Gordonia phage ArchiDore
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Detailed Information for Phage ArchiDore
Discovery Information
Isolation HostGordonia terrae CAG3
Found BySabrena Munoz
Year Found2024
Location FoundManhattan, KS United States
Finding InstitutionKansas State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature25°C
GPS Coordinates39.1294 N, 96.4411 W Map
Discovery NotesThe phage sample was found in soil from Manhattan, KS. The soil was extremely moist and was collected at 17:22. Host range was negative for both G. Lacunae and G. Rubripertincta.
Naming NotesI combined the names of my dogs to name my phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage8956
Genome length (bp)51703
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGAGGTA
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDW
Subcluster--
Cluster Life CycleUnknown
Lysogeny NotesBased on the morphology and lysogeny testing of my phage, we have confirmed that ArchiDore is a lysogenic phage.
Other Cluster Members
Annotating InstitutionKansas State University
Annotation StatusBeing Annotated (Expected completion by 5/1/2025)
Plaque NotesThe plaques of ArchiDore have a transparent appearance. These plaques did not have a distinct border around the plaques but had a hazy halo around them.
MorphotypeSiphoviridae
Number of Genes75
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
SEA Lysate Titer 6.333 x 10^9
Available Files
Plaque PictureDownload
EM PictureDownload