| Detailed Information for Phage SamW | |
| Discovery Information | |
| Isolation Host | Corynebacterium xerosis ATCC 373 |
| Found By | Sarah Nealy and Mckinley Williams |
| Year Found | 2017 |
| Location Found | Birmingham, AL USA |
| Finding Institution | University of Alabama at Birmingham |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 33.543682 N, 86.779633 W Map |
| Discovery Notes | We enriched sewage influent samples. |
| Naming Notes | Name based on mixture of Sarah and Mckinley, plus W for our team name- white |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 21, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Genome length (bp) | 44609 |
| Character of genome ends | Unknown |
| Overhang Length | 17 bases |
| Overhang Sequence | CCCCAGCGCCTCGGGTA |
| GC Content | 68.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EP |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | University of Alabama at Birmingham |
| Annotation Status | In GenBank |
| Plaque Notes | Medium round plaques with no halos or rings. Plaques are about 2 mm in diameter. |
| Morphotype | Siphoviridae |
| Number of Genes | 60 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSamW_1 SamW_2 SamW_3 SamW_4 SamW_5 SamW_6 SamW_7 SamW_8 SamW_9 SamW_10 SamW_11 SamW_12 SamW_13 SamW_14 SamW_15 SamW_16 SamW_17 SamW_18 SamW_19 SamW_20 SamW_21 SamW_22 SamW_23 SamW_24 SamW_25 SamW_26 SamW_27 SamW_28 SamW_29 SamW_30 SamW_31 SamW_32 SamW_33 SamW_34 SamW_35 SamW_36 SamW_37 SamW_38 SamW_39 SamW_40 SamW_41 SamW_42 SamW_43 SamW_44 SamW_45 SamW_46 SamW_47 SamW_48 SamW_49 SamW_50 SamW_51 SamW_52 SamW_53 SamW_54 SamW_55 SamW_56 SamW_57 SamW_58 SamW_59 SamW_60 — tRNA SamW_61 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH727560 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 59 |
| Pitt Freezer Box Grid# | E5 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
