Streptomyces phage Dubu
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| Detailed Information for Phage Dubu | |
| Discovery Information | |
| Isolation Host | Streptomyces platensis MJ1A1 |
| Found By | Monica Jeung |
| Year Found | 2016 |
| Location Found | La Jolla, CA USA |
| Finding Institution | University of California, San Diego |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 32.874361 N, 117.240544 W Map |
| Discovery Notes | Soil was damp, after about a week of rain Found in a clear patch in a lawn near the base of a tree |
| Naming Notes | I am a Korean pop fan and this phage was named for the nickname of the leader of the boyband SHINee. It translates to tofu. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 10, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1205 |
| Genome length (bp) | 39535 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCGGGGGA |
| GC Content | 68.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BJ |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of the Sciences (now St. Joseph's Univ) |
| Annotation Status | In GenBank |
| Plaque Notes | Plaque Notes: Plaques were small, grew close together so that many merged, and turgid Phage Notes: Hexagonal capsid Average of tail length measurements was 112.460 nm Average of capsid length measurements was 58.084 nm Average of capsid width measurements was 59.701 nm Average of capsid diagonal measurements was 63.976 nm |
| Number of Genes | 47 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDubu_1 Dubu_2 Dubu_3 Dubu_4 Dubu_5 Dubu_6 Dubu_7 Dubu_8 Dubu_9 Dubu_10 Dubu_11 Dubu_12 Dubu_13 Dubu_14 Dubu_15 Dubu_16 Dubu_17 Dubu_18 Dubu_19 Dubu_20 Dubu_21 Dubu_22 Dubu_23 Dubu_24 Dubu_25 Dubu_26 Dubu_27 Dubu_28 Dubu_29 Dubu_30 Dubu_31 Dubu_32 Dubu_33 Dubu_34 Dubu_35 Dubu_36 Dubu_37 Dubu_38 Dubu_39 Dubu_40 Dubu_41 Dubu_42 Dubu_43 Dubu_44 Dubu_45 Dubu_46 Dubu_47 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK937595 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| SEA Lysate Titer | 6x10^9 pfu/mL |
| Date of SEA Lysate Titering | Nov 9, 2016 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |