Arthrobacter phage Mendel
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| Detailed Information for Phage Mendel | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Patrick Rimple |
| Year Found | 2017 |
| Location Found | Buffalo, NY USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 42.93382 N, 78.64562 W Map |
| Discovery Notes | Came from a dirt pile used in landscaping |
| Naming Notes | As I was out of names Mendel being a famous scientist seemed reasonable |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Sep 11, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 2177 |
| Genome length (bp) | 19428 |
| Character of genome ends | Unknown |
| End Determination Notes | Though not yet experimentally verified, we believe that it's likely that this phage's genome ends are covalently bound to a Terminal Protein when in the capsid. The evidence for this is the similarity of several genes to genes in phi29, a well-studied example of terminal-protein bound genomes. The genome size is also similar to phi29, and no sequencing reads continued past the genome ends, which is unusual in the case of a genome with 3' or 5' genome extensions. |
| GC Content | 59.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FD |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Lysogeny Notes | Makes mesas- did not do further testing yet |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | 1 mm or less, clear |
| Number of Genes | 28 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewMendel_1 Mendel_2 Mendel_3 Mendel_4 Mendel_5 Mendel_6 Mendel_7 Mendel_8 Mendel_9 Mendel_10 Mendel_11 Mendel_12 Mendel_13 Mendel_14 Mendel_15 Mendel_16 Mendel_17 Mendel_18 Mendel_19 Mendel_20 Mendel_21 Mendel_22 Mendel_23 Mendel_24 Mendel_25 Mendel_26 Mendel_27 Mendel_28 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK016500 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 6 |
| Pitt Freezer Box Grid# | C7 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |