| Detailed Information for Phage Bioscum | |
| Discovery Information | |
| Isolation Host | Streptomyces venezuelae ATCC 10712 |
| Found By | Rusty Hartman |
| Year Found | 2015 |
| Location Found | Canyon, TX USA |
| Finding Institution | University of North Texas |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 34.972256 N, 101.929614 W Map |
| Discovery Notes | The soil was collected on August 14th 2015 during 1:18pm. The temperature was 91 degrees Fahrenheit. The sample was moist and clumpy. |
| Naming Notes | The name of this came from the scum filled soil near a pond. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 16, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 2424 |
| Genome length (bp) | 37830 |
| Character of genome ends | Circularly Permuted |
| GC Content | 72.3% |
| Sequencing Notes | A small subset of the reads in this sample (~3%) were from a different phage, Chymera. Probably sample contamination. |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BC |
| Subcluster | BC3 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques are about one millimeter in diameter. The characteristics are clear and round. |
| Number of Genes | 54 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBioscum_1 Bioscum_2 Bioscum_3 Bioscum_4 Bioscum_5 Bioscum_6 Bioscum_7 Bioscum_8 Bioscum_9 Bioscum_10 Bioscum_11 Bioscum_12 Bioscum_13 Bioscum_14 Bioscum_15 Bioscum_16 Bioscum_17 Bioscum_18 Bioscum_19 Bioscum_20 Bioscum_21 Bioscum_22 Bioscum_23 Bioscum_24 Bioscum_25 Bioscum_26 — tRNA Bioscum_27 Bioscum_28 Bioscum_29 Bioscum_30 Bioscum_31 Bioscum_32 Bioscum_33 Bioscum_34 Bioscum_35 Bioscum_36 Bioscum_37 Bioscum_38 Bioscum_39 Bioscum_40 Bioscum_41 Bioscum_42 Bioscum_43 Bioscum_44 Bioscum_45 Bioscum_46 Bioscum_47 Bioscum_48 Bioscum_49 Bioscum_50 Bioscum_51 Bioscum_52 Bioscum_53 Bioscum_54 Bioscum_55 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KY092483 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.4 x 10^9 pfu/mL |
| Date of SEA Lysate Titering | Nov 15, 2015 |
| Pitt Freezer Box# | 20 |
| Pitt Freezer Box Grid# | C6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
