Detailed Information for Phage ArchiDore | |
Discovery Information | |
Isolation Host | Gordonia terrae CAG3 |
Found By | Sabrena Munoz |
Year Found | 2024 |
Location Found | Manhattan, KS United States |
Finding Institution | Kansas State University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | 25°C |
GPS Coordinates | 39.1294 N, 96.4411 W Map |
Discovery Notes | The phage sample was found in soil from Manhattan, KS. The soil was extremely moist and was collected at 17:22. Host range was negative for both G. Lacunae and G. Rubripertincta. |
Naming Notes | I combined the names of my dogs to name my phage. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 15, 2025 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina NextSeq 1000 |
Read Type | Single-end reads |
Read Length | 100 bp |
Approximate Shotgun Coverage | 8956 |
Genome length (bp) | 51703 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TGCCGAGGTA |
GC Content | 66.9% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | DW |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Lysogeny Notes | Based on the morphology and lysogeny testing of my phage, we have confirmed that ArchiDore is a lysogenic phage. |
Other Cluster Members | |
Annotating Institution | Kansas State University |
Annotation Status | Being Annotated (Expected completion by 5/1/2025) |
Plaque Notes | The plaques of ArchiDore have a transparent appearance. These plaques did not have a distinct border around the plaques but had a hazy halo around them. |
Morphotype | Siphoviridae |
Number of Genes | 75 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
Click to ViewArchiDore_1 ArchiDore_2 ArchiDore_3 ArchiDore_4 ArchiDore_5 ArchiDore_6 ArchiDore_7 ArchiDore_8 ArchiDore_9 ArchiDore_10 ArchiDore_11 ArchiDore_12 ArchiDore_13 ArchiDore_14 ArchiDore_15 ArchiDore_16 ArchiDore_17 ArchiDore_18 ArchiDore_19 ArchiDore_20 ArchiDore_21 ArchiDore_22 ArchiDore_23 ArchiDore_24 ArchiDore_25 ArchiDore_26 ArchiDore_27 ArchiDore_28 ArchiDore_29 ArchiDore_30 ArchiDore_31 ArchiDore_32 ArchiDore_33 ArchiDore_34 ArchiDore_35 ArchiDore_36 ArchiDore_37 ArchiDore_38 ArchiDore_39 ArchiDore_40 ArchiDore_41 ArchiDore_42 ArchiDore_43 ArchiDore_44 ArchiDore_45 ArchiDore_46 ArchiDore_47 ArchiDore_48 ArchiDore_49 ArchiDore_50 ArchiDore_51 ArchiDore_52 ArchiDore_53 ArchiDore_54 ArchiDore_55 ArchiDore_56 ArchiDore_57 ArchiDore_58 ArchiDore_59 ArchiDore_60 ArchiDore_61 ArchiDore_62 ArchiDore_63 ArchiDore_64 ArchiDore_65 ArchiDore_66 ArchiDore_67 ArchiDore_68 ArchiDore_69 ArchiDore_70 ArchiDore_71 ArchiDore_72 ArchiDore_73 ArchiDore_74 ArchiDore_75 |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Not in Pitt Archives |
SEA Lysate Titer | 6.333 x 10^9 |
Available Files | |
Plaque Picture | Download |
EM Picture | Download |