| Detailed Information for Phage ArchiDore | |
| Discovery Information | |
| Isolation Host | Gordonia terrae CAG3 |
| Found By | Sabrena Munoz |
| Year Found | 2024 |
| Location Found | Manhattan, KS United States |
| Finding Institution | Kansas State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 39.1294 N, 96.4411 W Map |
| Discovery Notes | The phage sample was found in soil from Manhattan, KS. The soil was extremely moist and was collected at 17:22. Host range was negative for both G. Lacunae and G. Rubripertincta. |
| Naming Notes | I combined the names of my dogs to name my phage. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 15, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Single-end reads |
| Read Length | 100 bp |
| Approximate Shotgun Coverage | 8956 |
| Genome length (bp) | 51703 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TGCCGAGGTA |
| GC Content | 66.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DW |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Lysogeny Notes | Based on the morphology and lysogeny testing of my phage, we have confirmed that ArchiDore is a lysogenic phage. |
| Other Cluster Members | |
| Annotating Institution | Kansas State University |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques of ArchiDore have a transparent appearance. These plaques did not have a distinct border around the plaques but had a hazy halo around them. |
| Morphotype | Siphoviridae |
| Number of Genes | 75 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewArchiDore_1 ArchiDore_2 ArchiDore_3 ArchiDore_4 ArchiDore_5 ArchiDore_6 ArchiDore_7 ArchiDore_8 ArchiDore_9 ArchiDore_10 ArchiDore_11 ArchiDore_12 ArchiDore_13 ArchiDore_14 ArchiDore_15 ArchiDore_16 ArchiDore_17 ArchiDore_18 ArchiDore_19 ArchiDore_20 ArchiDore_21 ArchiDore_22 ArchiDore_23 ArchiDore_24 ArchiDore_25 ArchiDore_26 ArchiDore_27 ArchiDore_28 ArchiDore_29 ArchiDore_30 ArchiDore_31 ArchiDore_32 ArchiDore_33 ArchiDore_34 ArchiDore_35 ArchiDore_36 ArchiDore_37 ArchiDore_38 ArchiDore_39 ArchiDore_40 ArchiDore_41 ArchiDore_42 ArchiDore_43 ArchiDore_44 ArchiDore_45 ArchiDore_46 ArchiDore_47 ArchiDore_48 ArchiDore_49 ArchiDore_50 ArchiDore_51 ArchiDore_52 ArchiDore_53 ArchiDore_54 ArchiDore_55 ArchiDore_56 ArchiDore_57 ArchiDore_58 ArchiDore_59 ArchiDore_60 ArchiDore_61 ArchiDore_62 ArchiDore_63 ArchiDore_64 ArchiDore_65 ArchiDore_66 ArchiDore_67 ArchiDore_68 ArchiDore_69 ArchiDore_70 ArchiDore_71 ArchiDore_72 ArchiDore_73 ArchiDore_74 ArchiDore_75 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PV876927 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 6.333 x 10^9 |
| Pitt Freezer Box# | 204 |
| Pitt Freezer Box Grid# | C12 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
