Microbacterium phage Scruffy
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| Detailed Information for Phage Scruffy | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | German Andres Mercado Salazar |
| Year Found | 2019 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 45.415278 N, 74.689722 W Map |
| Discovery Notes | The Environmental Sample was collected after a rainy day. The sample itself was quite damp. |
| Naming Notes | Since the environmental sample was collected at a dog park I frequently visit (Jack Purcell Park) I decided to name it Scruffy. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 17, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 58 |
| Genome length (bp) | 53928 |
| Character of genome ends | Circularly Permuted |
| GC Content | 64.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EM |
| Subcluster | EM1 |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 8/31/2024) |
| Plaque Notes | Originally it presented small like colonies. After purification it presented various plaque sizes with seemly no distinct morphology. |
| Number of Genes | 50 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewScruffy_1 Scruffy_2 Scruffy_3 Scruffy_4 Scruffy_5 Scruffy_6 Scruffy_7 Scruffy_8 Scruffy_9 Scruffy_10 Scruffy_11 Scruffy_12 Scruffy_13 Scruffy_14 Scruffy_15 Scruffy_16 Scruffy_17 Scruffy_18 Scruffy_19 Scruffy_20 Scruffy_21 Scruffy_22 Scruffy_23 Scruffy_24 Scruffy_25 Scruffy_26 Scruffy_27 Scruffy_28 Scruffy_29 Scruffy_30 Scruffy_31 Scruffy_32 Scruffy_33 Scruffy_34 Scruffy_35 Scruffy_36 Scruffy_37 Scruffy_38 Scruffy_39 Scruffy_40 Scruffy_41 Scruffy_42 Scruffy_43 Scruffy_44 Scruffy_45 Scruffy_46 Scruffy_47 Scruffy_48 Scruffy_49 Scruffy_50 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 106 |
| Pitt Freezer Box Grid# | E3 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
