Available Documents

Dedrick et al. (2021a) mBio, M. abscessus Prophage/Plasmid Mobilome Paper Materials

Figure S1. Integration-dependent immunity systems
Figure S2. Genome organization of prophiGD17-2, Cluster MabA1
Figure S3. Genome comparisons of Cluster MabA1
Figure S4. Genome organization of prophiGD02-2, Cluster MabA2
Figure S5. Genome comparisons of Cluster MabA2
...plus 50 more. CLICK HERE TO SEE ALL.

Dedrick et al. (2021b) mBio, M. abscessus Morphotype and Phage Susceptibility Paper Materials

Figure S1. Genome organization of phiGD20-1 (MabA1)
Figure S2. Genome organization of phiGD21-1 (MabB)
Figure S3. Genome organization of phiGD57-1 (MabC)
Figure S4. Genome organization of phiGD17-1 (MabD)
Figure S5. Genome organization of phiGD24-3 (MabJ)
...plus 12 more. CLICK HERE TO SEE ALL.

Message in a Bottle

Message in a Bottle, Issue 1, September 2014
Message in a Bottle, Issue 2, February 2015
Message in a Bottle, Issue 3, May 2015
Message in a Bottle, Issue 4, June 2015
Message in a Bottle, Issue 5, September 2015

2014 In Silico Workshop

In Silico Workshop Agenda 2014
Software Installation 2014
Sheen BLASTed .dnam5 file
Sheen files for Merge 1
Merged_Wenesday_1:45
...plus 8 more. CLICK HERE TO SEE ALL.

Alternative Hosts

Alternative Host Information

Classroom Powerpoints

Genome Sequencing, Oct 2012
Genome Sequencing, June 2012
Virutal Machines Explained

Finishing

Powerpoint: Phage Genome Ends
Diagram: Comparison of 3' and 5' overhangs in Sequencing Data

Software Guides

DNA Master Installation Guide
DNA Master Annotation Guide_Revised for November 2013
DNA Master Quick-Start Guide
What's New in the Annotation Guide for 2014
Phage Enzyme Tool Paper
...plus 6 more. CLICK HERE TO SEE ALL.

Sample Files

AlanGrant Reads

Annotation Resources

A Collection of Annotated Maps 2013
Etude Annotation
References for Gene Functions
Importing and Using A Local Blast in DNA Master
Importable Local BLAST Database
...plus 2 more. CLICK HERE TO SEE ALL.

High School Phagehunting

2012 Info Session I - Lytic vs Lysogenic Cycles

2013 In Silico Workshop

EChild DNA Master Files
EChild Round 2 DNA Master Files
Welkin's Merged File
Introduction to Annotation
Echild Final DNA Master File
...plus 2 more. CLICK HERE TO SEE ALL.