Gordonia phage Malibo
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Detailed Information for Phage Malibo
Discovery Information
Isolation HostGordonia terrae 3612
Found ByEmily Kowalski
Year Found2019
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.4417 N, 79.9604 W Map
Discovery Notesweather was sunny. the soil was collected from beneath a layer of mulch
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1849
Genome length (bp)49417
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGAGGTA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDW
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes75
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Malibo_1
(terminase small subunit)

Malibo_2
(terminase large subunit)

Malibo_3
(portal protein)

Malibo_4

Malibo_5
(scaffolding protein)

Malibo_6
(major capsid protein)

Malibo_7

Malibo_8
(head-to-tail adaptor)

Malibo_9
(head-to-tail stopper)

Malibo_10

Malibo_11
(tail terminator)

Malibo_12
(major tail protein)

Malibo_13

Malibo_14

Malibo_15

Malibo_16
(tail assembly chaperone)

Malibo_17
(tail assembly chaperone)

Malibo_18
(tape measure protein)

Malibo_19
(minor tail protein)

Malibo_20
(minor tail protein)

Malibo_21

Malibo_22
(lysin A, l-ala-d-glu peptidase domain)

Malibo_23
(lysin A, glycosyl hydrolase domain)

Malibo_24
(holin)

Malibo_25

Malibo_26

Malibo_27
(lysin B)

Malibo_28
(minor tail protein)

Malibo_29
(minor tail protein)

Malibo_30
(minor tail protein)

Malibo_31

Malibo_32

Malibo_33

Malibo_34
(helix-turn-helix DNA binding protein)

Malibo_35

Malibo_36

Malibo_37

Malibo_38
(tyrosine integrase)

Malibo_39

Malibo_40
(tyrosine integrase)

Malibo_41
(helix-turn-helix DNA binding domain protein)

Malibo_42
(metalloprotease)

Malibo_43

Malibo_44
(immunity repressor)

Malibo_45
(helix-turn-helix DNA binding domain protein)

Malibo_46

Malibo_47

Malibo_48

Malibo_49

Malibo_50

Malibo_51
(excise)

Malibo_52

Malibo_53

Malibo_54

Malibo_55

Malibo_56

Malibo_57
(DnaQ-like DNA polymerase III subunit)

Malibo_58

Malibo_59
(RecE-like exonuclease)

Malibo_60
(RecT-like ssDNA binding protein)

Malibo_61

Malibo_62

Malibo_63

Malibo_64

Malibo_65
(DNA methylase)

Malibo_66

Malibo_67
(helix-turn-helix DNA binding domain protein)

Malibo_68
(helix-turn-helix DNA binding domain protein)

Malibo_69

Malibo_70
(DNA binding protein)

Malibo_71

Malibo_72

Malibo_73
(RusA-like resolvase)

Malibo_74

Malibo_75
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ681514
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.1 x 10^5
Pitt Freezer Box# 114
Pitt Freezer Box Grid# F7
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload