:39:54-04:00", "date_modified": "2019-10-30T20:39:54-04:00" }, { "phage_name": "Brakence", "old_names": "mico", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ernest Ngou", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.269028 N", "found_GPS_long": "75.718472 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Phage was found in a flower bed in Barrhaven, Ottawa", "isolation_temperature": 9, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage formed small sized clear plaques and the morphology of phage is Siphoviridae with long", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brakence_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Brakence_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Brakence_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brakence_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brakence_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-19T07:56:02-04:00", "date_modified": "2025-07-29T14:39:40-04:00" }, { "phage_name": "Bralma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Britte Harder and Salma Shairulla combined their first names together to name their discovered phage, Bralma.", "finder_name": "Britte Harder, Salma Shairulla", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66 N", "found_GPS_long": "117.4 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "On the 10^-5 dilution of Bralma's full plate titer of the lysate, the plaques were round and generally of the same small size. It appears that a temperate phage might be present because of the turbidity of the plaques. There were 13 plaques, all of which were concentrated towards one side of the plate (bottom right). The titer of this plate was 4.33 x 10^8 .", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bralma_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bralma_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bralma_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bralma_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-03-29T21:00:39-04:00", "date_modified": "2020-09-17T14:10:45-04:00" }, { "phage_name": "Bram", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after AP Bio teacher who made me realize my love for research", "finder_name": "Kate Krakopolsky", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.118785 N", "found_GPS_long": "75.035587 W", "found_year": 2016, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": false, "discovery_notes": "Dug a few inches to collect\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques vary in size between plates but are of consistent size on one plate\r\n\r\nRelatively small plaques, ranging from less than half of 1 mm to 4 mm in diameter", "lysogeny_notes": "not lysogenic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bram_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bram_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-20T15:53:39-04:00", "date_modified": "2020-09-17T14:07:04-04:00" }, { "phage_name": "Bramble", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named after a snail found during the discovery process.", "finder_name": "Traonna Cunningham", "found_city": "Clarksville", "found_state": "TN", "found_country": "United States of America", "found_GPS_lat": "36.53246 N", "found_GPS_long": "87.35115 W", "found_year": 2024, "p_institution": { "institution_code": "APSU", "institution_name": "Austin Peay State University", "institution_logo": "https://phagesdb.org/media/institutions/austinPeay.jpg", "institution_url": "", "institution_city": "Clarksville", "institution_state": "TN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The phage was discovered in the undergrowth of a garden.", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "EF", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-31", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2944, "finishing_reactions": 0, "genome_length": 56961, "gcpercent": "62.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bramble_CompleteNotes_lHLibq1.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bramble_Minimal_Final_p1VL3kB.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bramble_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bramble_CoverSheet.pdf", "submitted_annotation_date": "2025-06-24T20:57:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bramble_flat_TwW9naL.txt", "qced_genbank_file_date": "2025-06-24T20:57:32-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915822", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bramble_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bramble.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-13T16:37:47-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "BraMdu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage name is pronounced as Bram-du.", "finder_name": "Mbali Shoba", "found_city": "Cape Town", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "33.917281 S", "found_GPS_long": "18.384846 E", "found_year": 2024, "p_institution": { "institution_code": "TASK", "institution_name": "TASK South Africa", "institution_logo": "https://phagesdb.org/media/institutions/TASK-Logo.png", "institution_url": "https://task.org.za/", "institution_city": "Cape Town", "institution_state": "", "institution_country": "South Africa", "institution_latitude": "33.904681 S", "institution_longitude": "18.586653 E" }, "enriched_sample": false, "discovery_notes": "This phage was found in the Atlantic Ocean in Cape Town at Sea Point close to where you find seaweed and rocks.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-05-28T09:05:58-04:00", "date_modified": "2024-05-28T09:05:58-04:00" }, { "phage_name": "Bran", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Not a huge fan of Raisin Bran but always admired the name \"Bran\"", "finder_name": "Kelly Kim", "found_city": "Birmingham", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "33.543682 N", "found_GPS_long": "86.779633 W", "found_year": 2018, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": false, "discovery_notes": "Bran was isolated from an enriched sewage sample.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "EP", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "After performing 4 rounds of phage titer assay to isolate one type of phage, 103 small and separate plaques formed on the 10^8 dilution plate after incubating in 37°C after 48 hours. A high titer lysate (HVL) was acquired utilizing this dilution, and the titer came out to be 2.06x10^11 pfu/mL.", "lysogeny_notes": "Signs of potential lysogen formation appeared when distinct halos formed during the spot titer assay, which was executed to find the titer of the medium titer lysate. After successfully testing that the phage cannot infect itself, it is highly possible for Bran to form stable lysogens.", "seq_finished": true, "date_finished": "2018-12-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1106, "finishing_reactions": 0, "genome_length": 44484, "gcpercent": "67.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 17, "overhang_sequence": "CCCCAGCGCCTCGGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 69, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bran_Minimal_Final_wCeQgSe.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-05-26T22:01:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bran_flat_9zOPI6z.txt", "qced_genbank_file_date": "2019-05-26T22:01:46-04:00", "isolation_host": { "genus": "Corynebacterium", "species": "xerosis", "strain_name": "ATCC 373", "strain_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "373", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK977714", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bran_Plaque_q5hg0ce.png", "em_file": "https://phagesdb.org/media/emPics/Bran_EMPic_7at5mni.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bran.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bran200.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bran_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-30T11:48:24-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Branch", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our first choice was Kesha, but that name was taken. We couldn't come up with a good name but then looked out the window and saw a tree branch. That's where the name Branch came from.", "finder_name": "Olivia Ashby and Olivia Medal", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66685 N", "found_GPS_long": "117.40582 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This sample was collected next to the lake in front of the Gonzaga amphitheater. The sample came from the damp dirt directly next to a tree.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are an average of 8.8mm in diameter with some plaques being relatively large and others being small. They are very circular and have thick halos that suggest that there is still live bacteria present in the area.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Branch_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Branch_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Branch_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/OAOMPlaqueThumbnail.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/C2-Phageoption1.jpg", "dnam_file": null, "date_added": "2022-04-12T11:27:22-04:00", "date_modified": "2024-02-25T15:28:08-05:00" }, { "phage_name": "Brandon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my twin brother Brandon.", "finder_name": "Derek Hollingsworth", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.880806 N", "found_GPS_long": "117.233889 W", "found_year": 2014, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Found about an inch below the surface after moving aside some dead leaves.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "A clear inner ring about 1 mm in diameter, and a turbid outer ring about 8 mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brandon_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brandon_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brandon_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brandon_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brandon_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-10T14:38:53-05:00", "date_modified": "2020-07-29T14:08:51-04:00" }, { "phage_name": "BrandonJay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brandon Schultz", "found_city": "Bismarck", "found_state": "ND", "found_country": "United States", "found_GPS_lat": "46.724444 N", "found_GPS_long": "100.753611 W", "found_year": 2019, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": true, "discovery_notes": "Muddy", "isolation_temperature": 6, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-12T08:55:50-05:00", "date_modified": "2020-09-17T14:11:48-04:00" }, { "phage_name": "Brandonk123", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Brandonk123 is Brandon's name + his birthday since he is bad at naming.", "finder_name": "Brandon Kretlow, Brooke Butkowski", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.8502 N", "found_GPS_long": "92.624713 W", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": false, "discovery_notes": "soil sample collected at 2:13pm under a bridge by the Uwrf sports center with moist and sandy soil conditions. at 10mm depth in 73°F in sunny conditions 54% humidity. This phage was discovered by Brooke and then further tested by Brandon in the lab", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE1" }, "morphotype": "SIPHO", "plaque_notes": "the plaques are in the shape of a semihalo and are about 4-5 mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1628, "finishing_reactions": 0, "genome_length": 58842, "gcpercent": "67.3", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brandonk123_Minimal_Final_5QmiNQu.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-01-15T18:08:22-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brandonk123_flat_u1pjgC6.txt", "qced_genbank_file_date": "2018-01-15T18:08:22-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG812487", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brandonk123_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brandonk123.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brandonk123_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-21T14:04:10-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Brandonut454", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The original soil sample was retrieved from the backyard garden of a friend and fellow UNLV student, Brandon. I dedicate and named the phage in honor of his contribution to the research I was able to conduct.", "finder_name": "Devin Urbina", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.107816 N", "found_GPS_long": "115.232868 W", "found_year": 2021, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "The soil sample was originally taken from garden soil that was a mix of steer manure and MiracleGro brand soil and fertilizer. The soil was taken in close proximity to a young lime tree, about 20.0cm into the soil bed.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The diameter of the plaques observed though serial dilution plaque assays ranged from 1.0mm to 2.5mm. Plaques were consistently clear and lytic when cultured on host bacterial top agar plates.", "lysogeny_notes": "Currently no tested lysogenic behavior.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brandonut454_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brandonut454_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-22T11:22:41-05:00", "date_modified": "2022-03-16T11:01:54-04:00" }, { "phage_name": "BrandOT", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my internet son!!", "finder_name": "Theresa Chiu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44166 N", "found_GPS_long": "80.008586 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "By a patch of dirt with weeds and a few small brush at Point Park.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, circular plaques that look pretty blown out.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrandOT_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-07-11T07:02:05-04:00", "date_modified": "2024-07-11T07:02:05-04:00" }, { "phage_name": "Brandy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brandy Simpson", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.3064 N", "found_GPS_long": "77.4777 W", "found_year": 2008, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": true, "discovery_notes": "From soil, depth 3.25 cm, from the front \"lawn\" of Jepson Science Center at UMW. Raining/Drizzling, little foot traffic, next to mulched flower bed and fountain", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/brandy_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/brandy_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/brandy_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/brandy_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/brandy_EM_thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Branta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Branta was named after a cat of one of its discoverers.", "finder_name": "Paloma Whitworth and Clare Wilmes", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667828 N", "found_GPS_long": "117.40307 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We collected this soil sample from approximately 3 cm under the ground. This collected from under a tree and the soil was fine in texture.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are approximately 5 mm in diameter, clear, and circular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Branta_Plaque_BriPu4d.jpg", "em_file": "https://phagesdb.org/media/emPics/Branta_EMPic_NvIawMS.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Branta_Plaque_Thumb_fL7TL5y.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Branta_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-08T21:52:20-05:00", "date_modified": "2020-09-17T14:10:45-04:00" }, { "phage_name": "Brantalek", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": " Brendan Buehler & Chloe Antalek", "found_city": "Nyack", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.090578 N", "found_GPS_long": "73.933894 W", "found_year": 2018, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-09T11:24:43-04:00", "date_modified": "2020-09-17T14:10:44-04:00" }, { "phage_name": "Branton", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Clayton & Clint Branton", "found_city": "Tensas Parish", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.326783 N", "found_GPS_long": "91.339016 W", "found_year": 2010, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "damp ditch, air temperature", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "medium, turbid", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Branton_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Branton_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Branton_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Branton_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Branton_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-18T10:36:29-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "BRaptor", "old_names": "Bactaraptor", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combination of \"bacteria\" and \"raptor\" because it ate away at the bacteria quickly.", "finder_name": "Marin Pearson", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.004861 N", "found_GPS_long": "105.265639 W", "found_year": 2025, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~2mm in diameter \r\nClear periphery - lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BRaptor_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/BRaptor_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-24T08:35:55-04:00", "date_modified": "2025-04-30T14:03:23-04:00" }, { "phage_name": "Braqsa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it BRAQSA, meaning \"Dance\", in Persian/Farsi language. Dancing brings people together, \"cluster\".", "finder_name": "Delaram Dastan", "found_city": "Fairfax", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.3075 N", "found_GPS_long": "77.3075 W", "found_year": 2018, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "I found my phage near Innovation Hall building at George Mason University on a sunny day. ", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BRAQSA_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BRAQSA_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-06T12:06:51-05:00", "date_modified": "2020-09-17T14:10:27-04:00" }, { "phage_name": "Brasa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came by combining the names of the 2 people who isolated the phage sample.", "finder_name": "Brandon Mathew, Satchel Ramirez", "found_city": "New Hyde Park", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "40.751983 N", "found_GPS_long": "73.662383 W", "found_year": 2021, "p_institution": { "institution_code": "NYIT", "institution_name": "New York Institute of Technology", "institution_logo": "https://phagesdb.org/media/institutions/newyorkIT.png", "institution_url": "", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I found the sample in the soil in the backyard of my house.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large Bullseye plaque morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-08T11:58:22-05:00", "date_modified": "2022-03-16T11:02:37-04:00" }, { "phage_name": "Brasilianraine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ky'Lyn Lampkin", "found_city": "Washington D.C", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T19:55:39-04:00", "date_modified": "2020-09-17T14:10:05-04:00" }, { "phage_name": "BrassKatana", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is simply a combination of words that sound pleasing to me and it is rare that I find such a remarkable pair of words.", "finder_name": "Jacob Newberry", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.2081 N", "found_GPS_long": "97.1364 W", "found_year": 2019, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "It was collected on 1/28/19 at 1357 on 701 S Carroll Blvd, Denton, TX 76201. The soil condition was damp and the local air temperature was 14.44°C.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The average plaque diameter is 1.5mm, plaques tend to be round and slightly turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrassKatana_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BrassKatana_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BrassKatana_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-01T13:22:31-04:00", "date_modified": "2020-09-17T14:11:20-04:00" }, { "phage_name": "Brat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Its name is Brat because getting this phage has been a pain.", "finder_name": "Ella Moran & Ashlyn Saeger", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "UNEL", "institution_name": "University of Nebraska-Lincoln", "institution_logo": "https://phagesdb.org/media/institutions/UNebraska_Lincoln.jpg", "institution_url": "http://www.unl.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.820246", "institution_longitude": "-96.70047" }, "enriched_sample": null, "discovery_notes": "Found on 8/31/16. The air temperature was 81 degrees Fahrenheit. The phage was found in topsoil, under mulch, behind a statue (Bruno Lucchesi's 'Pieta') outside of UNL's Sheldon Art Museum.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Forms tiny, clear plaques, about 0.7 mm to 1 mm in width. The plaques formed very slowly, sometimes up to around 60 hours.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-29T21:02:49-05:00", "date_modified": "2020-09-17T14:08:59-04:00" }, { "phage_name": "Brat365", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after the Charli XCX brat album.", "finder_name": "Tyler Collins", "found_city": "Frostburg", "found_state": "MD", "found_country": "Allegany", "found_GPS_lat": "39.65425 N", "found_GPS_long": "78.92735 W", "found_year": 2024, "p_institution": { "institution_code": "FRST", "institution_name": "Frostburg State University", "institution_logo": "https://phagesdb.org/media/institutions/fsulogored.jpg", "institution_url": "https://www.frostburg.edu/", "institution_city": "Frostburg", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-26T08:29:07-05:00", "date_modified": "2025-04-04T11:37:25-04:00" }, { "phage_name": "Brataylor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brady Taylor", "found_city": "Galveston", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "29.279137 N", "found_GPS_long": "94.806243 W", "found_year": 2014, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-11-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1672, "finishing_reactions": 0, "genome_length": 51067, "gcpercent": "65.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "Clear read buildups separated by 11 bp; similarity to Zemlya, Sujidade, and Lika.", "overhang_length": 11, "overhang_sequence": "CGGCCAGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 77, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brataylor_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brataylor_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Brataylor_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Brataylor_CoverSheet.pdf", "submitted_annotation_date": "2016-05-20T23:09:16-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brataylor_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX507345", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brataylor.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Brataylor.dnam5", "date_added": "2014-11-05T15:03:01-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bratitat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bratitat is my nickname because apparently I can be a brat sometimes.", "finder_name": "Brittany Buren", "found_city": "Sheldon", "found_state": "IA", "found_country": "USA", "found_GPS_lat": "43.1794 N", "found_GPS_long": "95.8364 W", "found_year": 2018, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "This soil sample was found in my backyard.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T10:12:40-04:00", "date_modified": "2020-09-17T14:09:33-04:00" }, { "phage_name": "Bratwurst", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from the German sausage usually made of pork.", "finder_name": "Malcolm Wilson", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.415251 N", "found_GPS_long": "75.689639 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in a mud sample during a rainstorm in a dogpark under a tree.", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques generated by Bratwurst are very clear and large - indicating a strong lytic tendency.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sulfureus", "strain_name": "NRRL B-14730", "strain_species": { "id": 62, "genus": "Arthrobacter", "species_name": "sulfureus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 62, "genus": "Arthrobacter", "species_name": "sulfureus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bratwurst_Plaque_NniZTo1.png", "em_file": "https://phagesdb.org/media/emPics/Bratwurst_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Bratwurst_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bratwurst_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-10T15:37:52-04:00", "date_modified": "2025-07-29T14:41:50-04:00" }, { "phage_name": "BratwurstDog", "old_names": "SausageDog", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "One of our member's favorite dog breed is Dachshund. Instead of naming Dachshund, we named it as SausageDog because it sounds cuter", "finder_name": "Ian, Chieh-Hsun(Scott)", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.422514 N", "found_GPS_long": "86.917248 W", "found_year": 2023, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "The soil sample was collected on 08/31/2023 at 2:23 pm. The weather was sunny and 47% humidity. There was no raining around the day of collection. The soil was dry and was collected under a tree next to a research building", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque was turbid with round-edge shape. It was hard to identify at first since it is hard to distinguish from the background.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-02T07:23:09-04:00", "date_modified": "2024-02-25T15:28:36-05:00" }, { "phage_name": "Bratz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combining both the investigators' last names", "finder_name": "Alanna Bram and Marissa Schmitz", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984444 N", "found_GPS_long": "92.754444 W", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Compost soil with kitchen and yard waste, semi-moist, with small pieces of leaves and other debris.\r\nMay be similar to phage Strosahl - same soil source, similar characteristics", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Consistently varied plaque morphology, throughout experimentation. Performed four total plaque purifications using titrations, and still observed large, medium, and small plaque forming units at every stage of the experiment. \r\n\r\nDespite varied plaque morphology, the plaques did display consistently clear plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bratz_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Bratz_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Bratz_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bratz_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bratz_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-09T18:50:54-05:00", "date_modified": "2020-09-17T14:06:37-04:00" }, { "phage_name": "Braundafied", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maxwell Braund", "found_city": "", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "41.81829 N", "found_GPS_long": "86.26613 W", "found_year": 2024, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "9/15/2024 at 2:00PM, Air temp of 87°, sun, recently wetted but not saturated.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaques are clear with a defined edge after 48 hrs incubation at 34°C. The plaques are relatively small but can vary from small to very small, from 1mm to a pinprick.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braundafied_Plaque.heic", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Braundafied_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-30T09:32:10-04:00", "date_modified": "2025-04-04T11:37:23-04:00" }, { "phage_name": "BrAva", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first part of the phage name ,Br, comes from Brandon Huyck. The second part of the name, Ava, comes from Ava Wassermann.", "finder_name": "Brandon Huyck and Ava Wassermann", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66568 N", "found_GPS_long": "117.39849 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found this phage near McCarthy Athletic center in Spokane, WA. It was in the grass right off the side of a hill where a couple of trees are.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": { "subcluster": "EK1" }, "morphotype": "", "plaque_notes": "Our plaques were quite small throughout the entire series of experiments. They ranged from about 2mm-5mm. Most of the plaques were circular and had distinct boundaries.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrAva_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/AWBH.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-10T10:19:07-04:00", "date_modified": "2024-10-08T10:20:06-04:00" }, { "phage_name": "Brave", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Everyone is so brave all the time.", "finder_name": "Serena Slatas", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44799 N", "found_GPS_long": "79.95574 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "I collected this dirt from between the roots of a tree on 6/6. The plaque picture was taken after 48 hours of incubation. \r\nAnnotated by Megan Magee.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "JB", "temperate": null }, "psubcluster": { "subcluster": "JB1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-10-01", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 9833, "finishing_reactions": 0, "genome_length": 18136, "gcpercent": "53.3", "end_type": "PROT", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 24, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brave_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-01-08T00:07:48-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brave.gbf", "qced_genbank_file_date": "2025-01-08T00:07:48-05:00", "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ868990", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brave_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Brave_Digest_jPvSoLH.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brave.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Screen_Shot_2024-06-20_at_2.11.15_PM.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-06-20T07:27:40-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Braveheart", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Susan Gurney", "found_city": "Elkins Park", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.00779 N", "found_GPS_long": "75.118817 W", "found_year": 2020, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-02T13:36:58-05:00", "date_modified": "2021-01-28T11:04:04-05:00" }, { "phage_name": "Bravo", "old_names": "Gamw", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I am proud of my phage and Johnny Bravo is a huge inspiration to me.", "finder_name": "Bryan Gamwo", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443889 N", "found_GPS_long": "79.955278 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "The phage was adopted from Erika Fernau's spot test. The soil sample was collected outside of the University Pharmacy", "isolation_temperature": -4, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Has two morphologies. The large plaque is about 3 mm in diameter and the small plaque is about 1.5 mm in diameter.", "lysogeny_notes": "Plaques formations show it is a lytic phage. Lysogen testing must be done to be sure.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bravo_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bravo_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bravo_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-03-18T23:25:16-04:00", "date_modified": "2020-09-17T14:08:29-04:00" }, { "phage_name": "Bravo210", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Aaliyah Canchola", "found_city": "Roca", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "40.6946 N", "found_GPS_long": "96.6468 W", "found_year": 2023, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "Adopted phage from Lyndsey Caba (MamaL)", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bravo210_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bravo210_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-03-30T07:29:37-04:00", "date_modified": "2025-07-11T12:34:12-04:00" }, { "phage_name": "Bravo6", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "the new call of duty modern warfare game came out and the trailer used the callsign \"bravo6\" so i thought it would be cool", "finder_name": "Eoin Keran", "found_city": "Ames", "found_state": "IA", "found_country": "United states", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": false, "discovery_notes": "not very eventful. just grabbed some grass clippings", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bravo6_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bravo6_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-04T14:01:27-05:00", "date_modified": "2020-09-17T14:11:37-04:00" }, { "phage_name": "Bravocanis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage is name after my dog whose name is Bravo. I chose to add \"canis\" because it is the Latin word for dog. I chose to use the Latin word for dog because his previous owner was Latino.", "finder_name": "Justice Dixon", "found_city": "Rock Hill", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "WNTH", "institution_name": "Winthrop University", "institution_logo": "https://phagesdb.org/media/institutions/WinthropUniversity.jpg", "institution_url": "http://www.winthrop.edu/", "institution_city": "Rock Hill", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "34.939523", "institution_longitude": "-81.03154" }, "enriched_sample": false, "discovery_notes": "Soil was collected between the Artesian Well and Margaret Nance Hall but on the opposite side of the street, under a tree on Winthrop campus. The time of day was 8:30 a.m. The temperature was 72 degrees F with the sun barely peeking through the clouds. The soil collected was fairly dry.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small to medium plaques,plaques measure from about 0.2 cm in diameter to 0.4 cm in diameter, clear in color", "lysogeny_notes": "No sign of lysogeny.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bravocanis_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bravocanis_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bravocanis_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-25T14:02:39-04:00", "date_modified": "2020-09-17T14:09:59-04:00" }, { "phage_name": "Braxoaddie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I nanny two kids during the summer, Braxon and Haddie, and I combined their names to name the phage.", "finder_name": "Sophia Doorn", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.932919 N", "found_GPS_long": "85.597268 W", "found_year": 2022, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "The sample was taken from about two inches into the ground. It was slight damp and sandy and found in an area that was shaded by brush.", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "CR", "temperate": false }, "psubcluster": { "subcluster": "CR6" }, "morphotype": "SIPHO", "plaque_notes": "Braxoaddie is a lytic phage because the plaques are clear, round, and have defined edges. The plaques were just above 1 mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-12-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1933, "finishing_reactions": 0, "genome_length": 67415, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "AGCCGCGTAC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Braxoaddie_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2023-04-26T16:22:05-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Braxoaddie.gbf", "qced_genbank_file_date": "2023-04-26T16:22:05-04:00", "isolation_host": { "genus": "Rhodococcus", "species": "equi", "strain_name": "NRRL B-16538", "strain_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OQ938585", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braxoaddie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Braxoaddie_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Braxoaddie.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-09T09:19:11-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Braxton", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Its my nickname my friends call me at places I don't want people knowing my real name.", "finder_name": "John Taylor", "found_city": "Cullowhee", "found_state": "NC", "found_country": "US", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": null, "discovery_notes": "Was found between college dorms creek underneath a rock where the water met the land. The dirt sample was dark and grainy mud. Would not accept GPS so latitude 35.3136 North and 83.1763 West.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Its small clear freckles with no halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braxton_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Braxton_EMPic.JPG", "digest_file": "https://phagesdb.org/media/digestPics/Braxton_Digest_HSK0J20.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Braxton_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-20T23:27:21-05:00", "date_modified": "2020-09-17T14:11:26-04:00" }, { "phage_name": "BrayBeast", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a Wisconsin cryptid, the Beast of Bray Road, a fearsome werewolf-like creature said to stalk the area around Walworth County.", "finder_name": "Lilianna Rolands & Makayla Mobeck", "found_city": "River Falls", "found_state": "WI", "found_country": "United States of America", "found_GPS_lat": "44.850324 N", "found_GPS_long": "92.62767 W", "found_year": 2022, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Collected: February 1st, 2022 \r\n\r\nTime collected: 4:37 PM \r\n\r\nLocation: Behind Stratton Hall, right before railing on the Johnson side. \r\n\r\nSoil condition: Frozen, Packed \r\n\r\nSoil depth (mm): 35 mm \r\n\r\nWeather: Partly Cloudy, Sun setting", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "FB", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Uniform clear pinpoint plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-07-21", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3938, "finishing_reactions": 0, "genome_length": 37962, "gcpercent": "63.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "TCCGCCCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BrayBeast_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-01-22T11:47:11-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BrayBeast_flat.txt", "qced_genbank_file_date": "2024-01-22T11:47:11-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP358749", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrayBeast_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BrayBeast_EMPic_jYsgOxv.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BrayBeast.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-05T08:13:41-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Braydizzle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Keanan Eisenbart", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": null, "discovery_notes": "The sample taken from the soil has wet and muddy. It also had organic matter in it, which was easily separated from the sample.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Braydizzle_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Braydizzle_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Braydizzle_EMPic.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-26T10:57:51-05:00", "date_modified": "2020-09-17T14:07:53-04:00" }, { "phage_name": "Brazmine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jazmine Harry and Brianna Harris", "found_city": "Washington", "found_state": "DC", "found_country": "United States", "found_GPS_lat": "38.926944 N", "found_GPS_long": "77.020556 W", "found_year": 2022, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-26T09:58:31-04:00", "date_modified": "2024-02-25T15:27:50-05:00" }, { "phage_name": "Brazos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage was found on the bank of the Brazos River, located in Waco. ", "finder_name": "Taewoo Lee", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Phage acquired from soil sample that was taken from the Brazos River bank. Surrounding environment was relatively moist and the current temperature of the day was 102 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-07T09:11:36-05:00", "date_modified": "2017-09-12T10:27:21-04:00" }, { "phage_name": "BrazzalePHS", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from my biology and biotechnology high school teacher. Mr. Brazzale was an amazing teacher who had a passion for biology and teaching. He was very motivated to incorporate biotechnology in his classes and even offered a solo biotechnology class. If it wasn't for him and his classes, I would not have found my love for microbiology. This phage is my thank you gift to him.", "finder_name": "Lauran Korfhage", "found_city": "Ames", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "42.0137 N", "found_GPS_long": "93.6524 W", "found_year": 2020, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": null, "discovery_notes": "Was found under a tree near the starting gate of the ISU cross country course.", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "EC", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-03-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 40, "finishing_reactions": 0, "genome_length": 53255, "gcpercent": "68.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 90, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BrazzalePHS_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BrazzalePHS_Minimal_Final_tIZZ9JJ.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BrazzalePHS_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BrazzalePHS_CoverSheet.pdf", "submitted_annotation_date": "2023-03-05T22:47:39-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BrazzalePHS.gbf", "qced_genbank_file_date": "2023-03-05T22:47:39-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OQ709205", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BrazzalePHS.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-10-13T12:53:57-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Bread", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Contains Brea's first name and the first letter of Olivia's last name", "finder_name": "Brea Murnan, Olivia DeFord", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.62182 N", "found_GPS_long": "96.949539 W", "found_year": 2017, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": false, "discovery_notes": "soil patch was surrounded by small plants, very damp soil, many trees about 10 ft away, around 21°C, area shaded by trees, about 5cm below surface", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Capsid is 91.7nm in width, tail is 91.7nm in length", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 600, "finishing_reactions": 0, "genome_length": 153796, "gcpercent": "64.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 230, "num_tRNAs": 31, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bread_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bread_Minimal_Final_q4jXZDK.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bread_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bread_CoverSheet.pdf", "submitted_annotation_date": "2018-08-19T16:52:25-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bread_flat.txt", "qced_genbank_file_date": "2018-08-19T16:52:25-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Genome Sequences of Three Cluster C Mycobacteriophages, Bipolarisk, Bread, and FudgeTart", "abstract": "Three mycobacteriophages, Bipolarisk, Bread, and FudgeTart, were isolated from enriched soil samples found in Crete, NE. All three phages are lytic, belong to subcluster C1, and infect Mycobacterium smegmatis mc2155. The structures of the three genomes are similar, with slight variations in gene number and content.", "full_author_list": "Dane M. Bowder, Brandon W. Gannon, Kathryn J. Grint, Jason T. Iltz, Teryn M. Koch, Kaitlyn S. Mahnke, Brea D. Murnan, Alexandria M. Osborn, Danielle M. Schreiber, Grace L. Su, Jaime G. Troester, Erin L. Doyle", "short_author_list": "Bowder et al", "article_url": "", "journal": "Microbiology Resource Announcements", "journal_volume": "", "journal_issue": "", "journal_pages": "", "pub_year": "2019", "pubmed_id": "31296672" }, "in_genbank": true, "genbank_accession": "MH779498", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bread_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Bread_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bread.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bread_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bread_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T21:06:48-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Breadboy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was inspired by Peeta in the hunger games.", "finder_name": "Malia Cole, Leah Vaidian, Kyle Gaskill, Adelyn Cho", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.388986 N", "found_GPS_long": "72.523259 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This was discovered in the franklin permaculture garden on the UMass Amherst Campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This plaque is clear, and relatively small in size. The edges are slightly fuzzy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/breadboy_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/breadboy_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-07T07:57:52-04:00", "date_modified": "2024-02-25T15:28:26-05:00" }, { "phage_name": "Breakfast", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Leah Hodkey", "found_city": "Oxford", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T07:57:03-05:00", "date_modified": "2024-02-25T15:28:34-05:00" }, { "phage_name": "BreakingBad", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Danielle", "found_city": "Rocky Mount", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "36.96965 N", "found_GPS_long": "79.92709 W", "found_year": 2022, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BreakingBad_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-09-28T09:21:41-04:00", "date_modified": "2024-02-25T15:27:55-05:00" }, { "phage_name": "Breakneck", "old_names": "Ethel?", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A synonym of speed, the name 'Breakneck' was chosen to reflect the virulent nature and rapid life cycle of the bacteriophage.", "finder_name": "Kayla Brulloths/Brian P Dunn", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.677777 N", "found_GPS_long": "97.0 W", "found_year": 2018, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Fertilizer: yes\r\nAnimals: Yes (Dogs)\r\nMorphology: Coccus\r\nBody of water: 10+ Meters away", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "lytic, high yielding phage that produces many PFU", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breakneck_Plaque_XsnksaA.png", "em_file": "https://phagesdb.org/media/emPics/Breakneck_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Breakneck_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-08-08T12:31:44-04:00", "date_modified": "2020-06-04T22:38:14-04:00" }, { "phage_name": "Breanne", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Breanne McDermott", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445556 N", "found_GPS_long": "79.9525 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Condition of Soil: Wet and mulchy. \r\n\r\nOutside Weather Conditions: Cloudy and rainy, 68 degrees Fahrenheit. \r\n\r\nNearby Vegetation: Bush and grass. \r\n\r\nLength of Soil Transport: 6 Hours\r\n\r\nStorage Conditions: 68 degrees Fahrenheit in a drawer. \r\n\r\nLength of Storage: 24 Hours. ", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small plaques that are clear with little to no turbidity.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breanne_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Breanne_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Breanne_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breanne_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Breanne_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-09-28T14:19:19-04:00", "date_modified": "2020-09-17T14:08:35-04:00" }, { "phage_name": "Breaux", "old_names": "TheBreaux", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I gave my phage my family's name, because the Breaux had already been used.", "finder_name": "Zachary Breaux", "found_city": "Portland", "found_state": "TX", "found_country": "San Patrico", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "I found my phage in a garden outside of my house. The garden was dewy. It was a hot day outside and the ground was moist. Found three in's under the soil.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My phage expanded very quickly the plaques took up my entire plates.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breaux_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Breaux_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Breaux_Digest.jpg", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Breaux_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breaux_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-08-10T22:57:10-04:00", "date_modified": "2021-05-04T09:45:17-04:00" }, { "phage_name": "Breckenridge", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the barn where I used to ride horses at growing up.", "finder_name": "Devon Elsasser", "found_city": "Blacksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.2381 N", "found_GPS_long": "80.4179 W", "found_year": 2018, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Outside apartment basement near sidewalk. Light traffic. Soil depth of 3.5 cm.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are clear, circular, and consistent, indicating a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breckenridge_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Breckenridge_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Breckenridge_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breckenridge_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Breckenridge_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2018-11-06T09:19:23-05:00", "date_modified": "2020-09-17T14:09:56-04:00" }, { "phage_name": "Brecksit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is a reference to teaching Cade's dog Breck to sit.", "finder_name": "James Stevenson and Cade Newell", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666069 N", "found_GPS_long": "117.400962 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "From soil found outside of Rudolph Fitness Center near the flowers", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are generally 1/2 cm in diameter and are clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brecksit_EMPic.JPG", "digest_file": "https://phagesdb.org/media/digestPics/Brecksit_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brecksit_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brecksit_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-05T16:13:51-05:00", "date_modified": "2020-09-17T14:11:49-04:00" }, { "phage_name": "BredyPeha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Both of our last names.", "finder_name": "Caroline Bredy and Skye Peha", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729822 N", "found_GPS_long": "117.163694 W", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-26T16:24:36-04:00", "date_modified": "2020-09-17T14:08:54-04:00" }, { "phage_name": "Breeniome", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sabreen Afzal", "found_city": "Jericho", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.779001 N", "found_GPS_long": "73.53291 W", "found_year": 2011, "p_institution": { "institution_code": "CUNY", "institution_name": "CUNY, Queens College", "institution_logo": "https://phagesdb.org/media/institutions/QueensCollegeB.png", "institution_url": "http://www.qc.cuny.edu/", "institution_city": "Queens", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.736562", "institution_longitude": "-73.82028" }, "enriched_sample": true, "discovery_notes": "Dug from three inches to the grass's dirt from the backyard of a house.\r\nThe soil was moist and cool at touch, not clumped together.\r\nThe roots of the grass were visible in the soil samples.\r\nThe grass from which the soil was taken was rocky.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Size is less than one millimeter. Clear plaques (probably lytic growth).", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-01-29", "seq_facility": null, "seq_method": null, "coverage": 144, "finishing_reactions": null, "genome_length": 154434, "gcpercent": "64.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 236, "num_tRNAs": 32, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KF006817", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breeniome_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Breeniome_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Breeniome.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breeniome_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-10-03T05:32:51-04:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Breeze", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelly Wood", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2010, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "The phage was found in the soil in my backyard. The soil was on the surface of the ground and was near the root of a tree. At the time the temperature of the soil was around 40°F.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-02-21T08:19:58-05:00", "date_modified": "2019-03-20T10:23:05-04:00" }, { "phage_name": "Breezic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Aubrey Wolf", "found_city": "Sioux City", "found_state": "IA", "found_country": "USA", "found_GPS_lat": "42.455574 N", "found_GPS_long": "96.328776 W", "found_year": 2019, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-11-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 968, "finishing_reactions": 0, "genome_length": 76057, "gcpercent": "58.9", "end_type": "TREP", "repeat_length": 191, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 107, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Breezic_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Breezic_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Breezic_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Breezic_CoverSheet.pdf", "submitted_annotation_date": "2020-02-12T14:46:08-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Breezic_flat.txt", "qced_genbank_file_date": "2020-02-12T14:45:41-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT114160", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breezic_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Breezic.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breezic_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-12T14:33:21-05:00", "date_modified": "2025-09-13T06:41:10-04:00" }, { "phage_name": "Breezona", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Breeze Victor", "found_city": "Brockton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.063572 N", "found_GPS_long": "71.022925 W", "found_year": 2011, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "Loam soil, 3 inches deep, 83 degrees Farenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-01-31", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 160, "finishing_reactions": null, "genome_length": 76652, "gcpercent": "58.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 132, "num_tRNAs": 12, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KC691254", "refseq_accession": "NC_021296", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Breezona_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Breezona.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Breezona_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2011-10-19T10:27:58-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "BreezyB", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a variation of my name and it flows well. The phage is pretty easy going and I feel like the name expresses that.", "finder_name": "Bria Moore", "found_city": "Washington, DC", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.923804 N", "found_GPS_long": "77.019431 E", "found_year": 2016, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "We dug about 3 inches into a garden plot outside of a building on campus. It was a little bit of grass in the area but mostly just soil and weeds. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "medium sized. about .5 cm diameter. I believe the phage is lytic because it produces clear plaques and lyses well consistently. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-17T13:46:05-05:00", "date_modified": "2020-09-17T14:08:03-04:00" }, { "phage_name": "Brekker", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Brekker is named after a book character (Kaz Brekker) from the novel \"Six of Crows\" by Leigh Bardugo", "finder_name": "Kate Pearson", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.668373 N", "found_GPS_long": "117.401598 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Brekker's plaques are larger, about 5-7 mm across, and are clear in the center and turbid around the edges. There are visible rings of varying cloudiness, with the rings getting clearer as they reach the center.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brekker_Plaque_L59Chw1.JPG", "em_file": "https://phagesdb.org/media/emPics/Brekker_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brekker_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brekker_Plaque_Thumb_cXbLEYh.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brekker_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-04-13T11:04:21-04:00", "date_modified": "2020-09-17T14:09:00-04:00" }, { "phage_name": "Brenash", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brenda Cruz Contreras and Ashley Espinoza", "found_city": "Pullman", "found_state": "WA", "found_country": "", "found_GPS_lat": "46.72609 N", "found_GPS_long": "117.1632 W", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-06T08:27:25-05:00", "date_modified": "2022-12-06T08:27:25-05:00" }, { "phage_name": "Brenda", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Susan Westfall", "found_city": "Chesterfield County", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.4723 N", "found_GPS_long": "77.545566 W", "found_year": 2010, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": true, "discovery_notes": "shady urban backyard\r\n12ft from fence\r\n4 cm depth\r\nmoist soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "5mm, clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brenda_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brenda_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-11-29T16:48:51-05:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Brenda1974", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I chose the name because it would represent the time and effort spent discovering the phage.", "finder_name": "Brenda Mendoza", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "27.442374 N", "found_GPS_long": "97.235297 W", "found_year": 2025, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "The soil was very enriched, dark, and moist with a grassy and mint smell. The location had mushrooms present with rotten polly, some roots from a garden bed with herbs.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The plaque size is about 1.3 millimeters in diameter.\r\nLytic morphology", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brenda1974_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Brenda1974_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-07-28T10:13:22-04:00", "date_modified": "2025-07-28T10:13:22-04:00" }, { "phage_name": "Brendan", "old_names": "Micheal", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from my first name. My name is Brendan and it made sense for me to name it after myself", "finder_name": "Brendan Koch", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "43.4809 N", "found_GPS_long": "98.9787 E", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Phage Brendan was discovered following the University of Pittsburgh protocol guide. By following the standard guidelines for isolating a novel phage i was able to grow and develop a series of plaques that resembled phage life present.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were difficult to determine if there was just one present. This was becuase there was a series of sizes present on the Pyca plate itself. However, after numerous attempts at plaque purification it was denoted that the plaques present were in fact just one phage", "lysogeny_notes": "The lysogeny is clear in the photo below. The phages that were extracted on the plaques pictured were lytic. This is indicated by the clearing present at every plaque. There isn’t any area where gordonia may be alive. The gordonia was consumed entirely because of the phages.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-09T12:32:45-04:00", "date_modified": "2020-09-17T14:10:30-04:00" }, { "phage_name": "Brendi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maya Frere", "found_city": "Fort Myers", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "26.4604 N", "found_GPS_long": "81.7801 W", "found_year": 2019, "p_institution": { "institution_code": "FGCU", "institution_name": "Florida Gulf Coast University", "institution_logo": "https://phagesdb.org/media/institutions/fl-gulf-coast-logo-mod.png", "institution_url": "http://www.fgcu.edu/", "institution_city": "Fort Myers", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "26.464294", "institution_longitude": "-81.77359" }, "enriched_sample": true, "discovery_notes": "The sample was taken from inside the FGCU Food Forest. It was picked from the top layer of soil off of the walking path. The soil was damp, but not to a point where it was compact.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are varied in size, ranging from small pinpoint ones to ones that are medium sized. The plaques of this virus are cloudy, almost as if all of the bacteria is not gone.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brendi_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Brendi_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Brendi_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brendi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brendi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-04T19:56:07-05:00", "date_modified": "2020-06-15T13:54:41-04:00" }, { "phage_name": "Brenise", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided our name to be Brenise by moving and interchanging Brenda and Denise together. Once we said it aloud to each other we both liked it and kept it for our phage.", "finder_name": "Brenda E. Hinojoza and Denise A. Borja", "found_city": "El Paso", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.8142 N", "found_GPS_long": "106.4504 W", "found_year": 2012, "p_institution": { "institution_code": "UTEP", "institution_name": "University of Texas at El Paso", "institution_logo": "https://phagesdb.org/media/institutions/UTEP.jpg", "institution_url": "http://www.utep.edu/", "institution_city": "El Paso", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.773367", "institution_longitude": "-106.5057" }, "enriched_sample": true, "discovery_notes": "Soil sample\r\nDamp\r\n3\" deep\r\n96degF", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "We got 11 plaques on the spot assay on the -6 dilution after 48hrs\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brenise_EMPic_1.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Brenise_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brenise_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-15T12:32:56-05:00", "date_modified": "2015-04-29T14:32:01-04:00" }, { "phage_name": "BrenRen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after ourselves because we both have very similar nicknames, we decided to do so but in alphabetical order.", "finder_name": "Brenna E. Mulvey and Serenity L. Kinswoman", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.6223 N", "found_GPS_long": "96.9495 W", "found_year": 2018, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "It was not super hot out, it was about 75-80 degrees that day and sunny. We got our phage from under the pond bridge near the communication building. It was under the bridge in the water. We took a couple of layers from the top. It was wet soil. The spot was in shade from the bridge and trees.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "They are small numerous plaques. They on average have a diameter of 3mm with the halo being 1mm and the center having a diameter of 1mm.", "lysogeny_notes": "Based upon the plaques, the bacteriophage is temperate.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrenRen_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BrenRen_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BrenRen_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BrenRen_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-05T09:26:07-05:00", "date_modified": "2020-09-17T14:09:55-04:00" }, { "phage_name": "Brent", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Shawn London", "found_city": "Broomall", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.96043 N", "found_GPS_long": "75.36064 W", "found_year": 2014, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Taken from in front of a ceramic frog painted with green lead based paint. Under a tree with flowers surrounding the tree.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AO", "temperate": false }, "psubcluster": { "subcluster": "AO1" }, "morphotype": "MYO", "plaque_notes": "Plaques are small, clear and fast growing", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-11-06", "seq_facility": { "short_name": "INDIANA", "facility_name": "The Center for Genomics and Bioinformatics, Indiana University", "contact_person": "", "shipping_address": "", "facility_website": "http://cgb.indiana.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3210, "finishing_reactions": 0, "genome_length": 49879, "gcpercent": "63.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 74, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brent_Final_aUstyqe.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Brent_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Brent_CoverSheet.pdf", "submitted_annotation_date": "2015-05-29T13:16:55-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KT365401", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brent_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brent.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brent_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-09-09T15:52:07-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brent03", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage Brent03 got it's name because Brent is a good friend of mine and 3 is both of our favorite number.", "finder_name": "Gabby Field", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.852222 N", "found_GPS_long": "92.625278 W", "found_year": 2012, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Was discovered on September 10, 2012. I dug about 10 mm into the ground before i collected the sample. The sample was ws collected outside the Agriculture Science buildng on the UWRF campus. The ground was moist but not saturated.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque were about 3-5mm in diamater. The center of the plaque was clear while a turbid halo surrounded the canter. Throughout the plque streak assays, the plaque morthology remained looking the same.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brent03_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brent03_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brent03_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brent03_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brent03_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-12-12T14:24:08-05:00", "date_modified": "2017-09-12T10:27:29-04:00" }, { "phage_name": "Brenton", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named the phage Brenton due to the fact Brenton is a nice name and he is a very attractive person. ", "finder_name": "ZKAS", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.668362 N", "found_GPS_long": "117.398216 E", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The virus was discovered by ZKAS however it was adopted by TNAR for the research purposes of this lab.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-08T22:50:31-05:00", "date_modified": "2020-09-17T14:10:45-04:00" }, { "phage_name": "Brenza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Samuel Brenza", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.551 N", "found_GPS_long": "97.1171 W", "found_year": 2017, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Next to University House Residence Hall at Baylor University. The location I took the soil sample from was shaded and very close to the exterior of the building. The soil was slightly damp and clay-like.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brenza_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Brenza_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brenza_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-02T07:48:01-05:00", "date_modified": "2020-09-17T14:08:15-04:00" }, { "phage_name": "Brenzie03", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after my best friend and the year they were born.", "finder_name": "Kenzie Bohling", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "40.84 N", "found_GPS_long": "96.65 W", "found_year": 2024, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "This bacteriophage was found outside of the back door at a residential hall at Nebraska Wesleyan University.", "isolation_temperature": -12, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brenzie03_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-10T10:21:15-04:00", "date_modified": "2024-04-10T10:21:15-04:00" }, { "phage_name": "BreSam8", "old_names": "BSPathogen", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brenna Fitzmaurice and Sam Saez", "found_city": "Montclair", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.86 N", "found_GPS_long": "74.19 W", "found_year": 2017, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2853, "finishing_reactions": 0, "genome_length": 50843, "gcpercent": "64.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 90, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BreSam8_CompleteNotes_xtbNM5n.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BreSam8_Minimal_Final_H9y311r.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BreSam8_Authors_zj4f0IP.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BreSam8_CoverSheet_wmPqylu.pdf", "submitted_annotation_date": "2018-07-02T12:02:14-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BreSam8_flat.txt", "qced_genbank_file_date": "2018-07-02T12:02:14-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH576949", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BreSam8.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-08T00:10:21-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Breth18", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from my last name and the year", "finder_name": "Jenna Breth", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44304 N", "found_GPS_long": "79.95271 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil Condition: moist, rich, dark in color, mulch\r\n\r\nOutside Weather Conditions: cold, rainy, wet, \r\n\r\nVegetation Nearby: The vegetation nearby consisted of planted flowers and some weeds\r\n\r\nSample was transported for approximately 15 minutes to my house and stored in my desk drawer for 10 hours before being brought into the lab", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques from this phage are very small and clear. About 1mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Breth18_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Breth18_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Breth18_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Breth18_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-19T15:12:12-04:00", "date_modified": "2020-09-17T14:10:30-04:00" }, { "phage_name": "Bretin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my siblings Barry, Bree, and Cristin. Combined their names together to get Bretin.", "finder_name": "Ajalon Brereton", "found_city": "Wethersfield", "found_state": "CT", "found_country": "United States of America", "found_GPS_lat": "41.707 N", "found_GPS_long": "72.703 W", "found_year": 2021, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The environmental sample (soil) was taken from a garden bed in my neighborhood Wethersfield, CT. Using a plastic trowel a hole about 4cm deep was dug and the soil was taken and placed into a 50ml conical tube. The weather was sunny and 22.22 degrees Celsius.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "After direct isolation and plaque assays my plaque morphologies showed tons of plaques. Secondly, throughout the purification process there were many plaques as well.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bretin_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Bretin_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-06T13:08:06-05:00", "date_modified": "2021-12-06T13:08:06-05:00" }, { "phage_name": "Brett", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after the person I adopted my phage from. ", "finder_name": "Shayna Dehmler", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.2638 N", "found_GPS_long": "73.5715 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This soil was collected on a day where it had been snowing, so the soil was very hard at first. The soil then thawed overnight. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small and circular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brett_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Brett_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brett_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-02-19T07:45:08-05:00", "date_modified": "2020-09-17T14:08:29-04:00" }, { "phage_name": "Brevis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Scientific names are in Latin, so our phage has a Latin name. Our phage is a Siphoviridae but has an unusually short tail. Therefore, we named it \"Brevis\" which is Latin for short. ", "finder_name": "Naqvi, Tanzeem & Muntaka, Fahrina", "found_city": "Laurel", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.14711 N", "found_GPS_long": "76.854886 W", "found_year": 2018, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small plaques with spikes, requires 48 hours incubation", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brevis_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brevis_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brevis_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/S7G6_4-Thumb.png", "dnam_file": null, "date_added": "2018-11-04T12:15:17-05:00", "date_modified": "2020-09-17T14:10:08-04:00" }, { "phage_name": "Brewberry", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Devrey Martin & Victoria Cooper", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667864 N", "found_GPS_long": "117.400625 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brewberry_Plaque_NwWR2KG.jpg", "em_file": "https://phagesdb.org/media/emPics/Brewberry_EMPic_jYjFxb7.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brewberry_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brewberry_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-04-05T21:58:23-04:00", "date_modified": "2020-09-17T14:07:35-04:00" }, { "phage_name": "Brewster", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Brewster, Massachusetts which is where my grandparent's beach cottage is.", "finder_name": "Ellen Murray", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.604809 N", "found_GPS_long": "75.379507 W", "found_year": 2023, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "Soil collected from Lehigh University. Adopted from classmate.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Bullseye plaque with clear 3mm diameter center and cloudy ring, usually 6mm diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brewster_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brewster_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brewster_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brewster_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brewster_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-04-14T08:42:42-04:00", "date_modified": "2025-08-28T11:12:51-04:00" }, { "phage_name": "Breylor17", "old_names": "Jeffrobacter", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Taylor Gonzalez and Brendon Pondel", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.004751 N", "found_GPS_long": "83.010869 W", "found_year": 2017, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AU", "temperate": false }, "psubcluster": { "subcluster": "AU1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": 57822, "gcpercent": "49.9", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCT", "sequencing_notes": "at position 21472 bp 30% of reads contain a G instead of consensus T", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Breylor17_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-31T12:26:30-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Breylor17_flat.txt", "qced_genbank_file_date": "2018-05-31T12:26:30-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH450115", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Breylor17.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-06-08T14:37:39-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brezlin", "old_names": "SeaLA", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for our phage is the name of one of our close friends we met here at college.", "finder_name": "Riquita Groh and Makena Cua", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.66518 N", "found_GPS_long": "117.3972 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques present in our full plate titer are medium to large in size and are clearings not bullseyes. Some plaques are isolated and others are superimposed on each other. There are about 60 plaques present.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brezlin_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Brezlin_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Image_5-4-23_at_2.48_PM.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-03T11:46:29-04:00", "date_modified": "2024-10-08T10:20:06-04:00" }, { "phage_name": "Bri12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I just used my nickname \"Bri\" with my first initial of my last name \"D\" blog with my favorite number \"12.\"", "finder_name": "Brianna Dunyak", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.429361 N", "found_GPS_long": "78.861017 E", "found_year": 2021, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "I discovered this phage next to a stream of the UREC building on James Madison University campus.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "sp.", "strain_name": "ISAT203", "strain_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-01T15:19:45-04:00", "date_modified": "2024-02-25T15:28:17-05:00" }, { "phage_name": "Bri160", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bri160 is named partially for Brianna Thomas, who isolated the phage.", "finder_name": "Brianna Thomas", "found_city": "Provo", "found_state": "UT", "found_country": "United States", "found_GPS_lat": "40.242868 N", "found_GPS_long": "111.655214 W", "found_year": 2019, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-31", "seq_facility": { "short_name": "BYU", "facility_name": "BYU DNA Sequencing Center", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 614, "finishing_reactions": 0, "genome_length": 17442, "gcpercent": "68.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bri160_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bri160_Minimal_Final_7pFtLMJ.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bri160_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bri160_CoverSheet.pdf", "submitted_annotation_date": "2020-05-21T14:52:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bri160_flat.txt", "qced_genbank_file_date": "2020-05-21T14:52:38-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": 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null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Briakila_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Briakila_Minimal_Final_A2A6D3D.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Briakila_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Briakila_CoverSheet.pdf", "submitted_annotation_date": "2022-08-31T13:08:49-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Briakila_flat.txt", "qced_genbank_file_date": "2022-08-31T13:08:49-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP434441", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Briakila.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-29T14:28:51-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lu, Ricky (Xi Yan)", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.28272 N", "found_GPS_long": "76.6646 W", "found_year": 2008, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "From soil, depth 8 inches, 32°C, from a two year old compost heap", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "6 mm diameter, round, 48 hours, 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/brian_p.jpg", "em_file": "https://phagesdb.org/media/emPics/brian_em.png", "digest_file": "https://phagesdb.org/media/digestPics/brian_d.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brian_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/brian_em_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-06-02T16:59:13-04:00" }, { "phage_name": "Brianna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brianna Smith", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9218 N", "found_GPS_long": "77.0193 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-17T14:01:22-04:00", "date_modified": "2020-09-17T14:08:19-04:00" }, { "phage_name": "BrianSwimBoy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brian Lo", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Thursday September 6, 2012\r\nTime: 5:07 pm\r\n84 Fahrenheit\r\n3721 San Martin Drive (3.34, -76.62)\r\n5.6 cm below surface of the soil\r\nThe soil was quite damp, but not saturated with water.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1.5 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-07T15:46:00-05:00", "date_modified": "2020-09-17T14:05:56-04:00" }, { "phage_name": "Brick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name originates from the fact that it was found underneath a brick. The name giver is a fan of minimalism.", "finder_name": "Micah Jaffe", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.829519 N", "found_GPS_long": "71.403357 W", "found_year": 2015, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "The soil was moist in the spot where I found it. The area was mostly shaded by trees. The air temperature at the time was 67 degrees Fahrenheit. It was collected at a depth of about 7.5 cm. The soil itself was collected by unearthing a brick from a brick footpath and scraping dirt from the side of where the brick was. The dirt was also directly underneath grass. The brick was replaced after usage.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are very cloudy and difficult to see without a heavily contrasting background. The plaques typically range in size from ~2mm to ~4mm, though the plaque picture is not particularly representative. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brick_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Brick_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brick_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-12T21:28:00-05:00", "date_modified": "2020-06-02T16:11:11-04:00" }, { "phage_name": "Brick1017", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was inspired by one of my favorite rappers, Gucci Mane La Flare. 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null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGAGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 71, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bridgette_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-09-01T22:17:29-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bridgette.gbf", "qced_genbank_file_date": "2018-09-01T22:17:29-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": 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They tend to clump together and clear the plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": 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"https://phagesdb.org/media/plaquePics/s.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brie_EMPic.jpg", "dnam_file": null, "date_added": "2018-11-08T22:25:59-05:00", "date_modified": "2020-09-17T14:11:44-04:00" }, { "phage_name": "BrieCheese", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Diana Presas", "found_city": "La Jolla", "found_state": "CA", "found_country": "United States of America", "found_GPS_lat": "32.880649 N", "found_GPS_long": "117.239598 W", "found_year": 2019, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid at first, and then becomes very lytic after a couple days", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, 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"genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-02-06T12:56:48-05:00", "date_modified": "2017-09-12T10:27:32-04:00" }, { "phage_name": "Brifter", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": 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"genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-11T20:31:39-04:00", "date_modified": "2020-09-17T14:09:42-04:00" }, { "phage_name": "Brigadeiro", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I am Brazilian, so I wanted to give 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"institution_longitude": "-84.74489" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brigee_Plaque.docx", "em_file": "https://phagesdb.org/media/emPics/Brigee_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brigee_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Brigee_EMPic_Thumb_CbQU3TM.jpg", "dnam_file": null, "date_added": "2015-12-02T21:38:52-05:00", "date_modified": "2020-09-17T14:06:28-04:00" }, { "phage_name": "Briggs", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Father's last name", "finder_name": "Katie Briggs", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.8375 N", "found_GPS_long": "96.648056 W", "found_year": 2017, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": null, "discovery_notes": "Soil was wet from snow. Gathered from top layer of soil. People walk in this area a lot. Access to sun.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Larger, clear circles. 2-4mm. \r\nI think it is in the cluster EB, but I also think it could be in cluster ED. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Briggs_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Briggs_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/EM_.jpeg", "dnam_file": null, "date_added": "2017-04-03T12:16:47-04:00", "date_modified": "2020-09-17T14:09:14-04:00" }, { "phage_name": "BrightBird", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was isolated from a sample taken from the Snowbird ski resort, which is often referred to as \"The Bird\"", "finder_name": "Katelynn Barton", "found_city": "Sandy", "found_state": "UT", "found_country": "United States", "found_GPS_lat": "40.570305 N", "found_GPS_long": "111.725528 W", "found_year": 2024, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques had a radius about 3.5mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage turned out to be 100% identical to LunarLander.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrightBird_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BrightBird_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-26T14:43:59-05:00", "date_modified": "2025-04-04T11:37:40-04:00" }, { "phage_name": "Brighteyes", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Brighteyes was selected as this is what the phage's plaque morphology resembles when held to a light. ", "finder_name": "John Lowery", "found_city": "Roberts", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.97156 N", "found_GPS_long": "92.584642 E", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": " The soil sample from which the Brighteyes phage was isolated was collected on 9/12/16 at 9:00AM central time. The soil itself was taken from the side of a ravine within a forest comprised of largely deciduous trees with pine trees on the south side. The deepest point from which soil was taken was 4.5cm beneath the surface. Weather conditions included an ambient temperature of 65 degrees centigrade, humidity of less than 50%, and little cloud cover. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques of this phage were appeared small and round in shape, with average size ranging in diameter from .25mm to 1.0mm. This phage's plaques also exhibited slightly opaque regions (or halos) surrounding each of the plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T19:55:04-05:00", "date_modified": "2020-09-17T14:07:25-04:00" }, { "phage_name": "BrightIdea", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Tasha Thompson", "found_city": "", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "32.866811 N", "found_GPS_long": "117.216748 W", "found_year": 2009, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Located in UCSD mulch pile near VA hospital. Soil from mulch pile with limited foot traffic; pile mostly undisturbed recently; warm at 68 degrees and bright environment. Soil depth 5cm.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3 mm diamter, haloed phage, incubation at 40 hours at 37 degrees Celsius", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Brighton", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We wanted a name that would be memorable. We wanted it to be something that stood out compared to other phages. The name contains a happy meaning. It could \"Brighton\" someones day.", "finder_name": "Marisa Powell and Olivia Catalina", "found_city": "Easton", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "40.69904 N", "found_GPS_long": "75.20864 W", "found_year": 2023, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": true, "discovery_notes": "We found our phage on the campus quad in a muddy mulch bed. We dug 7.62 cm deep at 5 degrees Celsius to collect our sample. The weather was overcast.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "slightly cloudy virulent plaque with a diameter of approximately 1.5 mm, and a slightly indistinct margin.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brighton_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-01T08:32:49-04:00", "date_modified": "2023-05-01T08:32:49-04:00" }, { "phage_name": "Brightside", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Brightside\" came from the idea that every time one's experiment fails, they should look at the bright side of it; they can learn from the experience and grow from it.", "finder_name": "Nathan Board", "found_city": "San Diego", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.866111 N", "found_GPS_long": "117.219167 W", "found_year": 2014, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Soil sample collected on 10/7/14 at 6:45pm from an area of low drainage in the courtyard of the Regents Court apartment complex. At the time of collection, the air temperature was 26 degrees Celsius, and it was sunny and fairly humid. The soil at the collection site was dark and moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were on average about 3mm in diameter, mostly clear with slightly turbid rings around the outer edges, and relatively uniform in size and appearance.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brightside_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brightside_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brightside_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brightside_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-10T14:39:53-05:00", "date_modified": "2020-07-29T14:12:10-04:00" }, { "phage_name": "Brilian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this bacteriophage is a combination of the names Lillian and Brigid.", "finder_name": "Lillian Granley and Brigid Teaken", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.008805 N", "found_GPS_long": "105.269379 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The dirt sample was found outside of Muenzinger at 10:00 am on 01/30/2024. The sample was dark brown and dry with a few small twigs in it.", "isolation_temperature": 8, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The plaques were relatively small, being 1.5mm in diameter. They were temperate as there was a cloudy halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brilian_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brilian_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Brilian_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T08:57:28-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Brilliant", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Well, phage hunting is simply brilliant. So this phage is called 'Brilliant'!", "finder_name": "Graham Hatfull", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445117 N", "found_GPS_long": "79.952082 W", "found_year": 2023, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Dug from a mulch pile next to Heinz Chapel. Direct plating on M. smegmatis.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques have notable halo's, specially after a couple of days of incubation.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-11-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3028, "finishing_reactions": 0, "genome_length": 68624, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brilliant_Minimal_Final_bXQKG9u.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-01-02T13:06:09-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brilliant_3lMq4qp.gbf", "qced_genbank_file_date": "2024-01-02T13:06:09-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP208926", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brilliant.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BrilliantplaquesThumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-20T15:03:07-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brimmy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named by Nick Ward, after an agent in our favorite game.", "finder_name": "Kassidy Taylor", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.246 N", "found_GPS_long": "80.427 W", "found_year": 2022, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Found next to a dumpster in the Alight Blacksburg apartment complex.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear plaques, small to medium in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-08T09:21:39-05:00", "date_modified": "2024-02-25T15:27:55-05:00" }, { "phage_name": "Brina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ryan Armstrong", "found_city": "Evansville", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "37.971621 N", "found_GPS_long": "87.530422 E", "found_year": 2016, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "Found in a mulch bed between Koch center and Powell residence hall ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small Cloudy Plagues", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brina_EMPic.zip", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-18T06:43:57-05:00", "date_modified": "2020-09-17T14:07:01-04:00" }, { "phage_name": "Bringid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Brad+Ingrid=Bringrid", "finder_name": "Amber Williams", "found_city": "Kenosha", "found_state": "WI", "found_country": "United States of America", "found_GPS_lat": "42.60843 N", "found_GPS_long": "87.87344 W", "found_year": 2019, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": true, "discovery_notes": "Backyard", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "oval-like, long in shape, and fairly wide", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bringid_Plaque.heic", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-11T18:56:37-05:00", "date_modified": "2020-09-17T14:11:23-04:00" }, { "phage_name": "Brink", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kirsten Brink", "found_city": "", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.932128 N", "found_GPS_long": "85.590528 W", "found_year": 2009, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "Soil from next to a drain in a pine forest. Ground littered with silver dollar plants, pinecones, and needles. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2.5mm/turbid/2days/30°C ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brink_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Brink_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Brink_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brink_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brink_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:47-04:00" }, { "phage_name": "Brinkley", "old_names": "", "program": { "short_name": "KBRIN", "program_name": "Kentucky Biomedical Infrastructure Network Small Genomes Discovery Program", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Halsey Parks", "found_city": "Irvine", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.782778 N", "found_GPS_long": "84.157222 W", "found_year": 2017, "p_institution": { "institution_code": "EKEN", "institution_name": "Eastern Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/EasternKentucky_uni_logo.png", "institution_url": "http://www.eku.edu/", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The sample was isolated off the side of the road beside a creek called Station Camp Creek from 2 inches deep. The area was very moist and shaded. ", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage size: \r\n- Collar: 10 nm\r\n- Head: 60 nm\r\n- Tail: 140 nm ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brinkley_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brinkley_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-07T23:52:24-05:00", "date_modified": "2018-07-02T14:19:33-04:00" }, { "phage_name": "Brio", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for a synonym of vigor/spirit/energy", "finder_name": "Colton Whetsell and RyLee Cardiff", "found_city": "Grand Prairie ", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": null, "discovery_notes": "Dry dirt, 60 degrees Fahrenheit air temperature, near a road, low foot traffic, urban, flat. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1/2mm clear and round ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Brio_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-04-21T20:52:03-04:00", "date_modified": "2020-09-17T14:06:22-04:00" }, { "phage_name": "Brioche", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Brioche was named after the tastiest french bread that this world has been blessed with. ", "finder_name": "Megan Ulbrich", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Brioche was isolated from a thin topsoil sample collected in Pittsburgh, PA.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Brioche produces clear plaques that range in size from 1mm to 4mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Both of these phages were isolated at the same university in the same timeframe, and were 100% identical, so this has been marked as a duplicate of Kale.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-07-26T21:55:48-04:00", "date_modified": "2019-03-20T10:23:02-04:00" }, { "phage_name": "BriocheBun", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a type of bread called brioche bread. It is a rich bread and it looks round just like our phage plaque morphology.", "finder_name": "Brian Li and Sierra Zory", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "39.97973 N", "found_GPS_long": "75.12794 W", "found_year": 2021, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "The park soil sample was taken from an elevated enclosure of plants in an urban area. The soil was surrounded by different flowers and plants and a fenced ring approximately 6 cm in height enclosed the plants. There were bees surrounding the plants during the time when the soil was retrieved. The soil was retrieved at 7:00 PM near the edge of the park.", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The titer of our phage was 1.8375 x 10^9 pfu/mL. The phage plaque morphology reveal a consistent pattern of small clear plaques. This means that our phage is most likely a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BriocheBun_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:40:55-05:00", "date_modified": "2022-03-16T11:01:57-04:00" }, { "phage_name": "Brisha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of the scientists names who found the phage together. ", "finder_name": "Sharan Kaur and Brianna Mendoza", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729167 N", "found_GPS_long": "117.166667 W", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Rocky/wet, proximal to a boulder, about 3 inches deep in ground.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-05-01T09:31:05-04:00", "date_modified": "2020-09-17T14:08:54-04:00" }, { "phage_name": "Briskette", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a timeless meat dish.", "finder_name": "Carson Stern, Tyler Morris", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.008856 N", "found_GPS_long": "105.269463 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Briskette_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Briskette_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Briskette_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T10:38:56-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Brisskette", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My last name is Brissette, so i added a \"k\" in the middle to make it sound like a food partnered with my actual last name.", "finder_name": "Ishaan Brissette", "found_city": "Newburgh", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.510305 N", "found_GPS_long": "74.0129 W", "found_year": 2016, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": false, "discovery_notes": "I stepped outside of my college building, on a warm summer day in September, and looked under the first couple of trees i saw. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brisskette_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brisskette_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Brisskette_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brisskette_Plaque_RZiELae.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brisskette_EMPic_ZXC4xux.jpg", "dnam_file": null, "date_added": "2016-11-16T22:29:20-05:00", "date_modified": "2020-09-17T14:07:18-04:00" }, { "phage_name": "BristenKutela", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eric Sprys, Dom Prosser", "found_city": "Greensburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.310856 N", "found_GPS_long": "79.559537 W", "found_year": 2016, "p_institution": { "institution_code": "STHL", "institution_name": "Seton Hill University", "institution_logo": "https://phagesdb.org/media/institutions/setonhill.jpg", "institution_url": "http://www.setonhill.edu/", "institution_city": "Greensburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.310649", "institution_longitude": "-79.55630" }, "enriched_sample": true, "discovery_notes": "Found in mulch outside of Farrell residence hall. Weather conditions were sunny during the day but the sample was collected at night. ", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Turbid\r\nSmall \r\nEnriched ", "lysogeny_notes": "It is a lysogenic phage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BristenKutela_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BristenKutela_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-13T15:10:17-04:00", "date_modified": "2020-09-17T14:07:11-04:00" }, { "phage_name": "Bristles", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Jessica Rose Hunter", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Sample taken from top soil of the trafic circle by UKZN J Block.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Cloudy, opaque plaque. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bristles_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bristles_Plaque_Thumbs.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-10T11:37:55-04:00", "date_modified": "2017-09-24T10:23:31-04:00" }, { "phage_name": "Brita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my dog, Brita", "finder_name": "Morgan Whiticker", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.93262 N", "found_GPS_long": "86.40674 W", "found_year": 2019, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", 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"qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brita_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brita_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Brita_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brita_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brita_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-24T11:48:36-04:00", "date_modified": "2020-09-17T14:11:07-04:00" }, { "phage_name": "BritBrat", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Brittany Dey", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44539 N", "found_GPS_long": "79.960189 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CY", "temperate": true }, "psubcluster": { "subcluster": "CY2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-08-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2549, "finishing_reactions": 0, "genome_length": 55524, "gcpercent": "65.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGTATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU998233", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BritBrat_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BritBrat1.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BritBrat.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BritBrat_Plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/BritBrat_EM_thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/BritBrat_Tl6OsDz.dnam5", "date_added": "2015-08-06T22:52:47-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "BritishU", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BritishU was one of the phages isolated from this particular sample collected by the founder. The plaques from this isolated phage were very large and easy too see. Therefore, they are like the letter u that is commonly found in British and Canadian spellings of words, such as favourite, that are easily noticeable.", "finder_name": "Katelyn R. Macholl", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.3312 N", "found_GPS_long": "76.6213 W", "found_year": 2017, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "This soil sample was discovered and collected on 9/18/17. It was 74 degrees out, and the soil was slightly damp and tended to crumble a little bit. It was discovered on the Johns Hopkins University Homewood campus in back of the Undergraduate Teaching Labs. The soil sample came from the mulch-like dirt surrounding one of the trees here.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques for BritishU are very large and circular. Even when present in a large quantity the plaques that are clustered together remain predominantly large and retain their morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BritishU_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/BritishU_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BritishU_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BritishU_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-04T19:31:51-05:00", "date_modified": "2020-09-17T14:09:24-04:00" }, { "phage_name": "Britney", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Caroline Dulemba", "found_city": "Fort Worth", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.885272 N", "found_GPS_long": "97.453333 W", "found_year": 2011, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Dirt Sample obtained on 9/01/2011 at 10:43 PM\r\nWeather: partly cloudy, no rain; a cool front passed through, temp was 84°F\r\nLocation is near a lake, soil was moist and clay like. To obtain the sample I used a spoon to dig about 1/2 inch into the ground, I filled a 15 mL conical tube full with the sample. The sample was a medium-dark brown color. Where the sample was collected, there was some, but a small amount, of vegetation (grasses and weeds, like dandelions) present on the top of the area from where the sample was collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were pretty consistent in appearance; avg. diameter of each plaque was 1.2 mm, plaques all were clear but became blurrier slightly hazy near the edges of the plaque ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Britney_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Britney_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Britney_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Britney_Plaque_Thumb_gIOkgzQ.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Britney_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-10-26T11:52:30-04:00", "date_modified": "2020-08-07T13:24:29-04:00" }, { "phage_name": "Briton15", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Matthew Stander", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.255 N", "found_GPS_long": "76.713611 W", "found_year": 2015, "p_institution": { "institution_code": "ALBI", "institution_name": "Albion College", "institution_logo": "https://phagesdb.org/media/institutions/albion_college2.png", "institution_url": "http://www.albion.edu/", "institution_city": "Albion", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.243705", "institution_longitude": "-84.74489" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2060, "finishing_reactions": 0, "genome_length": 53032, "gcpercent": "63.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 94, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Briton15_Minimal_Final_ShCbk2w.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-07T23:30:04-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Briton15.gbf", "qced_genbank_file_date": "2019-10-07T23:30:04-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN585999", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Briton15_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Briton15_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Briton15.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Briton15_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Briton15_EMPic_Thumb_cZq0vW2.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Briton15.dnam5", "date_added": "2015-12-06T18:39:05-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Britt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sam, Kara, Maddie, teila", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "America", "found_GPS_lat": "40.449722 N", "found_GPS_long": "79.925556 W", "found_year": 2022, "p_institution": { "institution_code": "CHAT", "institution_name": "Chatham University", "institution_logo": "https://phagesdb.org/media/institutions/chatham_logo_NB0QvGQ.png", "institution_url": "https://www.chatham.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.449259", "institution_longitude": "-79.925094" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Britt_Plaque.HEIC", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Britt_Digest.HEIC", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T14:47:13-05:00", "date_modified": "2022-11-28T14:47:13-05:00" }, { "phage_name": "Brittakah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Brittney -> Britta\r\nRebekah -> kah\r\nThus, Brittakah", "finder_name": "Brittney Wilson, Rebekah Rashford", "found_city": "Catonsville", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.258 N", "found_GPS_long": "76.7165 W", "found_year": 2017, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Temp: 16C\r\nDry soil(more like dirt)\r\nMix of sandy and organic soil\r\nTaken from ~0.5in below surface level\r\nAltitiude: 99.74m", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "0.1cm diameter\r\nFairly round\r\nTurbid\r\nCloudy/jagged edges after 48 hour incubation at 30C", "lysogeny_notes": "N/A", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brittakah_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brittakah_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brittakah-pl.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brittakah.jpg", "dnam_file": null, "date_added": "2017-10-26T23:46:47-04:00", "date_modified": "2020-09-17T14:08:08-04:00" }, { "phage_name": "Brittany", "old_names": "BrittanyPhage", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jennifer Koch", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.43645 N", "found_GPS_long": "78.8746 W", "found_year": 2008, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "From soil behind Hoffman Hall at JMU Harrisonburg Virginia. Next to deciduous tree, in dry soil. Depth 3 inches. 27°C", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Turbid", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/brittany_plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/brittany_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/brittany_plaque_thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2015-04-29T14:32:01-04:00" }, { "phage_name": "Brittney25", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The year it was founded and the first name that came into our minds", "finder_name": "Madison Tomamichel", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Bullseys, small, and hundreds", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-31T07:54:25-04:00", "date_modified": "2025-03-31T07:54:25-04:00" }, { "phage_name": "Brobee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Inspired by one of Kyles favorite Kids shows \"Yo Gabba Gabba\". Brobee is the name of one of the characters in this show.", "finder_name": "John Bacon,Kyle Cayanan", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666738 N", "found_GPS_long": "117.401407 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We \"adopted\" this phage from Professor Hare since our phage did not perform adequately.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our Phages plaques were routinely clear and circular. The edges and outlines were very fine, and the plaques varied in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brobee_Plaque_qPNEUjG.JPG", "em_file": "https://phagesdb.org/media/emPics/Brobee_EMPic_u1EG4Gd.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brobee_Plaque_Thumb1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/C5.jpg", "dnam_file": null, "date_added": "2022-04-12T11:34:06-04:00", "date_modified": "2024-02-25T15:28:08-05:00" }, { "phage_name": "Brocalys", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Bros + Local, add a -ys ending = brocalys", "finder_name": "John Starner and Justin Yen", "found_city": "Montclair", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.865264 N", "found_GPS_long": "74.195513 W", "found_year": 2013, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "In front of Richardson Hall", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-01-28", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 108, "finishing_reactions": 2, "genome_length": 54751, "gcpercent": "61.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGACGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brocalys_Final.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Brocalys_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Brocalys_CoverSheet.docx", "submitted_annotation_date": "2014-05-21T22:27:15-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KU865302", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brocalys_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brocalys_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brocalys.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brocalys_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-11-14T12:40:59-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Broccoli", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nathan Perrine", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.668453 N", "found_GPS_long": "117.403267 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Next to a parking lot, underneath bark, 2 days after rain.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque, less than .1cm, not very turbid", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Broccoli_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Broccoli_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Broccoli_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Broccoli_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-04-10T21:03:08-04:00", "date_modified": "2020-09-17T14:09:00-04:00" }, { "phage_name": "BRock", "old_names": "Streptomyces sp. SFB5A", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "BRock stands for \"Baron Rocks\". This means that Ashley really admires her teacher!", "finder_name": "Ashley Crossman", "found_city": "Bridgewater", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.379099 N", "found_GPS_long": "78.965025 W", "found_year": 2016, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "Phage BRock was isolated from rich compost with Streptomyces sp. SFB5A (Streptomyces nymphaeiformis) as the host. This streptomycete is a polyhydroxybutyrate-degrading bacterium isolated from decaying mulch; its closest relatives by 16S rDNA sequencing analysis are Streptomyces vietnamensis, Streptomyces tanashiensis, Streptomyces litmocidini, and Streptomyces nashvillensis.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BS", "temperate": null }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Clear plaques with somewhat ragged edges, about 0.5-1.0 mm in diameter.", "lysogeny_notes": "Colonies form within clearing zones, suggesting that the phage is capable of lysogeny.", "seq_finished": true, "date_finished": "2016-09-12", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 198, "finishing_reactions": 0, "genome_length": 112523, "gcpercent": "52.3", "end_type": "TREP", "repeat_length": 221, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "This phage genome is submitted to GenBank in the reverse orientation and will not match our files. Note that the Phamerator file has been turned around to fit standard orientation with structural genes in the forward direction.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 188, "num_tRNAs": 29, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sp.", "strain_name": "baron 5a", "strain_species": { "id": 25, "genus": "Streptomyces", "species_name": "sp.", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Steve Baron" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 25, "genus": "Streptomyces", "species_name": "sp.", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX925554", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BRock_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BRock.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BRock_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-09-12T15:07:32-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "BrockGoblin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of a dear friend who passed away combined with the name of his beloved dog.", "finder_name": "Nicole Schulz", "found_city": "Ellsworth", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "44.7322 N", "found_GPS_long": "92.4874 W", "found_year": 2019, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Dry/loose soil underneath a rotting tree.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Pinpoint and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrockGoblin_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BrockGoblin_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BrockGoblin_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BrockGoblin_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-06T14:14:37-05:00", "date_modified": "2020-09-17T14:11:15-04:00" }, { "phage_name": "BRod943", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Beatriz Rodriguez", "found_city": "Miami", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "29.614444 N", "found_GPS_long": "82.358056 W", "found_year": 2013, "p_institution": { "institution_code": "UFLA", "institution_name": "University of Florida", "institution_logo": "https://phagesdb.org/media/institutions/Floridalogo.jpg", "institution_url": "http://www.ufl.edu/", "institution_city": "Gainesville", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "29.643935", "institution_longitude": "-82.35497" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BRod943_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BRod943_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/BRod943_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BRod943_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BRod943_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-06T22:24:18-05:00", "date_modified": "2020-09-17T14:05:55-04:00" }, { "phage_name": "Brode", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brian Vilayvanh", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.236623 N", "found_GPS_long": "97.156999 W", "found_year": 2014, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-12T23:51:29-05:00", "date_modified": "2025-04-04T11:37:36-04:00" }, { "phage_name": "Broderick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is tough just like the name Broderick.", "finder_name": "Teagan McCarthy", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.9938 N", "found_GPS_long": "75.2388 E", "found_year": 2018, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Found in slightly moist soil under a bush after two days of hot weather. The temperature at the time of discovery was 33 degrees Celsius and humidity was 53%. The sample Broderick was found in came from a depth of approximately 6 cm into the ground. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Clear plaques which varied from 1-3 mm across (appeared larger after two days of incubation versus one)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Broderick_Plaque_Bir4CAl.pdf", "em_file": "https://phagesdb.org/media/emPics/Broderick_EMPic_k9uPBRU.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Broderick_Digest_4xRSLoG.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Broderick_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Broderick_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-30T16:10:16-04:00", "date_modified": "2020-09-17T14:10:15-04:00" }, { "phage_name": "Brody", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Megan Draheim", "found_city": "Duluth", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": null, "discovery_notes": "Sample was obtained on 9/20/2012 at 12:20pm. Outdoor temp was 51 degrees F. Sample was taken from the surface of the soil. Soil features were moist with slight foot traffic located roughly 2 feet off of a wooded hiking trail.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "plaques were small and temperate in appearance, with an average diameter of 3mm.", "lysogeny_notes": "temperate ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brody_Plaque.docx", "em_file": "https://phagesdb.org/media/emPics/Brody_EMPic.docx", "digest_file": "https://phagesdb.org/media/digestPics/Brody_Digest.docx", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-29T13:11:42-05:00", "date_modified": "2017-09-12T10:27:22-04:00" }, { "phage_name": "Broe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Veronica Smith", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "Taken 1 inch deep from damp soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium-sized plaques grew after 48 hours at 37°C. The plaques had halos around them", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Broe_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-02-16T07:20:32-05:00", "date_modified": "2017-09-12T10:21:48-04:00" }, { "phage_name": "BroFist", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage is named after a character from Stephen L. Burn's novel Flesh and Silver who was an expert at 'phage warfare.'", "finder_name": "Julia Schuman", "found_city": "Holland", "found_state": "MI", "found_country": "Canada", "found_GPS_lat": "42.787778 N", "found_GPS_long": "86.101389 W", "found_year": 2012, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "Found in mulching wood chips and pine needles, near orange, finger-like mushrooms.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/BroFist_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/BroFist_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/BroFist_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-12-07T15:12:56-05:00", "date_modified": "2025-08-06T10:59:55-04:00" }, { "phage_name": "BrokenSpoon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "When we picked our phage a small part of the spoon we used broke because the ground was so hard; hence the name broken spoon.", "finder_name": "MaCaila Beck and Sarah Ott", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66747 N", "found_GPS_long": "117.40031 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found this phage in the northeast corner of Foley Lawn at Gonzaga University. It was cold, damp, and very hard ground.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques were lytic. They are clear, clean cut, and small plaques. The diameter is 1.9mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrokenSpoon_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/BrokenSpoon_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/phage_200_by_200.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/TEM_SOMB.jpg", "dnam_file": null, "date_added": "2022-04-12T11:24:46-04:00", "date_modified": "2024-02-25T15:28:08-05:00" }, { "phage_name": "BrokMonster", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We had a class vote on what the name should be.", "finder_name": "Francois Boney", "found_city": "Monmouth", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "40.91237 N", "found_GPS_long": "90.6341 W", "found_year": 2020, "p_institution": { "institution_code": "MMTH", "institution_name": "Monmouth College", "institution_logo": "https://phagesdb.org/media/institutions/MMTH.png", "institution_url": "https://www.monmouthcollege.edu/", "institution_city": "Monmouth", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Collected soil sample in the Monmouth College Educational Garden in the broccoli bed.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Very large plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 222, "finishing_reactions": 0, "genome_length": 17433, "gcpercent": "68.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BrokMonster_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BrokMonster_Minimal_Final_1fAr8RX.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/BrokMonster_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/BrokMonster_CoverSheet.pdf", "submitted_annotation_date": "2021-04-19T13:24:44-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BrokMonster.gbf", "qced_genbank_file_date": "2021-04-19T13:24:44-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ005678", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrokMonster_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BrokMonster.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BrokMonster_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-03T11:41:32-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brolasi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A mixture of the two researcher's first names.", "finder_name": "Brooke Transue and Tulasi Syamala", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4436 N", "found_GPS_long": "79.952556 W", "found_year": 2021, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Discovered in the garden behind the Cathedral of Learning which is on Fifth Avenue, Pittsburgh, PA 15123.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-09-30T10:58:14-04:00", "date_modified": "2022-03-16T11:02:23-04:00" }, { "phage_name": "BromCom", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our favorite movie genre and an allusion to its discovery site.", "finder_name": "Lily Forman and Amanda Downing", "found_city": "Somerville", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.0 N", "found_GPS_long": "71.0 W", "found_year": 2021, "p_institution": { "institution_code": "TFTS", "institution_name": "Tufts University", "institution_logo": "https://phagesdb.org/media/institutions/Tufts_univ_blue_KocimAw.png", "institution_url": "https://www.tufts.edu/", "institution_city": "Medford", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found near an off-campus house near Tufts University, on Bromfield Road. The sample was collected from dry soil, about 1 inch below the surface.", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are both clear and turbid, some having a cloudy halo surrounding a clear spot.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BromCom_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BromCom_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BromCom_plaques_thumbnail.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BromCom_thumnail.png", "dnam_file": null, "date_added": "2021-10-29T14:42:35-04:00", "date_modified": "2022-03-16T11:01:57-04:00" }, { "phage_name": "Bromden", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the main character in One Flew Over the Cuckoo's Nest, written by Ken Kesey. Chief Bromden is the only character that escaped the insane asylum by checking himself out. The other characters either remained in the asylum or died in there. He was the one that got out, much like my phage.", "finder_name": "Hannah E Cizauskas", "found_city": "Westland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.2896 N", "found_GPS_long": "83.4289 W", "found_year": 2017, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "Slightly moist soil from a pumpkin patch that was composted with grass clippings.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L4" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are circular, clear, and .5mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1973, "finishing_reactions": 0, "genome_length": 70183, "gcpercent": "58.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "Despite a high level of coverage, the overhang was not present in the sequencing reads, and so it was inferred from highly similar genomes. Sanger sequencing will be attempted to cover this region. ", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 118, "num_tRNAs": 13, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bromden_CompleteNotes_Wn0JfSF.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Bromden_Minimal_Final_CLmcC4k.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Bromden_Authors_Cm2AWgx.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Bromden_CoverSheet_eMMYPa7.pdf", "submitted_annotation_date": "2018-06-28T16:22:58-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Bromden_flat.txt", "qced_genbank_file_date": "2018-06-28T16:22:58-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH576973", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bromden_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bromden_EMPic_py8kPNH.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bromden_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Bromden.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Bromden_EMPic_thumb.jpg", "dnam_file": null, "date_added": "2017-11-02T18:19:02-04:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "BronBron", "old_names": "LAbron", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "LeBron James left the Cleveland Cavaliers this summer to join the Los Angeles Lakers and therefore is now nicknamed LAbron. ", "finder_name": "Ryan Nickolette", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.501389 N", "found_GPS_long": "84.726111 W", "found_year": 2018, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": false, "discovery_notes": "Found a stream near Peabody Hall on Western Campus. The creek was still and the soil was moist higher up on the bank. The bank was where the sample was taken from. The creek was connected to a small pond as well. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-23T13:37:40-04:00", "date_modified": "2020-09-17T14:09:36-04:00" }, { "phage_name": "BronBron6", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Seth Banks", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.748403 N", "found_GPS_long": "84.414445 W", "found_year": 2011, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Clay, 3 ml, 86 degrees Fahrenheit, flower base ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BronBron6_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BronBron6_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-12-04T10:58:09-05:00", "date_modified": "2017-09-12T10:21:48-04:00" }, { "phage_name": "BronchoBirddie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage came from Oak Tree Country Club, found in a small creek on the actual golf course. In between holes 8 East and 3 West.", "finder_name": "Shelby Braley and Brennyn Evans", "found_city": "Edmond", "found_state": "OK", "found_country": "USA", "found_GPS_lat": "35.7125 N", "found_GPS_long": "97.4907 W", "found_year": 2020, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil was slightly damp, had a very distinct red color, and was located out of direct sunlight. The soil sample was collected on a golf course, in a small creek, near a bridge. The temperature of the soil was 80 degrees C and had an abundance of wildlife at the collection site. Sand, dirt, and other large particles were obtained in the soil sample.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are typically larger, ranging from about 0.2-0.4mm in diameter on average. They are not turbid, instead create clear plaque zones. They are typically completely round and do not have any jagged edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BronchoBirddie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/BronchoBirddie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BronchoBirddie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/BronchoBirddie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-11-13T12:05:02-05:00", "date_modified": "2021-05-25T13:14:23-04:00" }, { "phage_name": "Bronco", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Bronco\" was inspired by the Denver Broncos, the discoverer's favorite football team.", "finder_name": "Mallory Myers", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.543518 N", "found_GPS_long": "97.119773 W", "found_year": 2012, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Soil sample\r\n5 cm deep\r\nVery moist\r\nApprox. 80 deg. Fahrenheit", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Approx. 2-3 mm diameter\r\nClear center; turbid exterior", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bronco_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bronco_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Bronco_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bronco_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Bronco_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-12-06T21:55:28-05:00", "date_modified": "2017-09-12T10:27:21-04:00" }, { "phage_name": "BronGOAT", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Inspired from previous phages with \"Lebron\" in the name", "finder_name": "Nikita Venkatasamy", "found_city": "Pittsburgh", "found_state": "PA", "found_country": 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"strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bronty_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-20T15:02:41-05:00", "date_modified": "2024-02-25T15:28:33-05:00" }, { "phage_name": "Bronwen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "group member Megan's middle name", "finder_name": "Megan, Martina, Carla, Christa", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.390865 N", "found_GPS_long": "72.527021 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "near the Integrative Learning Center at UMass Amherst", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "round shape, circular blurry edges, 1-2 mm in size, slight bullseye", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/bronwen_empic_thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-12T10:54:07-04:00", "date_modified": "2024-02-25T15:28:26-05:00" }, { "phage_name": "Bronx", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this bacteriophage after my home in New York.", "finder_name": "Brianna Raven Henry", "found_city": "Washington", "found_state": "DC", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "The sample was collected in the Health Science Library courtyard of Howard University. The soil sample was collected using a 50 mL conical tube, a plastic spoon, and a ruler. The spoon was used to dig 1.5 centimeters into the ground; 15 mL of soil was collected and capped, labeled with the initials, date, and location, and brought back for the next experiment. The GPS coordinates (38° 55' 10\" N, 77° 1' 10\" W) and weather (approximately 76 °F) were both recorded as well as the characteristics of the soil sample (dry and grainy).", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques formed by this phage are generally 0.20-0.25 centimeters in size and have a slightly oval shape.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bronx_Plaque.HEIC", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Bronx_Digest.HEIC", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bronx_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-24T10:22:21-04:00", "date_modified": "2020-09-17T14:11:02-04:00" }, { "phage_name": "BronxBay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our friend, Blessing's nickname", "finder_name": "Ayisha Adekanmbi, Gabrielle Carbonel", "found_city": "Jersey City", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.72037 N", "found_GPS_long": "74.039622 W", "found_year": 2021, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "We found this in the soil by Nyack College Dorms in Jersey City.", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "AW", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Tiny plaques 1 mm in size with tiny rings present around plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-09-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 89, "finishing_reactions": 0, "genome_length": 54510, "gcpercent": "51.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGACCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BronxBay_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-01-15T14:52:34-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BronxBay_flat.txt", "qced_genbank_file_date": "2024-01-15T14:52:34-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP208937", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BussyBronx_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BronxBay.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-17T10:35:55-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Bronxji", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage originated from a mix of two of my puppies' names. They are brothers born on the same day, one named Bronx and the other named Benji. These came together to make the name I intend to use for my phage: Bronxji.", "finder_name": "Jalyne Perry", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4463 N", "found_GPS_long": "79.9572 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This soil sample was collected from a grassy area above Chevron Science Center at the University of Pittsburgh. The weather was breezy, and the sun was shining on the area but some of the surrounding was in the shade. There were squirrels running through the area and a couple of trees and weeds growing in the surrounding area. Most of the dirt was fairly moist but some of the surrounding dirt looked to be dry.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology of phage Bronxji is turbid and circular, with slightly rigid edges. Plaques vary in size from 2-3mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Bronxji_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Bronxji_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Bronxji_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Bronxji_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Bronxji_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-10-24T11:23:19-04:00", "date_modified": "2020-09-17T14:11:57-04:00" }, { "phage_name": "Brooke", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chasity Brower", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "taken half an inch deep", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear plaques grew after 48 hours at 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Brooke_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Brooke_Digest.tiff", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Brooke_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-02-16T06:44:00-05:00", "date_modified": "2017-09-12T10:21:48-04:00" }, { "phage_name": "BrookeKathleen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for my phage came from my roommate", "finder_name": "Delaney Rugan", "found_city": "Claflin", "found_state": "KS", "found_country": "United States", "found_GPS_lat": "38.49224 N", "found_GPS_long": "98.5889 W", "found_year": 2023, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Soil was wet, sandy, and was taken about 1 1/2 inches below surface. Collected from a garden bed", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small, circular, and clear", "lysogeny_notes": "Positive", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BrookeKathleen_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/BrookeKathleen_EMPic.pdf", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-20T09:40:08-04:00", "date_modified": "2024-02-25T15:28:24-05:00" }, { "phage_name": "Brookemade", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I chose Made By Brooke so I could easily remember it. I was not sure what other name to come up with that would represent myself.", "finder_name": "Brooke", "found_city": "Frostbug", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.65 N", "found_GPS_long": "78.91 W", "found_year": 2024, "p_institution": { "institution_code": "ALGY", "institution_name": "Allegany College of Maryland", "institution_logo": "https://phagesdb.org/media/institutions/allegany2.jpg", "institution_url": "", "institution_city": "Cumberland", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "I used the lysate that was collected at Mt.pleasant park in Frostburg MD. I flooded the plate and using that to find DNA.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "My plaques are measuring between 4mm-12mm. Some are tiny and others are large. The majority of them are large plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brookemade_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Brookemade_EMPic.PNG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/thumbnail_usNy5lr.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/IMG_6698.jpg", "dnam_file": null, "date_added": "2024-10-30T08:52:37-04:00", "date_modified": "2025-04-04T11:37:22-04:00" }, { "phage_name": "Brookers", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Megan Howard was collecting multiple samples, one included outside of an ice cream place called \"Brookers\". Megan liked the name and decided to stick with it, even though her phage was not found there.", "finder_name": "Megan Howard", "found_city": "Provo", "found_state": "UT", "found_country": "USA", "found_GPS_lat": "40.239736 N", "found_GPS_long": "111.657426 W", "found_year": 2024, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": false, "discovery_notes": "Soil sample was taken from a terrarium, however soil from terrarium was taken from GPS coordinates originally. When sample of soil was taken from terrarium, it was at room temperature as noted above.", "isolation_temperature": 21, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Phage during isolation has taken form in two ways, smaller plaques, and bigger plaques. The original phage was larger, about 5mm in radius.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-02-13", "seq_facility": { "short_name": "CD", "facility_name": "CD Genomics", "contact_person": "", "shipping_address": "", "facility_website": "https://www.cd-genomics.com/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4630, "finishing_reactions": 0, "genome_length": 56569, "gcpercent": "61.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brookers_CompleteNotes.pdf", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Brookers_Minimal_Final_YxldLd9.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Brookers_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Brookers_CoverSheet.pdf", "submitted_annotation_date": "2025-08-04T12:12:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Brookers_flat.txt", "qced_genbank_file_date": "2025-08-04T12:12:00-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PX121525", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brookers_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brookers_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Brookers.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T13:29:57-05:00", "date_modified": "2025-09-13T06:41:11-04:00" }, { "phage_name": "Brookie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We just decided to name our phage Brookie. It works well with the phage, because it was found in a river.", "finder_name": "Jacob Richard and Joshua Chouinard", "found_city": "Beaufort County", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.676777 N", "found_GPS_long": "80.756768 W", "found_year": 2017, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": true, "discovery_notes": "Phage found in the Combahee River in Beaufort County, South Carolina. Sediment and Water Sample.\r\nPhage YourAdopted was isolated from same river.\r\nThe sample was found by Kim Borges, but given to Jacob Richard and Joshua Chouinard to work with.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brookie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Brookie_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brookie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brookie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T21:02:19-05:00", "date_modified": "2020-09-17T14:08:47-04:00" }, { "phage_name": "Brooklyn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lijie Chen & Martha Dua-Awereh", "found_city": "Brooklyn", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.60174 N", "found_GPS_long": "73.93079 W", "found_year": 2010, "p_institution": { "institution_code": "BROO", "institution_name": "Brooklyn College", "institution_logo": "https://phagesdb.org/media/institutions/BrooklynCollege-01.jpg", "institution_url": "http://www.brooklyn.cuny.edu/", "institution_city": "Brooklyn", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.631251", "institution_longitude": "-73.95439" }, "enriched_sample": true, "discovery_notes": "Phage was located in a water/soil mixture taken 8 inches from the shoreline of the the Marine Park Salt Marsh, in shallow water and about 10 feet from phragmites reeds. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "A lytic phage named Brooklyn was isolated from Marine Park marsh soil sample by Martha B. Dua-Awereh, and purified by Lijie Chen. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Brooklyn_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Brooklyn_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Brooklyn_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Brooklyn_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Brooklyn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-02-02T03:03:08-05:00", "date_modified": "2017-11-22T12:08:47-05:00" }, { "phage_name": "BroPhlow", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Joey and Matt are bros and they both have the flow (long hair) so they decided to name their phage \"Brofage Phlowfage\" but that was too long for the name box.", "finder_name": "Matt Savage & Joey Dean", "found_city": "Arkadelphia", "found_state": "AR", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "Joey and Matt discovered this phage beside a puddle of stagnant water. It had been about 100 degrees the week leading up to discovery with zero precipitation. The sample was taken three centimeters deep.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were about 3 mm in diameter and were cloudy with non-distinct edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-16T16:59:01-05:00", "date_modified": "2020-09-17T14:06:31-04:00" }, { "phage_name": "BroPlease", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name came from the fact that I had numerous struggles with obtaining and isolating the phage. Both of my soil samples yielded no sign of phage (so I had to use the TA's soil sample), and my plate titers kept having to get readjusted due to there not being a high enough plate titer.", "finder_name": "Faith LaBry & Ahmad Sulaiman", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.254578 N", "found_GPS_long": "97.146434 W", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "-Obtained from my TA's backyard\r\n-Dug one inch under a grassy surface\r\n-Partially cloudy outside", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD4" }, "morphotype": "", "plaque_notes": "Diameter: ≤1mm (ranging from pinpoint to small)\r\nMore heterogeneous due to diversity in plaque sizes\r\nSlightly more temperate (cloudy) over lytic (clear) \r\nMost plaques have a small clear center and turbid edges, sort of like a bullseye or large halo\r\nOnly the smallest plaques are clear", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-12-06", "seq_facility": null, "seq_method": null, "coverage": 656, "finishing_reactions": 0, "genome_length": 50645, "gcpercent": "67.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAGCCGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/BroPlease_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-05-12T12:28:02-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/BroPlease_flat.txt", "qced_genbank_file_date": "2022-05-12T12:28:02-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON526970", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/BroPlease_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/BroPlease_Digest_xGos42c.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/BroPlease.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/BroPlease_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-15T11:16:07-04:00", "date_modified": "2025-09-13T06:41:11-04:00" } ] }
