The Actinobacteriophage Database | Phage DanielleIgnace

Arthrobacter phage DanielleIgnace

Add or modify phage thumbnail images to appear at the top of this page.

Know something about this phage that we don't? Modify its data.

Detailed Information for Phage DanielleIgnace
Discovery Information
Isolation Host	Arthrobacter sp. 68b
Found By	Juliet Jarrell and Zoe Birnhak
Year Found	2017
Location Found	Northampton, MA USA
Finding Institution	Smith College
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Unknown
Isolation Temperature	Not entered
GPS Coordinates	42.315442, -72.642090 Map
Discovery Notes	Location: about 5 feet from pond at Lyman Plant House, Smith College campus Soil depth: 4-5 inches below the surface, underneath grass Outside conditions: Temp 68º F, overcast, humid, cool Soil information: medium brown, slightly damp, sandy/fine-grain texture, small particles, a bit muddy, lots of organic matter present (dead bugs, debris)
Naming Notes	The best (and only) bio 132 professor at Smith College! #danielleigancelab #danielleignacefanclub hit her with the twitter follow @ignacelab
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Feb 8, 2018
Sequencing Facility	Smith College
Shotgun Sequencing Method	Illumina
Approximate Shotgun Coverage	522
Genome length (bp)	61275
Character of genome ends	Unknown
GC Content	62.9%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	AT
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View BeatusComedenti DanielleIgnace KellEzio Kitkat
Annotating Institution	Cabrini University
Annotation Status	In GenBank
Plaque Notes	small, circular, clear plaques relatively few with no overlap between plaques clear plaques are indicative of lytic phage
Morphotype	Siphoviridae
Number of Genes	100
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View DanielleIgnace_1 DanielleIgnace_2 DanielleIgnace_3 DanielleIgnace_4 (terminase large subunit, ATPase domain) DanielleIgnace_5 (RusA-like resolvase) DanielleIgnace_6 DanielleIgnace_7 DanielleIgnace_8 (terminase large subunit, nuclease domain) DanielleIgnace_9 DanielleIgnace_10 (endolysin) DanielleIgnace_11 (portal protein) DanielleIgnace_12 DanielleIgnace_13 (capsid maturation protease) DanielleIgnace_14 DanielleIgnace_15 DanielleIgnace_16 (capsid decoration protein) DanielleIgnace_17 (major capsid protein) DanielleIgnace_18 DanielleIgnace_19 DanielleIgnace_20 DanielleIgnace_21 (glycosyltransferase) DanielleIgnace_22 DanielleIgnace_23 DanielleIgnace_24 (tail assembly chaperone) DanielleIgnace_25 (tail assembly chaperone) DanielleIgnace_26 (tape measure protein) DanielleIgnace_27 (minor tail protein) DanielleIgnace_28 (minor tail protein) DanielleIgnace_29 DanielleIgnace_30 DanielleIgnace_31 DanielleIgnace_32 DanielleIgnace_33 DanielleIgnace_34 DanielleIgnace_35 DanielleIgnace_36 DanielleIgnace_37 DanielleIgnace_38 DanielleIgnace_39 (adenylyltransferase) DanielleIgnace_40 DanielleIgnace_41 DanielleIgnace_42 DanielleIgnace_43 DanielleIgnace_44 DanielleIgnace_45 DanielleIgnace_46 DanielleIgnace_47 DanielleIgnace_48 DanielleIgnace_49 (histidine kinase) DanielleIgnace_50 DanielleIgnace_51 DanielleIgnace_52 DanielleIgnace_53 DanielleIgnace_54 DanielleIgnace_55 DanielleIgnace_56 DanielleIgnace_57 DanielleIgnace_58 (exonuclease) DanielleIgnace_59 DanielleIgnace_60 DanielleIgnace_61 DanielleIgnace_62 DanielleIgnace_63 DanielleIgnace_64 DanielleIgnace_65 DanielleIgnace_66 DanielleIgnace_67 DanielleIgnace_68 DanielleIgnace_69 DanielleIgnace_70 DanielleIgnace_71 DanielleIgnace_72 DanielleIgnace_73 DanielleIgnace_74 DanielleIgnace_75 DanielleIgnace_76 (single-stranded DNA-binding protein) DanielleIgnace_77 DanielleIgnace_78 (RecB-like exonuclease/helicase) DanielleIgnace_79 DanielleIgnace_80 (DNA helicase) DanielleIgnace_81 DanielleIgnace_82 DanielleIgnace_83 DanielleIgnace_84 DanielleIgnace_85 (HNH endonuclease) DanielleIgnace_86 DanielleIgnace_87 DanielleIgnace_88 DanielleIgnace_89 DanielleIgnace_90 (AAA-ATPase) DanielleIgnace_91 (glycosyltransferase) DanielleIgnace_92 (hydrolase) DanielleIgnace_93 (exonuclease) DanielleIgnace_94 DanielleIgnace_95 DanielleIgnace_96 DanielleIgnace_97 (glycosyltransferase) DanielleIgnace_98 (ParB-like nuclease) DanielleIgnace_99 DanielleIgnace_100 (methyltransferase)
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MT889387
Refseq Number	None yet
Archiving Info
Archiving status	Archived
SEA Lysate Titer	1.2*10^8
Pitt Freezer Box#	58
Pitt Freezer Box Grid#	G10
Available Files
GenBank File for Phamerator	Download

Click to View

Click to View