| Detailed Information for Phage JoyLin | |
| Discovery Information | |
| Isolation Host | Curtobacterium flaccumfaciens NRRL B-729 SEA |
| Found By | Theresa Chiu |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.442808 N, 79.963726 W Map |
| Discovery Notes | Found in the soil under a tree next to Salk Hall & Pavilion |
| Naming Notes | Named after my mother, who is the reason I'm here today. Annotated by T. Chiu. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 13, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Single-end reads |
| Read Length | 100 bp |
| Approximate Shotgun Coverage | 5742 |
| Genome length (bp) | 57226 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCCAGCC |
| GC Content | 59.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | JA |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | Round, circular clear plaques. Some have faint trails. |
| Number of Genes | 85 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewJoyLin_1 JoyLin_2 JoyLin_3 JoyLin_4 JoyLin_5 JoyLin_6 JoyLin_7 JoyLin_8 JoyLin_9 JoyLin_10 JoyLin_11 JoyLin_12 JoyLin_13 JoyLin_14 JoyLin_15 JoyLin_16 JoyLin_17 JoyLin_18 JoyLin_19 JoyLin_20 JoyLin_21 JoyLin_22 JoyLin_23 JoyLin_24 JoyLin_25 JoyLin_26 JoyLin_27 JoyLin_28 JoyLin_29 JoyLin_30 JoyLin_31 JoyLin_32 JoyLin_33 JoyLin_34 JoyLin_35 JoyLin_36 JoyLin_37 JoyLin_38 JoyLin_39 JoyLin_40 JoyLin_41 JoyLin_42 JoyLin_43 JoyLin_44 JoyLin_45 JoyLin_46 JoyLin_47 JoyLin_48 JoyLin_49 JoyLin_50 JoyLin_51 JoyLin_52 JoyLin_53 JoyLin_54 JoyLin_55 JoyLin_56 JoyLin_57 JoyLin_58 JoyLin_59 JoyLin_60 JoyLin_61 JoyLin_62 JoyLin_63 JoyLin_64 JoyLin_65 JoyLin_66 JoyLin_67 JoyLin_68 JoyLin_69 JoyLin_70 JoyLin_71 JoyLin_72 JoyLin_73 JoyLin_74 JoyLin_75 JoyLin_76 JoyLin_77 JoyLin_78 JoyLin_79 JoyLin_80 JoyLin_81 JoyLin_82 JoyLin_83 JoyLin_84 JoyLin_85 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ868962 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.5*10^10 |
| Pitt Freezer Box# | 219 |
| Pitt Freezer Box Grid# | H5 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| GenBank File for Phamerator | Download |
