| Detailed Information for Phage Sapo | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Nina Seidensticker |
| Year Found | 2022 |
| Location Found | Tampa, FL United states |
| Finding Institution | University of South Florida |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 28.06528 N, 82.41056 W Map |
| Naming Notes | The location where the soil was collected had a dead frog. In memory of this frog I will be naming the phage Sapo which is toad in spanish. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Nov 28, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1145 |
| Genome length (bp) | 45580 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | TGCCCAAGGTA |
| GC Content | 66.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DA |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | This phage yields medium sized, round, clear plaques. |
| Morphotype | Siphoviridae |
| Number of Genes | 60 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSapo_1 Sapo_2 Sapo_3 Sapo_4 Sapo_5 Sapo_6 Sapo_7 Sapo_8 Sapo_9 Sapo_10 Sapo_11 Sapo_12 Sapo_13 Sapo_14 Sapo_15 Sapo_16 Sapo_17 Sapo_18 Sapo_19 Sapo_20 Sapo_21 Sapo_22 Sapo_23 Sapo_24 Sapo_25 Sapo_26 Sapo_27 Sapo_28 Sapo_29 Sapo_30 Sapo_31 Sapo_32 Sapo_33 Sapo_34 Sapo_35 Sapo_36 Sapo_37 Sapo_38 Sapo_39 Sapo_40 Sapo_41 Sapo_42 Sapo_43 Sapo_44 Sapo_45 Sapo_46 Sapo_47 Sapo_48 — tRNA Sapo_49 Sapo_50 Sapo_51 Sapo_52 Sapo_53 Sapo_54 Sapo_55 Sapo_56 Sapo_57 Sapo_58 Sapo_59 Sapo_60 Sapo_61 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OQ938587 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.195x10^11 PFU/mL |
| Pitt Freezer Box# | 149 |
| Pitt Freezer Box Grid# | F7 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
